Wall clock time and date at job start Tue Mar 31 2020 16:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.38778 * 2 1 4 4 C 1.53022 * 109.43286 * 240.13182 * 2 1 3 5 5 C 1.53366 * 109.75474 * 168.19249 * 4 2 1 6 6 C 1.50953 * 108.20019 * 50.64947 * 5 4 2 7 7 N 1.30132 * 128.28499 * 163.16815 * 6 5 4 8 8 N 1.40314 * 108.12295 * 180.30187 * 7 6 5 9 9 H 0.96998 * 125.99982 * 179.97438 * 8 7 6 10 10 C 1.35193 * 107.99274 * 359.95598 * 8 7 6 11 11 C 1.34580 * 107.62065 * 359.96638 * 10 8 7 12 12 C 1.50881 * 128.32737 * 180.13390 * 11 10 8 13 13 H 1.08999 * 109.71439 * 283.15957 * 12 11 10 14 14 C 1.50698 * 109.72047 * 43.76480 * 12 11 10 15 15 O 1.21277 * 120.00489 * 120.00078 * 14 12 11 16 16 N 1.34777 * 119.99860 * 299.99993 * 14 12 11 17 17 C 1.46501 * 119.99790 * 179.97438 * 16 14 12 18 18 H 1.09000 * 115.51849 * 350.41840 * 17 16 14 19 19 C 1.53002 * 117.44149 * 205.00015 * 17 16 14 20 20 H 1.08999 * 119.54103 * 5.71549 * 19 17 16 21 21 C 1.54386 * 118.12125 * 160.81314 * 19 17 16 22 22 N 1.48146 * 104.61980 * 87.19136 * 21 19 17 23 23 C 1.36937 * 127.83594 * 140.41656 * 22 21 19 24 24 H 1.07999 * 119.99545 * 195.57460 * 23 22 21 25 25 C 1.38809 * 120.00324 * 15.57101 * 23 22 21 26 26 N 1.31620 * 120.00184 * 9.09723 * 25 23 22 27 27 Si 1.86802 * 119.99989 * 189.09918 * 25 23 22 28 28 H 1.48500 * 109.47413 * 89.99945 * 27 25 23 29 29 H 1.48497 * 109.47239 * 209.99929 * 27 25 23 30 30 H 1.48507 * 109.47117 * 330.00058 * 27 25 23 31 31 C 1.48143 * 104.32484 * 320.41235 * 22 21 19 32 32 C 1.53001 * 117.44217 * 135.76396 * 17 16 14 33 33 H 1.09001 * 119.53732 * 355.88005 * 32 17 16 34 34 H 1.08994 * 109.47289 * 300.12449 * 1 2 3 35 35 H 1.09000 * 109.47059 * 60.12703 * 1 2 3 36 36 H 1.09005 * 109.46900 * 180.12598 * 1 2 3 37 37 H 1.09006 * 109.42780 * 48.10626 * 4 2 1 38 38 H 1.09006 * 109.37480 * 288.25380 * 4 2 1 39 39 H 1.08995 * 109.71988 * 290.97708 * 5 4 2 40 40 H 1.08996 * 109.75856 * 170.34534 * 5 4 2 41 41 H 1.07999 * 126.19310 * 179.97438 * 10 8 7 42 42 H 0.97003 * 120.00268 * 0.02562 * 16 14 12 43 43 H 1.09011 * 110.40891 * 205.97489 * 21 19 17 44 44 H 1.09000 * 110.40969 * 328.28314 * 21 19 17 45 45 H 0.97000 * 119.99808 * 180.02562 * 26 25 23 46 46 H 1.08993 * 110.40754 * 158.37059 * 31 22 21 47 47 H 1.09001 * 110.40896 * 280.80513 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0391 -0.7186 -1.2514 5 6 3.5439 -0.4719 -1.4147 6 6 4.2195 -0.7934 -0.1037 7 7 5.4828 -1.0113 0.1203 8 7 5.6440 -1.2768 1.4886 9 1 6.4815 -1.4747 1.9361 10 6 4.4271 -1.2081 2.0736 11 6 3.5306 -0.9102 1.1151 12 6 2.0403 -0.7204 1.2543 13 1 1.5530 -1.6911 1.3455 14 6 1.7456 0.1131 2.4747 15 8 1.1619 1.1700 2.3607 16 7 2.1307 -0.3161 3.6929 17 6 1.8447 0.4945 4.8792 18 1 1.4670 1.4979 4.6825 19 6 2.7540 0.3094 6.0957 20 1 3.6294 -0.3355 6.0191 21 6 2.7780 1.4248 7.1628 22 7 1.6687 1.0848 8.0840 23 6 1.6488 1.1889 9.4493 24 1 0.8847 0.6804 10.0185 25 6 2.6108 1.9477 10.1017 26 7 3.4301 2.7092 9.4081 27 14 2.7426 1.8880 11.9641 28 1 3.6828 0.8088 12.3596 29 1 3.2457 3.1916 12.4668 30 1 1.4038 1.6162 12.5466 31 6 0.5858 0.6070 7.1932 32 6 1.3087 -0.2299 6.1157 33 1 1.0926 -1.2969 6.0618 34 1 -0.3633 0.5157 0.8888 35 1 -0.3633 0.5119 -0.8911 36 1 -0.3633 -1.0277 0.0023 37 1 1.5124 -0.3391 -2.1270 38 1 1.8557 -1.7887 -1.1537 39 1 3.7195 0.5725 -1.6724 40 1 3.9398 -1.1158 -2.2000 41 1 4.2132 -1.3639 3.1206 42 1 2.5979 -1.1613 3.7841 43 1 3.7291 1.4209 7.6955 44 1 2.6062 2.3968 6.7005 45 1 4.1026 3.2392 9.8640 46 1 -0.1170 -0.0139 7.7486 47 1 0.0696 1.4510 6.7358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025908173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:06 Heat of formation + Delta-G solvation = 69.014367 kcal Electronic energy + Delta-G solvation = -28408.832001 eV Core-core repulsion = 24593.545668 eV Total energy + Delta-G solvation = -3815.286333 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.68896 -41.06406 -39.94516 -37.71412 -36.07260 -34.51314 -33.51540 -32.45796 -31.52303 -30.55718 -28.92919 -27.97992 -27.30155 -24.99797 -23.91183 -22.56435 -21.97752 -21.71176 -21.22604 -20.88165 -19.79665 -18.87521 -18.78611 -17.96807 -17.54286 -16.73923 -16.31422 -15.98743 -15.68237 -15.58995 -15.24660 -15.09456 -14.83706 -14.66120 -14.45471 -14.10261 -13.77343 -13.62631 -13.38179 -13.32911 -13.08733 -12.94011 -12.83045 -12.71049 -12.37049 -12.14032 -12.03824 -12.03153 -11.89623 -11.83160 -11.65337 -11.48510 -11.43900 -10.89121 -10.77315 -10.63889 -10.38460 -9.68374 -9.46221 -8.93262 -7.92754 -5.29653 0.88683 1.46418 1.46631 1.48421 1.57312 1.72685 1.90635 2.10496 2.47933 2.86316 3.27744 3.39821 3.59330 3.71469 3.73893 3.83768 3.85347 3.93668 4.06914 4.15310 4.31059 4.34141 4.40086 4.49130 4.52377 4.56047 4.65072 4.74644 4.84447 4.87611 4.92322 4.99345 4.99640 5.04327 5.15079 5.19486 5.28585 5.31735 5.41319 5.44488 5.51891 5.56092 5.59787 5.63870 5.64871 6.15663 6.38294 6.52919 6.67423 6.99383 7.25876 7.66408 8.44734 9.21034 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.002636 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.003986 B =10618.043535 C =11523.393173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 H 0.055 0.945 4 C -0.100 4.100 5 C -0.043 4.043 6 C 0.083 3.917 7 N -0.319 5.319 8 N -0.476 5.476 9 H 0.452 0.548 10 C 0.074 3.926 11 C -0.251 4.251 12 C -0.009 4.009 13 H 0.129 0.871 14 C 0.523 3.477 15 O -0.570 6.570 16 N -0.684 5.684 17 C 0.118 3.882 18 H 0.101 0.899 19 C -0.178 4.178 20 H 0.130 0.870 21 C 0.188 3.812 22 N -0.617 5.617 23 C -0.240 4.240 24 H 0.083 0.917 25 C -0.063 4.063 26 N -0.948 5.948 27 Si 0.982 3.018 28 H -0.283 1.283 29 H -0.296 1.296 30 H -0.267 1.267 31 C 0.147 3.853 32 C -0.164 4.164 33 H 0.138 0.862 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.194 0.806 42 H 0.412 0.588 43 H 0.059 0.941 44 H -0.008 1.008 45 H 0.250 0.750 46 H 0.064 0.936 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -13.967 -22.322 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 H 0.074 0.926 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.085 4.085 7 N -0.142 5.142 8 N -0.185 5.185 9 H 0.299 0.701 10 C -0.073 4.073 11 C -0.263 4.263 12 C -0.031 4.031 13 H 0.146 0.854 14 C 0.312 3.688 15 O -0.448 6.448 16 N -0.335 5.335 17 C 0.011 3.989 18 H 0.119 0.881 19 C -0.199 4.199 20 H 0.148 0.852 21 C 0.062 3.938 22 N -0.341 5.341 23 C -0.369 4.369 24 H 0.101 0.899 25 C -0.257 4.257 26 N -0.596 5.596 27 Si 0.809 3.191 28 H -0.209 1.209 29 H -0.223 1.223 30 H -0.192 1.192 31 C 0.022 3.978 32 C -0.185 4.185 33 H 0.156 0.844 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.211 0.789 42 H 0.251 0.749 43 H 0.077 0.923 44 H 0.010 0.990 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.541 -13.189 -22.696 26.256 hybrid contribution 0.322 0.281 2.186 2.228 sum 0.863 -12.908 -20.510 24.249 Atomic orbital electron populations 1.21860 0.94056 1.02410 1.02111 1.20951 0.96359 0.98875 0.92704 0.92603 1.21619 0.93219 1.01661 0.97319 1.20307 0.94706 1.02804 0.90355 1.22768 0.90283 0.97783 0.97691 1.76981 1.18811 1.24344 0.94040 1.46368 1.09276 1.57027 1.05783 0.70150 1.22480 0.85477 0.99573 0.99818 1.19770 0.95627 1.17353 0.93518 1.19790 0.91548 0.99889 0.91912 0.85361 1.21153 0.76911 0.86076 0.84706 1.90685 1.42558 1.25014 1.86535 1.45358 1.59375 1.24174 1.04642 1.21342 1.01556 0.95478 0.80543 0.88074 1.24319 0.95125 1.03004 0.97487 0.85216 1.20782 0.93120 0.91651 0.88218 1.45480 1.11036 1.75784 1.01760 1.19407 1.12515 1.23918 0.81063 0.89902 1.25763 0.99698 0.97449 1.02746 1.70103 1.23143 1.30802 1.35568 0.85037 0.78183 0.76495 0.79349 1.20939 1.22283 1.19176 1.21257 0.90949 0.95095 0.90522 1.24269 0.96615 1.00550 0.97074 0.84440 0.93959 0.91527 0.91204 0.88597 0.90048 0.89738 0.88392 0.78907 0.74917 0.92301 0.99050 0.94137 0.91796 0.96614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.95 71.98 0.64 -1.84 16 2 C -0.07 -1.21 1.77 -10.66 -0.02 -1.23 16 3 H 0.06 1.29 7.77 -2.39 -0.02 1.27 16 4 C -0.10 -1.14 5.18 30.72 0.16 -0.99 16 5 C -0.04 -0.60 6.31 30.05 0.19 -0.41 16 6 C 0.08 1.64 7.10 43.44 0.31 1.95 16 7 N -0.32 -6.99 12.68 -47.13 -0.60 -7.59 16 8 N -0.48 -8.11 7.37 -57.88 -0.43 -8.53 16 9 H 0.45 5.10 8.96 -213.19 -1.91 3.19 16 10 C 0.07 1.21 10.99 83.34 0.92 2.13 16 11 C -0.25 -4.66 5.41 -20.10 -0.11 -4.77 16 12 C -0.01 -0.17 2.33 -12.10 -0.03 -0.20 16 13 H 0.13 1.64 8.13 -2.39 -0.02 1.62 16 14 C 0.52 13.22 6.85 87.66 0.60 13.82 16 15 O -0.57 -19.54 13.82 -3.02 -0.04 -19.59 16 16 N -0.68 -15.58 4.98 -442.53 -2.20 -17.78 16 17 C 0.12 3.70 5.98 44.99 0.27 3.97 16 18 H 0.10 3.90 7.40 -2.39 -0.02 3.89 16 19 C -0.18 -6.24 7.06 -9.89 -0.07 -6.31 16 20 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 21 C 0.19 9.22 5.70 86.53 0.49 9.71 16 22 N -0.62 -31.76 3.38 -688.15 -2.33 -34.08 16 23 C -0.24 -13.40 10.35 84.03 0.87 -12.53 16 24 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 25 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 26 N -0.95 -57.07 10.86 21.65 0.24 -56.83 16 27 Si 0.98 45.16 29.56 68.60 2.03 47.19 16 28 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 29 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 30 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 31 C 0.15 6.10 7.04 86.54 0.61 6.71 16 32 C -0.16 -5.30 7.06 -9.89 -0.07 -5.37 16 33 H 0.14 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.04 0.99 6.36 -2.39 -0.02 0.97 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.10 0.77 8.09 -2.38 -0.02 0.75 16 38 H 0.08 0.76 8.10 -2.38 -0.02 0.74 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.19 2.17 5.93 -2.91 -0.02 2.15 16 42 H 0.41 6.39 6.49 -92.71 -0.60 5.79 16 43 H 0.06 3.23 6.51 -2.38 -0.02 3.22 16 44 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -76.24 370.62 0.39 -75.85 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -1.50 Total: 19.81 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 5.22 Total: 1.55 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -5.32 Total: -124.81 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.24 0.39 -75.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025908173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.866 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds