Wall clock time and date at job start Tue Mar 31 2020 16:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.38778 * 2 1 4 4 C 1.53022 * 109.43286 * 240.13182 * 2 1 3 5 5 C 1.53366 * 109.75474 * 168.19249 * 4 2 1 6 6 C 1.50953 * 108.20019 * 50.64947 * 5 4 2 7 7 N 1.30132 * 128.28499 * 163.16815 * 6 5 4 8 8 N 1.40314 * 108.12295 * 180.30187 * 7 6 5 9 9 H 0.96998 * 125.99982 * 179.97438 * 8 7 6 10 10 C 1.35193 * 107.99274 * 359.95598 * 8 7 6 11 11 C 1.34580 * 107.62065 * 359.96638 * 10 8 7 12 12 C 1.50881 * 128.32737 * 180.13390 * 11 10 8 13 13 H 1.08999 * 109.71439 * 283.15957 * 12 11 10 14 14 C 1.50698 * 109.72047 * 43.76480 * 12 11 10 15 15 O 1.21277 * 120.00489 * 120.00078 * 14 12 11 16 16 N 1.34777 * 119.99860 * 299.99993 * 14 12 11 17 17 C 1.46501 * 119.99790 * 179.97438 * 16 14 12 18 18 H 1.09000 * 115.51849 * 350.41840 * 17 16 14 19 19 C 1.53002 * 117.44149 * 205.00015 * 17 16 14 20 20 H 1.08999 * 119.54103 * 5.71549 * 19 17 16 21 21 C 1.54386 * 118.12125 * 160.81314 * 19 17 16 22 22 N 1.48146 * 104.61980 * 87.19136 * 21 19 17 23 23 C 1.36937 * 127.83594 * 140.41656 * 22 21 19 24 24 H 1.07999 * 119.99545 * 195.57460 * 23 22 21 25 25 C 1.38809 * 120.00324 * 15.57101 * 23 22 21 26 26 N 1.31620 * 120.00184 * 9.09723 * 25 23 22 27 27 Si 1.86802 * 119.99989 * 189.09918 * 25 23 22 28 28 H 1.48500 * 109.47413 * 89.99945 * 27 25 23 29 29 H 1.48497 * 109.47239 * 209.99929 * 27 25 23 30 30 H 1.48507 * 109.47117 * 330.00058 * 27 25 23 31 31 C 1.48143 * 104.32484 * 320.41235 * 22 21 19 32 32 C 1.53001 * 117.44217 * 135.76396 * 17 16 14 33 33 H 1.09001 * 119.53732 * 355.88005 * 32 17 16 34 34 H 1.08994 * 109.47289 * 300.12449 * 1 2 3 35 35 H 1.09000 * 109.47059 * 60.12703 * 1 2 3 36 36 H 1.09005 * 109.46900 * 180.12598 * 1 2 3 37 37 H 1.09006 * 109.42780 * 48.10626 * 4 2 1 38 38 H 1.09006 * 109.37480 * 288.25380 * 4 2 1 39 39 H 1.08995 * 109.71988 * 290.97708 * 5 4 2 40 40 H 1.08996 * 109.75856 * 170.34534 * 5 4 2 41 41 H 1.07999 * 126.19310 * 179.97438 * 10 8 7 42 42 H 0.97003 * 120.00268 * 0.02562 * 16 14 12 43 43 H 1.09011 * 110.40891 * 205.97489 * 21 19 17 44 44 H 1.09000 * 110.40969 * 328.28314 * 21 19 17 45 45 H 0.97000 * 119.99808 * 180.02562 * 26 25 23 46 46 H 1.08993 * 110.40754 * 158.37059 * 31 22 21 47 47 H 1.09001 * 110.40896 * 280.80513 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7186 -1.2514 5 6 3.5439 -0.4719 -1.4147 6 6 4.2195 -0.7934 -0.1037 7 7 5.4828 -1.0113 0.1203 8 7 5.6440 -1.2768 1.4886 9 1 6.4815 -1.4747 1.9361 10 6 4.4271 -1.2081 2.0736 11 6 3.5306 -0.9102 1.1151 12 6 2.0403 -0.7204 1.2543 13 1 1.5530 -1.6911 1.3455 14 6 1.7456 0.1131 2.4747 15 8 1.1619 1.1700 2.3607 16 7 2.1307 -0.3161 3.6929 17 6 1.8447 0.4945 4.8792 18 1 1.4670 1.4979 4.6825 19 6 2.7540 0.3094 6.0957 20 1 3.6294 -0.3355 6.0191 21 6 2.7780 1.4248 7.1628 22 7 1.6687 1.0848 8.0840 23 6 1.6488 1.1889 9.4493 24 1 0.8847 0.6804 10.0185 25 6 2.6108 1.9477 10.1017 26 7 3.4301 2.7092 9.4081 27 14 2.7426 1.8880 11.9641 28 1 3.6828 0.8088 12.3596 29 1 3.2457 3.1916 12.4668 30 1 1.4038 1.6162 12.5466 31 6 0.5858 0.6070 7.1932 32 6 1.3087 -0.2299 6.1157 33 1 1.0926 -1.2969 6.0618 34 1 -0.3633 0.5157 0.8888 35 1 -0.3633 0.5119 -0.8911 36 1 -0.3633 -1.0277 0.0023 37 1 1.5124 -0.3391 -2.1270 38 1 1.8557 -1.7887 -1.1537 39 1 3.7195 0.5725 -1.6724 40 1 3.9398 -1.1158 -2.2000 41 1 4.2132 -1.3639 3.1206 42 1 2.5979 -1.1613 3.7841 43 1 3.7291 1.4209 7.6955 44 1 2.6062 2.3968 6.7005 45 1 4.1026 3.2392 9.8640 46 1 -0.1170 -0.0139 7.7486 47 1 0.0696 1.4510 6.7358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025908173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:07 Heat of formation + Delta-G solvation = 90.957702 kcal Electronic energy + Delta-G solvation = -28407.880466 eV Core-core repulsion = 24593.545668 eV Total energy + Delta-G solvation = -3814.334798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92161 -39.87463 -38.56524 -36.87960 -34.53623 -33.10184 -32.53449 -31.28660 -30.08335 -29.84401 -27.18456 -26.96039 -25.60948 -24.28215 -22.63055 -21.23466 -21.05560 -20.63663 -19.98623 -19.32621 -19.09037 -18.00789 -17.04173 -16.81746 -16.22490 -15.46340 -15.14997 -14.86237 -14.74138 -14.37224 -14.23885 -13.86706 -13.52211 -13.46918 -13.12331 -12.99397 -12.77402 -12.52081 -12.28443 -12.15168 -11.75982 -11.55351 -11.50902 -11.30441 -11.09986 -11.02291 -10.86236 -10.78332 -10.68656 -10.41825 -10.22396 -10.15907 -9.78191 -9.72067 -9.64216 -9.22439 -8.75877 -8.69089 -8.34519 -6.89674 -5.82413 -3.16812 1.62351 2.34337 2.55842 2.75404 3.16044 3.36367 3.41617 3.43703 4.11354 4.28804 4.41135 4.44386 4.50893 4.60109 4.71351 4.99919 5.05993 5.12731 5.19076 5.21891 5.30477 5.33688 5.36184 5.45310 5.53027 5.53972 5.64791 5.70211 5.76111 5.80543 5.81812 5.87665 5.95679 6.11314 6.18226 6.26028 6.32007 6.35628 6.50137 6.67582 6.78320 6.87480 7.00653 7.31342 7.40508 7.49982 7.55665 7.68414 8.17551 8.29498 9.08195 9.70911 10.47805 11.31904 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.002636 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.003986 B =10618.043535 C =11523.393173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.083 0.917 4 C -0.110 4.110 5 C -0.041 4.041 6 C 0.092 3.908 7 N -0.288 5.288 8 N -0.479 5.479 9 H 0.442 0.558 10 C 0.071 3.929 11 C -0.234 4.234 12 C -0.021 4.021 13 H 0.102 0.898 14 C 0.525 3.475 15 O -0.529 6.529 16 N -0.700 5.700 17 C 0.097 3.903 18 H 0.132 0.868 19 C -0.181 4.181 20 H 0.100 0.900 21 C 0.185 3.815 22 N -0.593 5.593 23 C -0.227 4.227 24 H 0.077 0.923 25 C -0.006 4.006 26 N -0.915 5.915 27 Si 0.913 3.087 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.280 1.280 31 C 0.155 3.845 32 C -0.182 4.182 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.174 0.826 42 H 0.393 0.607 43 H 0.090 0.910 44 H 0.026 0.974 45 H 0.255 0.745 46 H 0.051 0.949 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -11.086 -21.291 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 H 0.102 0.898 4 C -0.148 4.148 5 C -0.080 4.080 6 C -0.077 4.077 7 N -0.110 5.110 8 N -0.187 5.187 9 H 0.286 0.714 10 C -0.076 4.076 11 C -0.246 4.246 12 C -0.043 4.043 13 H 0.120 0.880 14 C 0.312 3.688 15 O -0.405 6.405 16 N -0.350 5.350 17 C -0.009 4.009 18 H 0.149 0.851 19 C -0.202 4.202 20 H 0.118 0.882 21 C 0.059 3.941 22 N -0.316 5.316 23 C -0.355 4.355 24 H 0.095 0.905 25 C -0.203 4.203 26 N -0.561 5.561 27 Si 0.743 3.257 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.205 1.205 31 C 0.029 3.971 32 C -0.204 4.204 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.191 0.809 42 H 0.228 0.772 43 H 0.109 0.891 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.939 -10.255 -21.638 23.963 hybrid contribution 0.235 -0.696 1.899 2.035 sum 1.173 -10.950 -19.739 22.604 Atomic orbital electron populations 1.21909 0.94268 1.01520 1.03121 1.20959 0.96225 1.00059 0.91627 0.89827 1.21665 0.93932 1.01188 0.98064 1.20179 0.94241 1.02570 0.91009 1.22322 0.90432 0.98391 0.96543 1.77024 1.18084 1.23059 0.92833 1.46309 1.08595 1.57525 1.06253 0.71414 1.22141 0.85699 1.00658 0.99066 1.19656 0.95474 1.16294 0.93163 1.19796 0.91289 0.99512 0.93707 0.88021 1.20465 0.78050 0.86399 0.83933 1.90685 1.40783 1.23027 1.85973 1.45564 1.59433 1.23946 1.06039 1.21855 1.03233 0.96135 0.79678 0.85083 1.24627 0.93328 1.04570 0.97723 0.88182 1.21049 0.94898 0.90932 0.87209 1.45170 1.09193 1.75557 1.01699 1.19003 1.12616 1.24330 0.79582 0.90492 1.24904 0.99706 0.97434 0.98231 1.69897 1.22450 1.29763 1.34009 0.86103 0.77820 0.76973 0.84761 1.21539 1.21635 1.20507 1.21117 0.91299 0.94813 0.89894 1.24368 0.98538 0.99454 0.98020 0.87995 0.90868 0.92553 0.93142 0.90445 0.91386 0.89582 0.89838 0.80921 0.77196 0.89144 0.95650 0.93532 0.93006 0.95442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.95 37.16 0.33 -1.07 16 2 C -0.07 -0.66 1.77 -90.41 -0.16 -0.82 16 3 H 0.08 0.97 7.77 -51.93 -0.40 0.56 16 4 C -0.11 -0.78 5.18 -26.53 -0.14 -0.92 16 5 C -0.04 -0.33 6.31 -27.57 -0.17 -0.50 16 6 C 0.09 0.99 7.10 -82.34 -0.58 0.40 16 7 N -0.29 -3.35 12.68 33.75 0.43 -2.92 16 8 N -0.48 -4.51 7.37 30.35 0.22 -4.29 16 9 H 0.44 2.85 8.96 -182.44 -1.64 1.22 16 10 C 0.07 0.67 10.99 -17.36 -0.19 0.48 16 11 C -0.23 -2.43 5.41 -104.98 -0.57 -3.00 16 12 C -0.02 -0.21 2.33 -92.64 -0.22 -0.42 16 13 H 0.10 0.85 8.13 -51.93 -0.42 0.43 16 14 C 0.53 7.00 6.85 -10.99 -0.08 6.93 16 15 O -0.53 -9.01 13.82 5.56 0.08 -8.93 16 16 N -0.70 -8.80 4.98 -53.80 -0.27 -9.06 16 17 C 0.10 1.57 5.98 -67.93 -0.41 1.16 16 18 H 0.13 2.47 7.40 -51.93 -0.38 2.08 16 19 C -0.18 -3.27 7.06 -89.22 -0.63 -3.90 16 20 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 21 C 0.19 4.38 5.70 -2.41 -0.01 4.37 16 22 N -0.59 -15.01 3.38 -168.86 -0.57 -15.58 16 23 C -0.23 -6.26 10.35 -15.06 -0.16 -6.42 16 24 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 25 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 26 N -0.92 -26.59 10.86 55.49 0.60 -25.99 16 27 Si 0.91 21.73 29.56 -169.99 -5.03 16.71 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 C 0.16 3.24 7.04 -2.41 -0.02 3.22 16 32 C -0.18 -3.14 7.06 -89.22 -0.63 -3.77 16 33 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.07 0.87 6.36 -51.93 -0.33 0.54 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.44 8.09 -51.93 -0.42 0.01 16 38 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.17 1.27 5.93 -52.49 -0.31 0.96 16 42 H 0.39 3.80 6.49 -40.82 -0.27 3.54 16 43 H 0.09 2.38 6.51 -51.92 -0.34 2.04 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -33.55 370.62 -10.95 -44.49 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.28 Total: 4.49 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -3.72 Total: -4.51 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.42 Total: -57.84 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.55 -10.95 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025908173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.452 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds