Wall clock time and date at job start Tue Mar 31 2020 17:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.70098 * 2 1 4 4 C 1.53626 * 109.66414 * 120.59353 * 2 1 3 5 5 H 1.08992 * 109.43003 * 294.41008 * 4 2 1 6 6 N 1.46501 * 109.63315 * 54.55652 * 4 2 1 7 7 C 1.34777 * 119.99273 * 204.83269 * 6 4 2 8 8 O 1.21549 * 120.00454 * 0.02562 * 7 6 4 9 9 C 1.47835 * 119.99345 * 180.02562 * 7 6 4 10 10 C 1.39969 * 120.94180 * 354.87105 * 9 7 6 11 11 N 1.32136 * 118.91991 * 180.02562 * 10 9 7 12 12 C 1.31878 * 120.97036 * 359.97438 * 11 10 9 13 13 N 1.31855 * 122.09725 * 0.03292 * 12 11 10 14 14 C 1.32161 * 120.96549 * 359.65072 * 13 12 11 15 15 C 1.50701 * 120.53908 * 180.31335 * 14 13 12 16 16 C 1.52994 * 117.49663 * 1.46710 * 15 14 13 17 17 C 1.53000 * 117.49842 * 292.84330 * 15 14 13 18 18 C 1.53043 * 109.23776 * 174.54788 * 4 2 1 19 19 C 1.53045 * 109.53710 * 298.50532 * 18 4 2 20 20 C 1.53191 * 109.31004 * 61.37000 * 19 18 4 21 21 N 1.46928 * 108.77701 * 305.36227 * 20 19 18 22 22 C 1.36936 * 120.63371 * 233.58369 * 21 20 19 23 23 H 1.07991 * 120.00259 * 147.14063 * 22 21 20 24 24 C 1.38810 * 119.99617 * 327.15066 * 22 21 20 25 25 N 1.31618 * 120.00440 * 333.15975 * 24 22 21 26 26 Si 1.86805 * 119.99683 * 153.16626 * 24 22 21 27 27 H 1.48493 * 109.47491 * 89.99812 * 26 24 22 28 28 H 1.48495 * 109.47324 * 329.99075 * 26 24 22 29 29 H 1.48504 * 109.46810 * 209.99555 * 26 24 22 30 30 H 1.08990 * 109.47165 * 180.35796 * 1 2 3 31 31 H 1.09002 * 109.46579 * 300.35539 * 1 2 3 32 32 H 1.08999 * 109.47411 * 60.35097 * 1 2 3 33 33 H 0.96998 * 120.00568 * 24.83561 * 6 4 2 34 34 H 1.07993 * 120.53694 * 0.02562 * 10 9 7 35 35 H 1.07994 * 118.95121 * 180.02562 * 12 11 10 36 36 H 1.09004 * 115.54921 * 147.17111 * 15 14 13 37 37 H 1.08993 * 117.50436 * 359.97438 * 16 15 14 38 38 H 1.09008 * 117.49695 * 145.01842 * 16 15 14 39 39 H 1.08999 * 117.49511 * 214.97465 * 17 15 14 40 40 H 1.08994 * 117.50185 * 0.02562 * 17 15 14 41 41 H 1.09003 * 109.45440 * 178.49411 * 18 4 2 42 42 H 1.08992 * 109.46589 * 58.53059 * 18 4 2 43 43 H 1.08993 * 109.49864 * 301.42042 * 19 18 4 44 44 H 1.09002 * 109.52258 * 181.33661 * 19 18 4 45 45 H 1.09001 * 109.58566 * 185.57233 * 20 19 18 46 46 H 1.09006 * 109.58726 * 65.15200 * 20 19 18 47 47 H 0.96996 * 119.99606 * 355.82675 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2453 5 1 1.7690 -0.1771 2.1386 6 7 1.4591 -2.0769 1.3040 7 6 1.3428 -2.7103 2.4879 8 8 1.7252 -2.1692 3.5069 9 6 0.7501 -4.0634 2.5470 10 6 0.2068 -4.6616 1.4043 11 7 -0.3132 -5.8724 1.5027 12 6 -0.3242 -6.5147 2.6544 13 7 0.1765 -5.9885 3.7549 14 6 0.7219 -4.7847 3.7459 15 6 1.2977 -4.1954 5.0077 16 6 1.2542 -5.0550 6.2726 17 6 0.3225 -3.8492 6.1347 18 6 3.5712 -0.8498 1.1675 19 6 3.9615 -1.6629 -0.0690 20 6 3.4656 -0.9421 -1.3265 21 7 2.0225 -0.6996 -1.1945 22 6 1.1536 -1.1127 -2.1690 23 1 0.1561 -1.4303 -1.9037 24 6 1.5550 -1.1232 -3.4977 25 7 2.4920 -0.2953 -3.9088 26 14 0.7654 -2.3125 -4.7025 27 1 -0.4211 -1.6720 -5.3246 28 1 0.3441 -3.5406 -3.9818 29 1 1.7456 -2.6704 -5.7591 30 1 -0.3633 -1.0275 0.0064 31 1 -0.3632 0.5194 0.8868 32 1 -0.3634 0.5084 -0.8931 33 1 1.1537 -2.5086 0.4908 34 1 0.2124 -4.1421 0.4575 35 1 -0.7571 -7.5031 2.6977 36 1 2.1608 -3.5438 4.8711 37 1 0.8088 -6.0465 6.1923 38 1 2.0888 -4.9691 6.9685 39 1 0.5442 -2.9701 6.7397 40 1 -0.7354 -4.0480 5.9636 41 1 3.9443 -1.3481 2.0623 42 1 4.0067 0.1470 1.0989 43 1 3.5061 -2.6515 -0.0129 44 1 5.0460 -1.7637 -0.1112 45 1 3.6531 -1.5638 -2.2019 46 1 3.9877 0.0088 -1.4325 47 1 2.8591 0.3632 -3.2984 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994334656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:54 Heat of formation + Delta-G solvation = 44.278948 kcal Electronic energy + Delta-G solvation = -29523.845175 eV Core-core repulsion = 25707.486234 eV Total energy + Delta-G solvation = -3816.358941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.48844 -40.95728 -39.23843 -38.18132 -35.83447 -34.66458 -34.14348 -33.63295 -32.96524 -30.92563 -28.01037 -26.78846 -26.39233 -26.29547 -23.78891 -23.23515 -22.66013 -22.31710 -22.10362 -20.41708 -19.01534 -18.99021 -18.65081 -17.94733 -16.88865 -16.70122 -16.26749 -16.13868 -15.98774 -15.74284 -15.53452 -15.40403 -15.07475 -14.84531 -14.74448 -14.48296 -14.20443 -13.52671 -13.23045 -13.07329 -12.81469 -12.77650 -12.73865 -12.53207 -12.50910 -12.35453 -12.26678 -11.89769 -11.83444 -11.74407 -11.56725 -11.51958 -11.33198 -10.98671 -10.68969 -10.55359 -10.41819 -10.35449 -9.98546 -8.81741 -8.14400 -5.34301 -0.67893 -0.17676 1.63696 1.69486 1.75967 1.85269 2.07211 2.55589 2.68986 2.80628 2.96784 3.00975 3.25395 3.29284 3.47658 3.58013 3.71871 3.92188 3.98201 3.99752 4.06670 4.09701 4.12529 4.27217 4.31235 4.46955 4.57713 4.61673 4.67289 4.75976 4.86573 4.87809 4.91230 4.94447 5.03106 5.09807 5.13886 5.20742 5.25063 5.28673 5.30922 5.40001 5.40510 5.59128 5.75365 6.03456 6.48230 6.50225 6.87505 7.10402 7.14336 7.85252 8.32923 9.09203 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.004017 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.249873 B = 6968.098099 C = 8101.110570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.156 3.844 3 H 0.032 0.968 4 C 0.146 3.854 5 H 0.087 0.913 6 N -0.691 5.691 7 C 0.568 3.432 8 O -0.552 6.552 9 C -0.249 4.249 10 C 0.189 3.811 11 N -0.538 5.538 12 C 0.318 3.682 13 N -0.530 5.530 14 C 0.258 3.742 15 C -0.140 4.140 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.115 4.115 19 C -0.122 4.122 20 C 0.161 3.839 21 N -0.602 5.602 22 C -0.343 4.343 23 H 0.064 0.936 24 C -0.068 4.068 25 N -0.943 5.943 26 Si 1.104 2.896 27 H -0.289 1.289 28 H -0.269 1.269 29 H -0.300 1.300 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.406 0.594 34 H 0.179 0.821 35 H 0.238 0.762 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.002 0.998 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -9.123 17.157 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.050 3.950 3 H 0.050 0.950 4 C 0.039 3.961 5 H 0.105 0.895 6 N -0.342 5.342 7 C 0.354 3.646 8 O -0.432 6.432 9 C -0.257 4.257 10 C 0.022 3.978 11 N -0.252 5.252 12 C 0.032 3.968 13 N -0.244 5.244 14 C 0.111 3.889 15 C -0.158 4.158 16 C -0.184 4.184 17 C -0.181 4.181 18 C -0.153 4.153 19 C -0.161 4.161 20 C 0.036 3.964 21 N -0.327 5.327 22 C -0.472 4.472 23 H 0.081 0.919 24 C -0.266 4.266 25 N -0.584 5.584 26 Si 0.930 3.070 27 H -0.216 1.216 28 H -0.194 1.194 29 H -0.227 1.227 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.243 0.757 34 H 0.195 0.805 35 H 0.254 0.746 36 H 0.151 0.849 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.020 0.980 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.759 -10.194 16.310 19.597 hybrid contribution 0.425 1.649 0.355 1.740 sum -3.333 -8.545 16.665 19.022 Atomic orbital electron populations 1.21649 0.94339 1.01551 1.00591 1.20960 0.94474 0.93299 0.86270 0.95018 1.21429 0.92916 0.82871 0.98836 0.89513 1.45849 1.61326 1.18162 1.08837 1.17838 0.78428 0.84602 0.83692 1.90677 1.51130 1.67248 1.34129 1.21545 1.08608 0.98261 0.97262 1.23715 0.86184 0.90108 0.97778 1.68537 1.18583 1.08864 1.29217 1.25977 0.88691 1.00212 0.81947 1.68333 1.12484 1.11549 1.31988 1.21180 0.86395 0.88044 0.93246 1.21280 1.03825 1.04968 0.85773 1.23082 1.02324 0.96150 0.96804 1.22915 0.96048 1.00541 0.98558 1.21724 0.95320 1.00698 0.97577 1.21854 0.99936 0.98975 0.95305 1.20750 0.84217 0.95708 0.95770 1.44403 1.02425 1.65881 1.19988 1.20052 0.98328 1.41043 0.87825 0.91870 1.26952 1.00464 1.00978 0.98213 1.70875 1.32326 1.17935 1.37257 0.83014 0.74659 0.75142 0.74187 1.21646 1.19415 1.22672 0.92715 0.91764 0.93856 0.75706 0.80452 0.74628 0.84901 0.87521 0.86753 0.87084 0.89267 0.91975 0.91128 0.92848 0.91607 0.94171 0.97979 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 7.78 71.98 0.56 -3.64 16 2 C 0.16 5.71 3.22 45.12 0.15 5.85 16 3 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.15 4.59 2.33 45.22 0.11 4.70 16 5 H 0.09 2.68 7.58 -2.39 -0.02 2.66 16 6 N -0.69 -20.69 3.43 -444.36 -1.52 -22.21 16 7 C 0.57 16.84 7.72 86.78 0.67 17.51 16 8 O -0.55 -17.98 13.20 -3.87 -0.05 -18.03 16 9 C -0.25 -6.73 5.91 -19.91 -0.12 -6.84 16 10 C 0.19 4.81 10.80 85.07 0.92 5.73 16 11 N -0.54 -13.06 10.42 -198.98 -2.07 -15.14 16 12 C 0.32 6.46 12.27 180.84 2.22 8.67 16 13 N -0.53 -12.18 9.45 -187.06 -1.77 -13.95 16 14 C 0.26 6.61 6.53 42.92 0.28 6.89 16 15 C -0.14 -3.30 4.81 -11.54 -0.06 -3.36 16 16 C -0.15 -2.63 10.04 30.59 0.31 -2.33 16 17 C -0.14 -2.79 10.23 30.60 0.31 -2.48 16 18 C -0.11 -3.56 5.57 30.62 0.17 -3.39 16 19 C -0.12 -4.17 5.93 30.67 0.18 -3.99 16 20 C 0.16 6.94 4.82 86.36 0.42 7.35 16 21 N -0.60 -26.16 2.41 -674.41 -1.63 -27.79 16 22 C -0.34 -16.68 8.33 84.03 0.70 -15.98 16 23 H 0.06 2.99 6.44 -2.92 -0.02 2.97 16 24 C -0.07 -3.59 4.59 84.86 0.39 -3.20 16 25 N -0.94 -54.56 12.71 21.65 0.28 -54.28 16 26 Si 1.10 47.97 30.00 68.60 2.06 50.03 16 27 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 28 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 29 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 30 H 0.05 1.82 6.40 -2.39 -0.02 1.80 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.64 7.66 -2.39 -0.02 1.63 16 33 H 0.41 12.56 5.95 -92.71 -0.55 12.01 16 34 H 0.18 4.28 6.57 -2.91 -0.02 4.26 16 35 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.13 3.60 6.05 -2.38 -0.01 3.58 16 37 H 0.11 1.92 7.58 -2.39 -0.02 1.91 16 38 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.86 7.53 -2.39 -0.02 1.85 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 45 H 0.04 1.98 6.74 -2.39 -0.02 1.96 16 46 H 0.00 0.10 7.92 -2.38 -0.02 0.08 16 47 H 0.25 15.04 7.06 -92.71 -0.65 14.38 16 Total: -1.00 -61.15 370.50 3.05 -58.10 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.56 Total: 31.76 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.20 Total: 11.52 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -6.72 Total: -133.37 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.05 Total: -18.03 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.06 Total: 50.03 kcal Total: -61.15 3.05 -58.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994334656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.376 kcal (2) G-P(sol) polarization free energy of solvation -61.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds