Wall clock time and date at job start Tue Mar 31 2020 16:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.38225 * 2 1 4 4 C 1.53024 * 109.42705 * 119.86445 * 2 1 3 5 5 C 1.53369 * 109.75308 * 191.78513 * 4 2 1 6 6 C 1.50946 * 108.20552 * 309.33820 * 5 4 2 7 7 N 1.30130 * 128.28919 * 196.75115 * 6 5 4 8 8 N 1.40307 * 108.12491 * 179.85776 * 7 6 5 9 9 H 0.97002 * 126.00489 * 180.02562 * 8 7 6 10 10 C 1.35198 * 107.99329 * 0.04508 * 8 7 6 11 11 C 1.34564 * 107.61787 * 0.03178 * 10 8 7 12 12 C 1.50885 * 128.32932 * 179.87778 * 11 10 8 13 13 H 1.08997 * 109.71479 * 316.33604 * 12 11 10 14 14 C 1.50697 * 109.75331 * 76.96358 * 12 11 10 15 15 O 1.21285 * 120.00225 * 82.95202 * 14 12 11 16 16 N 1.34772 * 120.00317 * 262.94417 * 14 12 11 17 17 C 1.46500 * 120.00607 * 180.02562 * 16 14 12 18 18 H 1.09006 * 115.51296 * 350.41418 * 17 16 14 19 19 C 1.52997 * 117.44710 * 205.00355 * 17 16 14 20 20 H 1.09002 * 119.53750 * 4.11277 * 19 17 16 21 21 C 1.54381 * 118.12562 * 159.20941 * 19 17 16 22 22 N 1.48148 * 104.61597 * 87.19157 * 21 19 17 23 23 C 1.36934 * 127.83820 * 140.42195 * 22 21 19 24 24 H 1.08003 * 120.00114 * 198.70145 * 23 22 21 25 25 C 1.38816 * 120.00355 * 18.69313 * 23 22 21 26 26 N 1.31620 * 119.99608 * 9.70380 * 25 23 22 27 27 Si 1.86796 * 120.00182 * 189.70365 * 25 23 22 28 28 H 1.48504 * 109.47298 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.47138 * 120.00319 * 27 25 23 30 30 H 1.48504 * 109.47268 * 240.00043 * 27 25 23 31 31 C 1.48150 * 104.32519 * 320.41153 * 22 21 19 32 32 C 1.52999 * 117.44456 * 135.75803 * 17 16 14 33 33 H 1.08999 * 119.54163 * 355.88424 * 32 17 16 34 34 H 1.08998 * 109.46785 * 182.87684 * 1 2 3 35 35 H 1.08996 * 109.47264 * 302.88247 * 1 2 3 36 36 H 1.09006 * 109.46945 * 62.88533 * 1 2 3 37 37 H 1.09003 * 109.42693 * 311.87462 * 4 2 1 38 38 H 1.08999 * 109.42135 * 71.75865 * 4 2 1 39 39 H 1.08996 * 109.71822 * 69.02007 * 5 4 2 40 40 H 1.09003 * 109.71323 * 189.66139 * 5 4 2 41 41 H 1.08003 * 126.19066 * 180.02562 * 10 8 7 42 42 H 0.97008 * 119.99848 * 359.97438 * 16 14 12 43 43 H 1.08996 * 110.40885 * 205.97141 * 21 19 17 44 44 H 1.09005 * 110.40722 * 328.40542 * 21 19 17 45 45 H 0.96996 * 119.99849 * 179.97438 * 26 25 23 46 46 H 1.08998 * 110.40682 * 158.37515 * 31 22 21 47 47 H 1.08998 * 110.40420 * 280.68691 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0390 -0.7186 1.2515 5 6 3.5440 -0.4723 1.4146 6 6 4.2194 -0.7946 0.1038 7 7 5.4828 -1.0116 -0.1204 8 7 5.6443 -1.2748 -1.4891 9 1 6.4819 -1.4716 -1.9370 10 6 4.4274 -1.2055 -2.0741 11 6 3.5308 -0.9096 -1.1154 12 6 2.0403 -0.7204 -1.2543 13 1 1.8269 -0.1178 -2.1371 14 6 1.3661 -2.0623 -1.3797 15 8 1.1069 -2.7061 -0.3850 16 7 1.0508 -2.5470 -2.5970 17 6 0.3948 -3.8513 -2.7190 18 1 0.3423 -4.4379 -1.8017 19 6 0.5780 -4.6126 -4.0333 20 1 1.2339 -4.2059 -4.8031 21 6 0.3377 -6.1376 -4.0305 22 7 -1.1151 -6.2876 -4.2791 23 6 -1.7416 -7.2214 -5.0606 24 1 -2.7523 -7.0506 -5.4007 25 6 -1.0775 -8.3875 -5.4159 26 7 0.0736 -8.6871 -4.8523 27 14 -1.8176 -9.5314 -6.6938 28 1 -3.1071 -8.9713 -7.1721 29 1 -0.8817 -9.6660 -7.8389 30 1 -2.0521 -10.8663 -6.0867 31 6 -1.7363 -5.1983 -3.4903 32 6 -0.7791 -3.9618 -3.6939 33 1 -1.1342 -3.0702 -4.2108 34 1 -0.3633 -1.0264 0.0516 35 1 -0.3633 0.5579 0.8630 36 1 -0.3633 0.4684 -0.9148 37 1 1.5125 -0.3387 2.1270 38 1 1.8561 -1.7888 1.1546 39 1 3.7199 0.5721 1.6720 40 1 3.9390 -1.1167 2.2000 41 1 4.2137 -1.3596 -3.1215 42 1 1.2576 -2.0319 -3.3926 43 1 0.9105 -6.6141 -4.8261 44 1 0.6036 -6.5626 -3.0626 45 1 0.5374 -9.5020 -5.1003 46 1 -2.7281 -4.9662 -3.8782 47 1 -1.7962 -5.4774 -2.4384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025908171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:59 Heat of formation + Delta-G solvation = 69.411038 kcal Electronic energy + Delta-G solvation = -28465.185651 eV Core-core repulsion = 24649.916519 eV Total energy + Delta-G solvation = -3815.269132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.63487 -41.02931 -39.89854 -37.44139 -35.96947 -34.37300 -33.52585 -32.35831 -31.67060 -30.55556 -28.80345 -27.94646 -27.22690 -24.93768 -23.84725 -22.57651 -21.89655 -21.69416 -21.24605 -20.86586 -19.88699 -18.85812 -18.78011 -17.71714 -17.31229 -16.74565 -16.11898 -16.07917 -15.71066 -15.58721 -15.23827 -14.85624 -14.77250 -14.63811 -14.43878 -14.02547 -13.72974 -13.69900 -13.49371 -13.33691 -13.15117 -12.85346 -12.77355 -12.74615 -12.34815 -12.12534 -12.04913 -11.97514 -11.91237 -11.86527 -11.63131 -11.56335 -11.12799 -10.86058 -10.70843 -10.55377 -10.28947 -9.61809 -9.39764 -8.90134 -7.94248 -5.31602 0.94185 1.46724 1.46893 1.50792 1.58680 1.78960 2.00782 2.20238 2.48340 2.91577 3.28144 3.45640 3.61888 3.78984 3.85730 3.90617 3.91637 4.00761 4.10921 4.13231 4.29359 4.34722 4.36022 4.53512 4.56356 4.61267 4.68732 4.75373 4.86024 4.91075 4.94172 4.99768 5.00261 5.01777 5.11845 5.27496 5.29383 5.30174 5.41565 5.47190 5.48193 5.58144 5.62025 5.67116 5.79490 6.15564 6.45165 6.65940 6.71833 6.98955 7.39832 7.65927 8.46036 9.20715 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.002630 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.978855 B =10643.080956 C =11444.018249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 H 0.100 0.900 4 C -0.128 4.128 5 C -0.039 4.039 6 C 0.081 3.919 7 N -0.329 5.329 8 N -0.478 5.478 9 H 0.452 0.548 10 C 0.084 3.916 11 C -0.253 4.253 12 C -0.010 4.010 13 H 0.128 0.872 14 C 0.526 3.474 15 O -0.568 6.568 16 N -0.683 5.683 17 C 0.118 3.882 18 H 0.098 0.902 19 C -0.181 4.181 20 H 0.128 0.872 21 C 0.193 3.807 22 N -0.616 5.616 23 C -0.242 4.242 24 H 0.082 0.918 25 C -0.061 4.061 26 N -0.947 5.947 27 Si 0.981 3.019 28 H -0.262 1.262 29 H -0.289 1.289 30 H -0.293 1.293 31 C 0.147 3.853 32 C -0.163 4.163 33 H 0.143 0.857 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.214 0.786 42 H 0.417 0.583 43 H 0.050 0.950 44 H -0.008 1.008 45 H 0.250 0.750 46 H 0.061 0.939 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 24.521 5.133 26.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 H 0.118 0.882 4 C -0.166 4.166 5 C -0.078 4.078 6 C -0.087 4.087 7 N -0.152 5.152 8 N -0.187 5.187 9 H 0.298 0.702 10 C -0.063 4.063 11 C -0.265 4.265 12 C -0.032 4.032 13 H 0.145 0.855 14 C 0.314 3.686 15 O -0.447 6.447 16 N -0.333 5.333 17 C 0.011 3.989 18 H 0.116 0.884 19 C -0.202 4.202 20 H 0.146 0.854 21 C 0.067 3.933 22 N -0.340 5.340 23 C -0.371 4.371 24 H 0.100 0.900 25 C -0.255 4.255 26 N -0.594 5.594 27 Si 0.809 3.191 28 H -0.187 1.187 29 H -0.216 1.216 30 H -0.220 1.220 31 C 0.021 3.979 32 C -0.184 4.184 33 H 0.161 0.839 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.230 0.770 42 H 0.254 0.746 43 H 0.069 0.931 44 H 0.010 0.990 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 8.450 23.764 6.236 25.981 hybrid contribution -0.266 -1.357 -1.449 2.003 sum 8.184 22.407 4.787 24.330 Atomic orbital electron populations 1.21931 0.94588 1.01617 1.02912 1.21004 0.95738 0.99430 0.92251 0.88222 1.21904 0.93480 1.02897 0.98310 1.20225 0.94388 1.02825 0.90324 1.22739 0.90544 0.97656 0.97752 1.76967 1.19036 1.24784 0.94389 1.46379 1.09586 1.57118 1.05628 0.70177 1.22693 0.84827 0.98060 1.00766 1.19711 0.95384 1.18260 0.93110 1.19707 0.89146 0.91887 1.02444 0.85453 1.21187 0.76879 0.88224 0.82263 1.90607 1.55068 1.61239 1.37743 1.45303 1.60196 1.18605 1.09224 1.21324 0.97239 0.86377 0.94006 0.88436 1.24275 1.01369 0.95257 0.99257 0.85413 1.20697 0.85620 0.90089 0.96911 1.45412 1.02223 1.33046 1.53319 1.19413 0.99081 0.96029 1.22530 0.90036 1.25826 0.98525 0.98574 1.02619 1.70128 1.18089 1.25955 1.45272 0.84981 0.78017 0.78030 0.78074 1.18659 1.21554 1.22032 1.21834 0.95568 0.86935 0.93542 1.24978 0.90189 0.99492 1.03716 0.83905 0.94316 0.91266 0.91316 0.90048 0.91197 0.88100 0.90724 0.76984 0.74589 0.93117 0.99033 0.94120 0.92045 0.96501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.68 71.98 0.62 -1.90 16 2 C -0.07 -1.05 2.40 -10.66 -0.03 -1.08 16 3 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 4 C -0.13 -2.51 5.05 30.73 0.16 -2.36 16 5 C -0.04 -0.73 6.31 30.05 0.19 -0.54 16 6 C 0.08 1.83 7.10 43.44 0.31 2.13 16 7 N -0.33 -7.86 12.68 -47.14 -0.60 -8.46 16 8 N -0.48 -8.16 7.37 -57.89 -0.43 -8.59 16 9 H 0.45 4.83 8.96 -213.18 -1.91 2.91 16 10 C 0.08 1.26 11.95 83.33 1.00 2.26 16 11 C -0.25 -4.81 5.14 -20.10 -0.10 -4.91 16 12 C -0.01 -0.16 2.68 -12.10 -0.03 -0.19 16 13 H 0.13 1.22 8.10 -2.39 -0.02 1.20 16 14 C 0.53 12.81 5.78 87.66 0.51 13.32 16 15 O -0.57 -19.13 12.28 -3.05 -0.04 -19.17 16 16 N -0.68 -15.15 5.56 -442.54 -2.46 -17.61 16 17 C 0.12 3.71 5.92 44.99 0.27 3.98 16 18 H 0.10 3.82 7.40 -2.38 -0.02 3.81 16 19 C -0.18 -6.38 6.98 -9.89 -0.07 -6.45 16 20 H 0.13 3.82 8.14 -2.39 -0.02 3.80 16 21 C 0.19 9.52 5.63 86.53 0.49 10.01 16 22 N -0.62 -32.00 3.37 -681.41 -2.30 -34.30 16 23 C -0.24 -13.57 10.34 84.03 0.87 -12.70 16 24 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 25 C -0.06 -3.50 5.38 84.86 0.46 -3.04 16 26 N -0.95 -57.40 11.08 21.65 0.24 -57.16 16 27 Si 0.98 45.30 29.56 68.60 2.03 47.33 16 28 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 29 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 30 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 31 C 0.15 6.16 7.10 87.73 0.62 6.78 16 32 C -0.16 -5.25 7.34 -8.69 -0.06 -5.32 16 33 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.04 0.89 6.30 -2.39 -0.02 0.88 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 38 H 0.07 1.93 5.28 -2.39 -0.01 1.92 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.42 5.92 8.80 -92.70 -0.82 5.11 16 43 H 0.05 2.79 6.77 -2.39 -0.02 2.78 16 44 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -78.43 372.30 -0.08 -78.51 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -1.72 Total: 19.47 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.19 Total: 0.00 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -5.54 Total: -126.13 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.04 Total: -19.17 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.43 -0.08 -78.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025908171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.918 kcal (2) G-P(sol) polarization free energy of solvation -78.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds