Wall clock time and date at job start Tue Mar 31 2020 16:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.42673 * 2 1 4 4 C 1.53020 * 109.42764 * 119.89560 * 2 1 3 5 5 C 1.53374 * 109.74655 * 191.80233 * 4 2 1 6 6 C 1.50948 * 108.20467 * 309.35306 * 5 4 2 7 7 N 1.30125 * 128.28302 * 196.66123 * 6 5 4 8 8 N 1.40313 * 108.12658 * 179.85423 * 7 6 5 9 9 H 0.96994 * 126.01043 * 180.02562 * 8 7 6 10 10 C 1.35202 * 107.98727 * 0.04117 * 8 7 6 11 11 C 1.34568 * 107.61944 * 0.03683 * 10 8 7 12 12 C 1.50883 * 128.32744 * 179.72230 * 11 10 8 13 13 H 1.08997 * 109.71613 * 77.06369 * 12 11 10 14 14 C 1.50701 * 109.72071 * 316.41065 * 12 11 10 15 15 O 1.21272 * 119.99875 * 241.26148 * 14 12 11 16 16 N 1.34781 * 119.99680 * 61.26272 * 14 12 11 17 17 C 1.46502 * 119.99613 * 180.02562 * 16 14 12 18 18 H 1.08997 * 115.51659 * 350.41305 * 17 16 14 19 19 C 1.53005 * 117.43985 * 204.99654 * 17 16 14 20 20 H 1.09002 * 119.53969 * 5.71615 * 19 17 16 21 21 C 1.54384 * 118.12138 * 160.80836 * 19 17 16 22 22 N 1.48149 * 104.61630 * 87.18875 * 21 19 17 23 23 C 1.36941 * 127.83551 * 140.41399 * 22 21 19 24 24 H 1.08000 * 119.99493 * 195.57641 * 23 22 21 25 25 C 1.38815 * 120.00055 * 15.57296 * 23 22 21 26 26 N 1.31612 * 119.99960 * 9.09947 * 25 23 22 27 27 Si 1.86801 * 119.99774 * 189.10030 * 25 23 22 28 28 H 1.48495 * 109.47269 * 60.00348 * 27 25 23 29 29 H 1.48499 * 109.46556 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.46974 * 300.00009 * 27 25 23 31 31 C 1.48146 * 104.32785 * 320.41597 * 22 21 19 32 32 C 1.53002 * 117.44069 * 135.75782 * 17 16 14 33 33 H 1.09001 * 119.54054 * 355.87726 * 32 17 16 34 34 H 1.09000 * 109.47235 * 300.10306 * 1 2 3 35 35 H 1.09000 * 109.47140 * 60.10450 * 1 2 3 36 36 H 1.08999 * 109.47380 * 180.10237 * 1 2 3 37 37 H 1.09002 * 109.42803 * 311.88366 * 4 2 1 38 38 H 1.08997 * 109.42672 * 71.77710 * 4 2 1 39 39 H 1.09008 * 109.71330 * 69.03054 * 5 4 2 40 40 H 1.09000 * 109.71542 * 189.66887 * 5 4 2 41 41 H 1.08002 * 126.18894 * 180.02562 * 10 8 7 42 42 H 0.96998 * 119.99790 * 359.97438 * 16 14 12 43 43 H 1.08996 * 110.40831 * 205.97311 * 21 19 17 44 44 H 1.08998 * 110.40653 * 328.41097 * 21 19 17 45 45 H 0.96995 * 120.00318 * 179.97438 * 26 25 23 46 46 H 1.08996 * 110.40936 * 158.36641 * 31 22 21 47 47 H 1.08996 * 110.40204 * 280.68582 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0390 -0.7193 1.2511 5 6 3.5439 -0.4726 1.4144 6 6 4.2195 -0.7935 0.1032 7 7 5.4831 -1.0083 -0.1213 8 7 5.6447 -1.2711 -1.4901 9 1 6.4825 -1.4664 -1.9382 10 6 4.4275 -1.2039 -2.0747 11 6 3.5306 -0.9096 -1.1156 12 6 2.0403 -0.7199 -1.2547 13 1 1.5529 -1.6906 -1.3454 14 6 1.7454 0.1141 -2.4747 15 8 1.1821 1.1816 -2.3578 16 7 2.1079 -0.3265 -3.6958 17 6 1.8218 0.4845 -4.8819 18 1 1.1746 1.3458 -4.7167 19 6 1.6974 -0.2445 -6.2213 20 1 1.7288 -1.3338 -6.2452 21 6 0.9706 0.4760 -7.3772 22 7 2.0258 1.2762 -8.0412 23 6 2.2028 1.4844 -9.3831 24 1 3.1414 1.8728 -9.7500 25 6 1.1760 1.1962 -10.2716 26 7 -0.0221 0.8952 -9.8174 27 14 1.4946 1.2356 -12.1118 28 1 2.5511 0.2493 -12.4524 29 1 0.2451 0.8940 -12.8378 30 1 1.9407 2.5955 -12.5078 31 6 2.8461 1.8000 -6.9243 32 6 2.9340 0.6284 -5.9227 33 1 3.9129 0.1906 -5.7272 34 1 -0.3634 0.5154 0.8891 35 1 -0.3633 0.5122 -0.8909 36 1 -0.3634 -1.0276 0.0018 37 1 1.5124 -0.3400 2.1268 38 1 1.8564 -1.7894 1.1535 39 1 3.7195 0.5718 1.6726 40 1 3.9392 -1.1174 2.1993 41 1 4.2137 -1.3583 -3.1221 42 1 2.5588 -1.1802 -3.7892 43 1 0.5498 -0.2500 -8.0728 44 1 0.1886 1.1274 -6.9870 45 1 -0.7397 0.6942 -10.4382 46 1 3.8402 2.0728 -7.2782 47 1 2.3579 2.6594 -6.4648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025908174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:11 Heat of formation + Delta-G solvation = 90.764188 kcal Electronic energy + Delta-G solvation = -28402.241994 eV Core-core repulsion = 24587.898805 eV Total energy + Delta-G solvation = -3814.343190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93857 -39.87815 -38.56601 -36.88436 -34.53158 -33.10123 -32.54201 -31.29932 -30.08872 -29.86022 -27.18812 -26.96010 -25.60579 -24.28853 -22.63923 -21.24142 -21.05929 -20.63230 -19.97785 -19.34135 -19.10003 -18.01915 -17.04171 -16.82788 -16.22951 -15.46494 -15.16381 -14.86776 -14.73512 -14.37984 -14.26470 -13.88110 -13.49091 -13.37103 -13.23902 -13.02165 -12.79089 -12.50754 -12.28595 -12.14817 -11.76410 -11.53628 -11.52702 -11.31647 -11.10222 -11.01141 -10.83992 -10.78678 -10.70335 -10.40999 -10.23329 -10.17773 -9.78819 -9.72492 -9.66312 -9.22184 -8.75242 -8.70742 -8.34611 -6.89282 -5.81971 -3.16364 1.59943 2.32883 2.53357 2.75020 3.15842 3.37320 3.41638 3.42860 4.10488 4.28103 4.39696 4.44802 4.50664 4.59770 4.70294 4.98973 5.05302 5.12836 5.18086 5.21916 5.29233 5.33967 5.35358 5.45337 5.52036 5.54241 5.64640 5.69862 5.75573 5.80121 5.81553 5.85698 5.95535 6.12133 6.19074 6.25857 6.31347 6.34689 6.49724 6.67176 6.78780 6.86377 6.98015 7.32398 7.38215 7.50291 7.55734 7.68728 8.18191 8.29501 9.08538 9.71240 10.48218 11.32341 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022830 B = 0.002584 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.182839 B =10832.384711 C =11699.418226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.041 4.041 6 C 0.092 3.908 7 N -0.288 5.288 8 N -0.480 5.480 9 H 0.441 0.559 10 C 0.070 3.930 11 C -0.232 4.232 12 C -0.021 4.021 13 H 0.102 0.898 14 C 0.526 3.474 15 O -0.529 6.529 16 N -0.700 5.700 17 C 0.097 3.903 18 H 0.132 0.868 19 C -0.180 4.180 20 H 0.102 0.898 21 C 0.185 3.815 22 N -0.593 5.593 23 C -0.229 4.229 24 H 0.076 0.924 25 C -0.005 4.005 26 N -0.915 5.915 27 Si 0.913 3.087 28 H -0.285 1.285 29 H -0.289 1.289 30 H -0.283 1.283 31 C 0.156 3.844 32 C -0.183 4.183 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.174 0.826 42 H 0.393 0.607 43 H 0.091 0.909 44 H 0.026 0.974 45 H 0.255 0.745 46 H 0.050 0.950 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 -7.827 22.014 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 H 0.102 0.898 4 C -0.149 4.149 5 C -0.080 4.080 6 C -0.077 4.077 7 N -0.110 5.110 8 N -0.188 5.188 9 H 0.285 0.715 10 C -0.076 4.076 11 C -0.244 4.244 12 C -0.044 4.044 13 H 0.120 0.880 14 C 0.312 3.688 15 O -0.405 6.405 16 N -0.350 5.350 17 C -0.009 4.009 18 H 0.149 0.851 19 C -0.201 4.201 20 H 0.120 0.880 21 C 0.059 3.941 22 N -0.316 5.316 23 C -0.357 4.357 24 H 0.094 0.906 25 C -0.202 4.202 26 N -0.561 5.561 27 Si 0.743 3.257 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.210 1.210 31 C 0.029 3.971 32 C -0.205 4.205 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.190 0.810 42 H 0.228 0.772 43 H 0.109 0.891 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.889 -7.119 22.334 24.432 hybrid contribution 0.237 -0.687 -1.899 2.033 sum 7.126 -7.806 20.435 23.007 Atomic orbital electron populations 1.21905 0.94239 1.01568 1.03116 1.20962 0.96243 1.00046 0.91611 0.89822 1.21668 0.93904 1.01215 0.98086 1.20185 0.94275 1.02552 0.90993 1.22327 0.90417 0.98355 0.96563 1.77020 1.18093 1.23114 0.92781 1.46305 1.08537 1.57699 1.06234 0.71468 1.22131 0.85682 1.00738 0.99084 1.19654 0.95472 1.16162 0.93123 1.19805 0.91269 0.99578 0.93731 0.87988 1.20456 0.77906 0.86537 0.83935 1.90685 1.41308 1.22466 1.85999 1.45549 1.60698 1.22861 1.05858 1.21855 1.01209 0.97402 0.80409 0.85069 1.24651 1.02038 0.98073 0.95353 0.87974 1.21061 0.89526 0.93914 0.89600 1.45164 1.30755 1.54940 1.00751 1.18945 0.97695 1.39121 0.79934 0.90605 1.24899 0.94932 1.02009 0.98353 1.69878 1.00583 1.52287 1.33333 0.86187 0.76894 0.77952 0.84642 1.21112 1.21513 1.20958 1.21104 0.95745 0.92236 0.88017 1.24342 0.93318 1.02264 1.00547 0.88262 0.92529 0.90923 0.93082 0.90428 0.91361 0.89586 0.89832 0.80953 0.77189 0.89073 0.95617 0.93445 0.93127 0.95469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.95 37.16 0.33 -1.09 16 2 C -0.07 -0.66 1.77 -90.41 -0.16 -0.82 16 3 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 4 C -0.11 -0.78 5.18 -26.53 -0.14 -0.92 16 5 C -0.04 -0.32 6.31 -27.57 -0.17 -0.49 16 6 C 0.09 0.97 7.10 -82.35 -0.58 0.39 16 7 N -0.29 -3.27 12.68 33.75 0.43 -2.84 16 8 N -0.48 -4.34 7.37 30.35 0.22 -4.12 16 9 H 0.44 2.66 8.96 -182.44 -1.64 1.03 16 10 C 0.07 0.64 11.01 -17.37 -0.19 0.45 16 11 C -0.23 -2.37 5.41 -104.99 -0.57 -2.94 16 12 C -0.02 -0.22 2.33 -92.63 -0.22 -0.43 16 13 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 14 C 0.53 6.99 6.80 -10.98 -0.07 6.92 16 15 O -0.53 -9.01 13.86 5.56 0.08 -8.93 16 16 N -0.70 -8.78 4.96 -53.80 -0.27 -9.05 16 17 C 0.10 1.57 5.98 -67.93 -0.41 1.17 16 18 H 0.13 2.46 7.40 -51.93 -0.38 2.08 16 19 C -0.18 -3.25 7.06 -89.22 -0.63 -3.88 16 20 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 21 C 0.19 4.37 5.70 -2.41 -0.01 4.36 16 22 N -0.59 -15.02 3.38 -168.86 -0.57 -15.59 16 23 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 24 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 25 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 26 N -0.91 -26.55 10.86 55.49 0.60 -25.95 16 27 Si 0.91 21.72 29.56 -169.99 -5.03 16.69 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 31 C 0.16 3.26 7.04 -2.41 -0.02 3.24 16 32 C -0.18 -3.14 7.06 -89.21 -0.63 -3.77 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 39 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.17 1.22 6.01 -52.49 -0.32 0.91 16 42 H 0.39 3.80 6.64 -40.82 -0.27 3.53 16 43 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -33.49 370.87 -10.95 -44.45 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.29 Total: 4.27 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.72 Total: -4.52 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.42 Total: -57.55 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.49 -10.95 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025908174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.213 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds