Wall clock time and date at job start Tue Mar 31 2020 16:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.38225 * 2 1 4 4 C 1.53024 * 109.42705 * 119.86445 * 2 1 3 5 5 C 1.53369 * 109.75308 * 191.78513 * 4 2 1 6 6 C 1.50946 * 108.20552 * 309.33820 * 5 4 2 7 7 N 1.30130 * 128.28919 * 196.75115 * 6 5 4 8 8 N 1.40307 * 108.12491 * 179.85776 * 7 6 5 9 9 H 0.97002 * 126.00489 * 180.02562 * 8 7 6 10 10 C 1.35198 * 107.99329 * 0.04508 * 8 7 6 11 11 C 1.34564 * 107.61787 * 0.03178 * 10 8 7 12 12 C 1.50885 * 128.32932 * 179.87778 * 11 10 8 13 13 H 1.08997 * 109.71479 * 316.33604 * 12 11 10 14 14 C 1.50697 * 109.75331 * 76.96358 * 12 11 10 15 15 O 1.21285 * 120.00225 * 82.95202 * 14 12 11 16 16 N 1.34772 * 120.00317 * 262.94417 * 14 12 11 17 17 C 1.46500 * 120.00607 * 180.02562 * 16 14 12 18 18 H 1.09006 * 115.51296 * 350.41418 * 17 16 14 19 19 C 1.52997 * 117.44710 * 205.00355 * 17 16 14 20 20 H 1.09002 * 119.53750 * 4.11277 * 19 17 16 21 21 C 1.54381 * 118.12562 * 159.20941 * 19 17 16 22 22 N 1.48148 * 104.61597 * 87.19157 * 21 19 17 23 23 C 1.36934 * 127.83820 * 140.42195 * 22 21 19 24 24 H 1.08003 * 120.00114 * 198.70145 * 23 22 21 25 25 C 1.38816 * 120.00355 * 18.69313 * 23 22 21 26 26 N 1.31620 * 119.99608 * 9.70380 * 25 23 22 27 27 Si 1.86796 * 120.00182 * 189.70365 * 25 23 22 28 28 H 1.48504 * 109.47298 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.47138 * 120.00319 * 27 25 23 30 30 H 1.48504 * 109.47268 * 240.00043 * 27 25 23 31 31 C 1.48150 * 104.32519 * 320.41153 * 22 21 19 32 32 C 1.52999 * 117.44456 * 135.75803 * 17 16 14 33 33 H 1.08999 * 119.54163 * 355.88424 * 32 17 16 34 34 H 1.08998 * 109.46785 * 182.87684 * 1 2 3 35 35 H 1.08996 * 109.47264 * 302.88247 * 1 2 3 36 36 H 1.09006 * 109.46945 * 62.88533 * 1 2 3 37 37 H 1.09003 * 109.42693 * 311.87462 * 4 2 1 38 38 H 1.08999 * 109.42135 * 71.75865 * 4 2 1 39 39 H 1.08996 * 109.71822 * 69.02007 * 5 4 2 40 40 H 1.09003 * 109.71323 * 189.66139 * 5 4 2 41 41 H 1.08003 * 126.19066 * 180.02562 * 10 8 7 42 42 H 0.97008 * 119.99848 * 359.97438 * 16 14 12 43 43 H 1.08996 * 110.40885 * 205.97141 * 21 19 17 44 44 H 1.09005 * 110.40722 * 328.40542 * 21 19 17 45 45 H 0.96996 * 119.99849 * 179.97438 * 26 25 23 46 46 H 1.08998 * 110.40682 * 158.37515 * 31 22 21 47 47 H 1.08998 * 110.40420 * 280.68691 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0390 -0.7186 1.2515 5 6 3.5440 -0.4723 1.4146 6 6 4.2194 -0.7946 0.1038 7 7 5.4828 -1.0116 -0.1204 8 7 5.6443 -1.2748 -1.4891 9 1 6.4819 -1.4716 -1.9370 10 6 4.4274 -1.2055 -2.0741 11 6 3.5308 -0.9096 -1.1154 12 6 2.0403 -0.7204 -1.2543 13 1 1.8269 -0.1178 -2.1371 14 6 1.3661 -2.0623 -1.3797 15 8 1.1069 -2.7061 -0.3850 16 7 1.0508 -2.5470 -2.5970 17 6 0.3948 -3.8513 -2.7190 18 1 0.3423 -4.4379 -1.8017 19 6 0.5780 -4.6126 -4.0333 20 1 1.2339 -4.2059 -4.8031 21 6 0.3377 -6.1376 -4.0305 22 7 -1.1151 -6.2876 -4.2791 23 6 -1.7416 -7.2214 -5.0606 24 1 -2.7523 -7.0506 -5.4007 25 6 -1.0775 -8.3875 -5.4159 26 7 0.0736 -8.6871 -4.8523 27 14 -1.8176 -9.5314 -6.6938 28 1 -3.1071 -8.9713 -7.1721 29 1 -0.8817 -9.6660 -7.8389 30 1 -2.0521 -10.8663 -6.0867 31 6 -1.7363 -5.1983 -3.4903 32 6 -0.7791 -3.9618 -3.6939 33 1 -1.1342 -3.0702 -4.2108 34 1 -0.3633 -1.0264 0.0516 35 1 -0.3633 0.5579 0.8630 36 1 -0.3633 0.4684 -0.9148 37 1 1.5125 -0.3387 2.1270 38 1 1.8561 -1.7888 1.1546 39 1 3.7199 0.5721 1.6720 40 1 3.9390 -1.1167 2.2000 41 1 4.2137 -1.3596 -3.1215 42 1 1.2576 -2.0319 -3.3926 43 1 0.9105 -6.6141 -4.8261 44 1 0.6036 -6.5626 -3.0626 45 1 0.5374 -9.5020 -5.1003 46 1 -2.7281 -4.9662 -3.8782 47 1 -1.7962 -5.4774 -2.4384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025908171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:00 Heat of formation + Delta-G solvation = 92.285187 kcal Electronic energy + Delta-G solvation = -28464.193754 eV Core-core repulsion = 24649.916519 eV Total energy + Delta-G solvation = -3814.277234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86051 -39.91350 -38.49691 -36.52235 -34.41892 -33.00812 -32.48207 -31.27260 -30.19702 -29.76237 -27.06380 -26.89013 -25.55654 -24.11060 -22.58939 -21.23631 -20.97033 -20.52953 -20.16784 -19.31883 -18.98244 -18.03685 -16.85924 -16.68519 -16.10440 -15.31482 -15.16935 -14.92950 -14.72264 -14.30892 -13.98002 -13.82910 -13.44386 -13.35414 -13.15130 -12.87852 -12.77571 -12.72745 -12.24839 -12.07811 -11.65641 -11.50090 -11.41344 -11.33748 -11.13091 -10.93587 -10.86194 -10.82464 -10.39034 -10.36366 -10.19399 -10.13507 -9.77292 -9.66359 -9.46011 -9.21909 -8.74110 -8.59702 -8.30245 -6.85473 -5.82954 -3.17649 1.66919 2.38823 2.60938 2.81984 3.25797 3.36637 3.42553 3.44976 4.18220 4.33003 4.45119 4.50882 4.64462 4.66057 4.86695 5.02059 5.08806 5.17136 5.25071 5.32824 5.36914 5.38424 5.39789 5.45511 5.57395 5.64097 5.69009 5.73778 5.75229 5.80934 5.86262 6.01029 6.03350 6.13393 6.20882 6.22665 6.42760 6.50911 6.57935 6.69321 6.84891 6.89025 7.05446 7.32092 7.46882 7.50026 7.63329 7.69588 8.18258 8.37617 9.08512 9.71469 10.50073 11.32229 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.002630 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.978855 B =10643.080956 C =11444.018249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.066 4.066 3 H 0.076 0.924 4 C -0.131 4.131 5 C -0.039 4.039 6 C 0.098 3.902 7 N -0.291 5.291 8 N -0.483 5.483 9 H 0.440 0.560 10 C 0.073 3.927 11 C -0.230 4.230 12 C -0.020 4.020 13 H 0.091 0.909 14 C 0.528 3.472 15 O -0.528 6.528 16 N -0.698 5.698 17 C 0.096 3.904 18 H 0.131 0.869 19 C -0.182 4.182 20 H 0.099 0.901 21 C 0.189 3.811 22 N -0.592 5.592 23 C -0.229 4.229 24 H 0.076 0.924 25 C -0.004 4.004 26 N -0.912 5.912 27 Si 0.912 3.088 28 H -0.278 1.278 29 H -0.289 1.289 30 H -0.289 1.289 31 C 0.157 3.843 32 C -0.185 4.185 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.177 0.823 42 H 0.396 0.604 43 H 0.083 0.917 44 H 0.027 0.973 45 H 0.254 0.746 46 H 0.050 0.950 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.730 21.433 6.819 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.085 4.085 3 H 0.094 0.906 4 C -0.169 4.169 5 C -0.078 4.078 6 C -0.071 4.071 7 N -0.113 5.113 8 N -0.190 5.190 9 H 0.284 0.716 10 C -0.073 4.073 11 C -0.242 4.242 12 C -0.043 4.043 13 H 0.110 0.890 14 C 0.315 3.685 15 O -0.404 6.404 16 N -0.347 5.347 17 C -0.010 4.010 18 H 0.148 0.852 19 C -0.203 4.203 20 H 0.117 0.883 21 C 0.063 3.937 22 N -0.315 5.315 23 C -0.357 4.357 24 H 0.094 0.906 25 C -0.201 4.201 26 N -0.558 5.558 27 Si 0.742 3.258 28 H -0.203 1.203 29 H -0.216 1.216 30 H -0.216 1.216 31 C 0.030 3.970 32 C -0.206 4.206 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.194 0.806 42 H 0.229 0.771 43 H 0.101 0.899 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.717 20.619 7.929 23.749 hybrid contribution -0.365 -0.368 -2.084 2.148 sum 8.352 20.251 5.844 22.672 Atomic orbital electron populations 1.21972 0.94540 1.03368 1.01538 1.20951 0.95880 0.98570 0.93122 0.90570 1.21992 0.92961 1.04994 0.96920 1.20183 0.94888 1.01799 0.90980 1.22383 0.90359 0.97721 0.96651 1.77032 1.18360 1.23300 0.92657 1.46303 1.08573 1.57802 1.06332 0.71597 1.22088 0.85587 1.00247 0.99414 1.19523 0.94845 1.16754 0.93073 1.19682 0.90078 0.93882 1.00654 0.89044 1.20461 0.77696 0.87327 0.83051 1.90590 1.53691 1.59871 1.36269 1.45504 1.60782 1.20237 1.08134 1.21866 0.97749 0.85096 0.96281 0.85176 1.24597 0.99624 0.99122 0.96965 0.88279 1.20972 0.86368 0.86294 1.00099 1.45106 1.01253 1.32309 1.52873 1.19009 0.98691 0.95380 1.22620 0.90596 1.24958 0.97930 0.96840 1.00404 1.69932 1.16609 1.25607 1.43629 0.86058 0.78302 0.80573 0.80869 1.20305 1.21630 1.21626 1.21697 0.94063 0.86439 0.94800 1.25079 0.91829 1.00106 1.03614 0.87609 0.91144 0.92345 0.92895 0.91241 0.87602 0.90135 0.89971 0.80614 0.77079 0.89917 0.95474 0.93583 0.93196 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.68 37.16 0.32 -1.15 16 2 C -0.07 -0.62 2.40 -90.41 -0.22 -0.83 16 3 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 4 C -0.13 -1.33 5.05 -26.53 -0.13 -1.47 16 5 C -0.04 -0.38 6.31 -27.57 -0.17 -0.56 16 6 C 0.10 1.15 7.10 -82.35 -0.58 0.57 16 7 N -0.29 -3.61 12.68 33.75 0.43 -3.18 16 8 N -0.48 -4.57 7.37 30.35 0.22 -4.35 16 9 H 0.44 2.74 8.96 -182.44 -1.64 1.11 16 10 C 0.07 0.67 11.95 -17.37 -0.21 0.46 16 11 C -0.23 -2.47 5.14 -104.98 -0.54 -3.01 16 12 C -0.02 -0.20 2.68 -92.64 -0.25 -0.45 16 13 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 14 C 0.53 6.91 5.78 -10.99 -0.06 6.84 16 15 O -0.53 -8.80 12.28 5.55 0.07 -8.74 16 16 N -0.70 -8.75 5.56 -53.81 -0.30 -9.05 16 17 C 0.10 1.56 5.92 -67.93 -0.40 1.16 16 18 H 0.13 2.48 7.40 -51.93 -0.38 2.09 16 19 C -0.18 -3.32 6.98 -89.22 -0.62 -3.94 16 20 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 21 C 0.19 4.49 5.63 -2.41 -0.01 4.48 16 22 N -0.59 -15.08 3.37 -166.73 -0.56 -15.65 16 23 C -0.23 -6.34 10.34 -15.06 -0.16 -6.49 16 24 H 0.08 2.04 7.85 -52.48 -0.41 1.62 16 25 C 0.00 -0.10 5.38 -17.43 -0.09 -0.20 16 26 N -0.91 -26.66 11.08 55.49 0.61 -26.04 16 27 Si 0.91 21.76 29.56 -169.99 -5.03 16.74 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 C 0.16 3.30 7.10 -0.57 0.00 3.29 16 32 C -0.18 -3.19 7.34 -87.38 -0.64 -3.83 16 33 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.11 1.42 5.28 -51.93 -0.27 1.15 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.18 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.40 3.76 8.80 -40.82 -0.36 3.40 16 43 H 0.08 2.18 6.77 -51.93 -0.35 1.83 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -33.91 372.30 -11.09 -45.00 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.37 Total: 4.79 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.78 Total: -5.13 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.40 Total: -58.27 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.91 -11.09 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025908171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.282 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds