Wall clock time and date at job start Tue Mar 31 2020 16:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.42673 * 2 1 4 4 C 1.53020 * 109.42764 * 119.89560 * 2 1 3 5 5 C 1.53374 * 109.74655 * 191.80233 * 4 2 1 6 6 C 1.50948 * 108.20467 * 309.35306 * 5 4 2 7 7 N 1.30125 * 128.28302 * 196.66123 * 6 5 4 8 8 N 1.40313 * 108.12658 * 179.85423 * 7 6 5 9 9 H 0.96994 * 126.01043 * 180.02562 * 8 7 6 10 10 C 1.35202 * 107.98727 * 0.04117 * 8 7 6 11 11 C 1.34568 * 107.61944 * 0.03683 * 10 8 7 12 12 C 1.50883 * 128.32744 * 179.72230 * 11 10 8 13 13 H 1.08997 * 109.71613 * 77.06369 * 12 11 10 14 14 C 1.50701 * 109.72071 * 316.41065 * 12 11 10 15 15 O 1.21272 * 119.99875 * 241.26148 * 14 12 11 16 16 N 1.34781 * 119.99680 * 61.26272 * 14 12 11 17 17 C 1.46502 * 119.99613 * 180.02562 * 16 14 12 18 18 H 1.08997 * 115.51659 * 350.41305 * 17 16 14 19 19 C 1.53005 * 117.43985 * 204.99654 * 17 16 14 20 20 H 1.09002 * 119.53969 * 5.71615 * 19 17 16 21 21 C 1.54384 * 118.12138 * 160.80836 * 19 17 16 22 22 N 1.48149 * 104.61630 * 87.18875 * 21 19 17 23 23 C 1.36941 * 127.83551 * 140.41399 * 22 21 19 24 24 H 1.08000 * 119.99493 * 195.57641 * 23 22 21 25 25 C 1.38815 * 120.00055 * 15.57296 * 23 22 21 26 26 N 1.31612 * 119.99960 * 9.09947 * 25 23 22 27 27 Si 1.86801 * 119.99774 * 189.10030 * 25 23 22 28 28 H 1.48495 * 109.47269 * 60.00348 * 27 25 23 29 29 H 1.48499 * 109.46556 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.46974 * 300.00009 * 27 25 23 31 31 C 1.48146 * 104.32785 * 320.41597 * 22 21 19 32 32 C 1.53002 * 117.44069 * 135.75782 * 17 16 14 33 33 H 1.09001 * 119.54054 * 355.87726 * 32 17 16 34 34 H 1.09000 * 109.47235 * 300.10306 * 1 2 3 35 35 H 1.09000 * 109.47140 * 60.10450 * 1 2 3 36 36 H 1.08999 * 109.47380 * 180.10237 * 1 2 3 37 37 H 1.09002 * 109.42803 * 311.88366 * 4 2 1 38 38 H 1.08997 * 109.42672 * 71.77710 * 4 2 1 39 39 H 1.09008 * 109.71330 * 69.03054 * 5 4 2 40 40 H 1.09000 * 109.71542 * 189.66887 * 5 4 2 41 41 H 1.08002 * 126.18894 * 180.02562 * 10 8 7 42 42 H 0.96998 * 119.99790 * 359.97438 * 16 14 12 43 43 H 1.08996 * 110.40831 * 205.97311 * 21 19 17 44 44 H 1.08998 * 110.40653 * 328.41097 * 21 19 17 45 45 H 0.96995 * 120.00318 * 179.97438 * 26 25 23 46 46 H 1.08996 * 110.40936 * 158.36641 * 31 22 21 47 47 H 1.08996 * 110.40204 * 280.68582 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0280 0.0000 4 6 2.0390 -0.7193 1.2511 5 6 3.5439 -0.4726 1.4144 6 6 4.2195 -0.7935 0.1032 7 7 5.4831 -1.0083 -0.1213 8 7 5.6447 -1.2711 -1.4901 9 1 6.4825 -1.4664 -1.9382 10 6 4.4275 -1.2039 -2.0747 11 6 3.5306 -0.9096 -1.1156 12 6 2.0403 -0.7199 -1.2547 13 1 1.5529 -1.6906 -1.3454 14 6 1.7454 0.1141 -2.4747 15 8 1.1821 1.1816 -2.3578 16 7 2.1079 -0.3265 -3.6958 17 6 1.8218 0.4845 -4.8819 18 1 1.1746 1.3458 -4.7167 19 6 1.6974 -0.2445 -6.2213 20 1 1.7288 -1.3338 -6.2452 21 6 0.9706 0.4760 -7.3772 22 7 2.0258 1.2762 -8.0412 23 6 2.2028 1.4844 -9.3831 24 1 3.1414 1.8728 -9.7500 25 6 1.1760 1.1962 -10.2716 26 7 -0.0221 0.8952 -9.8174 27 14 1.4946 1.2356 -12.1118 28 1 2.5511 0.2493 -12.4524 29 1 0.2451 0.8940 -12.8378 30 1 1.9407 2.5955 -12.5078 31 6 2.8461 1.8000 -6.9243 32 6 2.9340 0.6284 -5.9227 33 1 3.9129 0.1906 -5.7272 34 1 -0.3634 0.5154 0.8891 35 1 -0.3633 0.5122 -0.8909 36 1 -0.3634 -1.0276 0.0018 37 1 1.5124 -0.3400 2.1268 38 1 1.8564 -1.7894 1.1535 39 1 3.7195 0.5718 1.6726 40 1 3.9392 -1.1174 2.1993 41 1 4.2137 -1.3583 -3.1221 42 1 2.5588 -1.1802 -3.7892 43 1 0.5498 -0.2500 -8.0728 44 1 0.1886 1.1274 -6.9870 45 1 -0.7397 0.6942 -10.4382 46 1 3.8402 2.0728 -7.2782 47 1 2.3579 2.6594 -6.4648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025908174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:10 Heat of formation + Delta-G solvation = 68.875658 kcal Electronic energy + Delta-G solvation = -28403.191152 eV Core-core repulsion = 24587.898805 eV Total energy + Delta-G solvation = -3815.292348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.68133 -41.06317 -39.94502 -37.71332 -36.06921 -34.50381 -33.51368 -32.45444 -31.52853 -30.55526 -28.93105 -27.97711 -27.29650 -24.99854 -23.90932 -22.56129 -21.97205 -21.70989 -21.20350 -20.89579 -19.79249 -18.87536 -18.76757 -17.97516 -17.54774 -16.73783 -16.30003 -15.98430 -15.66984 -15.59040 -15.30093 -15.05137 -14.81787 -14.65509 -14.46427 -14.10339 -13.78278 -13.66186 -13.35229 -13.32997 -13.09113 -12.92646 -12.84112 -12.68708 -12.37497 -12.15650 -12.06560 -12.02726 -11.88863 -11.82903 -11.65486 -11.48877 -11.43713 -10.89385 -10.76183 -10.64213 -10.37351 -9.68180 -9.45744 -8.92887 -7.92259 -5.29232 0.89617 1.46399 1.47708 1.49638 1.56517 1.72569 1.91448 2.10878 2.48420 2.86378 3.28105 3.39904 3.59291 3.71488 3.74523 3.84469 3.85331 3.93130 4.07385 4.15216 4.31293 4.34414 4.38038 4.48797 4.53791 4.56507 4.65288 4.74176 4.83078 4.87797 4.92602 4.98560 4.99652 5.03648 5.14862 5.19218 5.27505 5.31463 5.41942 5.44329 5.51526 5.55390 5.59538 5.64617 5.64857 6.16263 6.39683 6.53142 6.68359 6.99749 7.25953 7.66649 8.45076 9.21403 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022830 B = 0.002584 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.182839 B =10832.384711 C =11699.418226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 H 0.058 0.942 4 C -0.101 4.101 5 C -0.043 4.043 6 C 0.083 3.917 7 N -0.318 5.318 8 N -0.475 5.475 9 H 0.452 0.548 10 C 0.076 3.924 11 C -0.250 4.250 12 C -0.010 4.010 13 H 0.126 0.874 14 C 0.524 3.476 15 O -0.570 6.570 16 N -0.684 5.684 17 C 0.118 3.882 18 H 0.102 0.898 19 C -0.177 4.177 20 H 0.130 0.870 21 C 0.188 3.812 22 N -0.616 5.616 23 C -0.244 4.244 24 H 0.082 0.918 25 C -0.062 4.062 26 N -0.948 5.948 27 Si 0.982 3.018 28 H -0.274 1.274 29 H -0.294 1.294 30 H -0.277 1.277 31 C 0.148 3.852 32 C -0.165 4.165 33 H 0.137 0.863 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.195 0.805 42 H 0.413 0.587 43 H 0.060 0.940 44 H -0.007 1.007 45 H 0.250 0.750 46 H 0.062 0.938 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.980 -9.647 23.238 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.139 4.139 5 C -0.081 4.081 6 C -0.085 4.085 7 N -0.141 5.141 8 N -0.184 5.184 9 H 0.299 0.701 10 C -0.072 4.072 11 C -0.262 4.262 12 C -0.033 4.033 13 H 0.143 0.857 14 C 0.312 3.688 15 O -0.448 6.448 16 N -0.335 5.335 17 C 0.011 3.989 18 H 0.120 0.880 19 C -0.198 4.198 20 H 0.148 0.852 21 C 0.062 3.938 22 N -0.340 5.340 23 C -0.372 4.372 24 H 0.100 0.900 25 C -0.255 4.255 26 N -0.595 5.595 27 Si 0.809 3.191 28 H -0.200 1.200 29 H -0.220 1.220 30 H -0.202 1.202 31 C 0.022 3.978 32 C -0.186 4.186 33 H 0.155 0.845 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.212 0.788 42 H 0.251 0.749 43 H 0.078 0.922 44 H 0.011 0.989 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 8.652 -8.966 23.591 26.679 hybrid contribution -0.299 -0.024 -2.243 2.263 sum 8.352 -8.990 21.347 24.623 Atomic orbital electron populations 1.21863 0.94262 1.02340 1.02052 1.20949 0.96178 0.98983 0.92719 0.92395 1.21619 0.93359 1.01589 0.97299 1.20302 0.94588 1.02846 0.90413 1.22743 0.90303 0.97815 0.97640 1.76978 1.18725 1.24362 0.94048 1.46356 1.09221 1.57083 1.05708 0.70099 1.22465 0.85416 0.99482 0.99832 1.19738 0.95464 1.17433 0.93580 1.19784 0.91747 0.99793 0.91931 0.85656 1.21142 0.76716 0.86234 0.84721 1.90684 1.43047 1.24511 1.86573 1.45341 1.60576 1.23169 1.04435 1.21346 1.00014 0.96470 0.81072 0.88018 1.24326 1.01821 0.99031 0.94604 0.85216 1.20800 0.89337 0.92884 0.90792 1.45469 1.31551 1.55869 1.01149 1.19358 0.97939 1.38533 0.81385 0.90023 1.25761 0.94737 1.02259 1.02782 1.70085 1.01357 1.53621 1.34437 0.85116 0.76583 0.78222 0.79164 1.19993 1.21999 1.20247 1.21239 0.95373 0.93355 0.87844 1.24253 0.94845 0.99933 0.99576 0.84488 0.91461 0.94136 0.91328 0.88631 0.90174 0.89637 0.88419 0.78826 0.74899 0.92207 0.98898 0.94048 0.91993 0.96759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.95 71.98 0.64 -1.95 16 2 C -0.07 -1.21 1.77 -10.66 -0.02 -1.23 16 3 H 0.06 1.32 7.75 -2.38 -0.02 1.30 16 4 C -0.10 -1.15 5.18 30.73 0.16 -0.99 16 5 C -0.04 -0.58 6.31 30.05 0.19 -0.39 16 6 C 0.08 1.58 7.10 43.44 0.31 1.89 16 7 N -0.32 -6.63 12.68 -47.14 -0.60 -7.23 16 8 N -0.47 -7.42 7.37 -57.88 -0.43 -7.85 16 9 H 0.45 4.36 8.96 -213.19 -1.91 2.45 16 10 C 0.08 1.15 11.01 83.33 0.92 2.06 16 11 C -0.25 -4.48 5.41 -20.10 -0.11 -4.59 16 12 C -0.01 -0.19 2.33 -12.10 -0.03 -0.22 16 13 H 0.13 1.68 8.13 -2.39 -0.02 1.66 16 14 C 0.52 13.25 6.80 87.66 0.60 13.85 16 15 O -0.57 -19.60 13.86 -3.01 -0.04 -19.64 16 16 N -0.68 -15.56 4.96 -442.52 -2.20 -17.76 16 17 C 0.12 3.71 5.98 44.99 0.27 3.97 16 18 H 0.10 3.92 7.40 -2.39 -0.02 3.90 16 19 C -0.18 -6.21 7.06 -9.88 -0.07 -6.28 16 20 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 21 C 0.19 9.19 5.70 86.53 0.49 9.68 16 22 N -0.62 -31.79 3.38 -688.16 -2.33 -34.12 16 23 C -0.24 -13.61 10.35 84.03 0.87 -12.74 16 24 H 0.08 4.34 7.85 -2.91 -0.02 4.31 16 25 C -0.06 -3.48 5.40 84.86 0.46 -3.02 16 26 N -0.95 -56.90 10.86 21.65 0.24 -56.66 16 27 Si 0.98 45.10 29.56 68.60 2.03 47.13 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 30 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 31 C 0.15 6.14 7.04 86.53 0.61 6.75 16 32 C -0.16 -5.32 7.06 -9.88 -0.07 -5.39 16 33 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.98 6.40 -2.39 -0.02 0.96 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.78 8.09 -2.39 -0.02 0.76 16 38 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 39 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.20 1.92 6.01 -2.91 -0.02 1.90 16 42 H 0.41 6.37 6.64 -92.71 -0.62 5.75 16 43 H 0.06 3.28 6.51 -2.39 -0.02 3.26 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -76.07 370.87 0.38 -75.69 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -1.52 Total: 19.03 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 5.22 Total: 1.42 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -5.31 Total: -123.62 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.04 Total: -19.64 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.07 0.38 -75.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025908174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.567 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds