Wall clock time and date at job start Tue Mar 31 2020 16:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.39033 * 2 1 4 4 C 1.53391 * 109.42996 * 240.12499 * 2 1 3 5 5 C 1.50876 * 108.19205 * 189.38941 * 4 2 1 6 6 C 1.34578 * 128.32341 * 196.74026 * 5 4 2 7 7 N 1.35197 * 107.62001 * 179.71137 * 6 5 4 8 8 H 0.96993 * 126.00735 * 180.02562 * 7 6 5 9 9 N 1.40319 * 107.98966 * 0.04393 * 7 6 5 10 10 C 1.30132 * 108.12567 * 0.03775 * 9 7 6 11 11 C 1.50949 * 128.28736 * 179.86627 * 10 9 7 12 12 H 1.08998 * 109.71356 * 76.92436 * 11 10 9 13 13 C 1.50703 * 109.71406 * 316.32557 * 11 10 9 14 14 O 1.21276 * 119.99476 * 239.72341 * 13 11 10 15 15 N 1.34781 * 119.99997 * 60.00325 * 13 11 10 16 16 C 1.46491 * 119.99785 * 179.72234 * 15 13 11 17 17 H 1.08999 * 115.52211 * 350.41669 * 16 15 13 18 18 C 1.53002 * 117.44283 * 204.99565 * 16 15 13 19 19 H 1.09001 * 119.53633 * 5.72010 * 18 16 15 20 20 C 1.54391 * 118.12157 * 160.80984 * 18 16 15 21 21 N 1.48143 * 104.61708 * 87.19461 * 20 18 16 22 22 C 1.36937 * 127.83808 * 140.41474 * 21 20 18 23 23 H 1.08004 * 120.00151 * 195.57655 * 22 21 20 24 24 C 1.38813 * 120.00061 * 15.56990 * 22 21 20 25 25 N 1.31619 * 120.00016 * 9.09919 * 24 22 21 26 26 Si 1.86794 * 120.00248 * 189.10046 * 24 22 21 27 27 H 1.48493 * 109.47501 * 89.99790 * 26 24 22 28 28 H 1.48499 * 109.47282 * 210.00341 * 26 24 22 29 29 H 1.48507 * 109.47076 * 330.00088 * 26 24 22 30 30 C 1.48144 * 104.32271 * 320.41145 * 21 20 18 31 31 C 1.52999 * 117.44426 * 135.75885 * 16 15 13 32 32 H 1.09002 * 119.53677 * 355.88233 * 31 16 15 33 33 C 1.53025 * 109.42672 * 119.87290 * 2 1 3 34 34 H 1.08991 * 109.47332 * 179.87685 * 1 2 3 35 35 H 1.08998 * 109.46756 * 299.88033 * 1 2 3 36 36 H 1.09005 * 109.46798 * 59.86949 * 1 2 3 37 37 H 1.08995 * 109.71331 * 69.70881 * 4 2 1 38 38 H 1.09002 * 109.75001 * 309.08589 * 4 2 1 39 39 H 1.07998 * 126.18735 * 359.75396 * 6 5 4 40 40 H 0.96999 * 119.99905 * 359.71905 * 15 13 11 41 41 H 1.09004 * 110.40305 * 205.97953 * 20 18 16 42 42 H 1.08997 * 110.41035 * 328.40441 * 20 18 16 43 43 H 0.96998 * 120.00153 * 180.02562 * 25 24 22 44 44 H 1.09001 * 110.40323 * 158.36883 * 30 21 20 45 45 H 1.09000 * 110.40960 * 280.68321 * 30 21 20 46 46 H 1.09001 * 109.42866 * 71.71701 * 33 2 1 47 47 H 1.08998 * 109.42670 * 311.88257 * 33 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0403 -0.7205 -1.2543 5 6 3.5306 -0.9103 -1.1151 6 6 4.4275 -1.2050 -2.0742 7 7 5.6447 -1.2717 -1.4896 8 1 6.4825 -1.4675 -1.9375 9 7 5.4831 -1.0084 -0.1208 10 6 4.2195 -0.7937 0.1037 11 6 3.5439 -0.4721 1.4147 12 1 3.7203 0.5721 1.6728 13 6 4.0904 -1.3633 2.5002 14 8 3.3469 -2.1039 3.1082 15 7 5.4043 -1.3332 2.7991 16 6 5.9343 -2.1951 3.8584 17 1 5.1874 -2.7078 4.4645 18 6 7.2206 -1.7464 4.5550 19 1 7.6484 -0.7723 4.3178 20 6 7.5532 -2.3579 5.9331 21 7 8.2927 -3.6031 5.6209 22 6 9.3828 -4.1179 6.2703 23 1 9.9770 -4.8881 5.8010 24 6 9.7242 -3.6499 7.5318 25 7 8.9069 -2.8465 8.1791 26 14 11.3435 -4.1601 8.3106 27 1 12.4013 -3.1875 7.9359 28 1 11.1958 -4.1860 9.7880 29 1 11.7210 -5.5125 7.8271 30 6 7.5852 -4.1649 4.4468 31 6 7.2416 -2.9379 3.5751 32 1 7.6995 -2.8626 2.5888 33 6 2.0390 -0.7188 1.2514 34 1 -0.3633 -1.0276 -0.0022 35 1 -0.3633 0.5120 0.8911 36 1 -0.3633 0.5159 -0.8889 37 1 1.8270 -0.1177 -2.1370 38 1 1.5529 -1.6912 -1.3455 39 1 4.2137 -1.3594 -3.1215 40 1 5.9988 -0.7409 2.3127 41 1 8.1804 -1.6776 6.5093 42 1 6.6376 -2.5862 6.4786 43 1 9.1456 -2.5192 9.0604 44 1 8.2366 -4.8480 3.9017 45 1 6.6757 -4.6772 4.7604 46 1 1.8555 -1.7889 1.1547 47 1 1.5124 -0.3391 2.1269 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025971316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:56 Heat of formation + Delta-G solvation = 86.625212 kcal Electronic energy + Delta-G solvation = -28101.227267 eV Core-core repulsion = 24286.704597 eV Total energy + Delta-G solvation = -3814.522669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.87032 -39.74012 -38.40910 -37.08243 -34.38505 -33.24352 -32.24936 -31.21392 -30.22568 -29.90894 -27.08649 -26.43393 -25.81195 -24.60834 -22.33420 -21.40760 -20.99645 -20.38646 -19.98033 -19.24134 -19.00902 -17.93407 -16.89974 -16.72132 -16.17577 -15.88039 -14.94783 -14.78388 -14.66358 -14.41364 -14.16870 -13.83934 -13.52868 -13.34661 -13.14261 -12.92940 -12.68647 -12.65845 -12.29550 -12.11848 -11.79121 -11.54694 -11.42509 -11.40206 -10.98202 -10.96091 -10.86162 -10.80850 -10.67226 -10.32310 -10.14818 -10.08272 -9.97096 -9.69612 -9.45795 -9.09983 -8.69962 -8.68447 -8.20481 -6.82645 -5.76211 -3.10271 1.61335 2.32636 2.50842 2.82251 3.26839 3.40798 3.45476 3.47648 4.10944 4.30218 4.41759 4.50520 4.56943 4.57797 4.77517 4.86937 5.07467 5.12352 5.21947 5.26953 5.34193 5.39410 5.44037 5.45383 5.48575 5.58875 5.63192 5.64034 5.75856 5.84074 5.90271 5.96480 5.99628 6.00323 6.21818 6.24555 6.30945 6.35302 6.60602 6.75580 6.92266 6.97876 7.00533 7.36313 7.40596 7.57365 7.72755 7.75551 8.24415 8.39302 9.14551 9.77149 10.55007 11.38230 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.002433 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.027221 B =11503.530597 C =12266.332550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.036 4.036 5 C -0.229 4.229 6 C 0.060 3.940 7 N -0.479 5.479 8 H 0.441 0.559 9 N -0.277 5.277 10 C 0.085 3.915 11 C -0.025 4.025 12 H 0.115 0.885 13 C 0.525 3.475 14 O -0.536 6.536 15 N -0.686 5.686 16 C 0.097 3.903 17 H 0.130 0.870 18 C -0.180 4.180 19 H 0.102 0.898 20 C 0.186 3.814 21 N -0.593 5.593 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.915 5.915 26 Si 0.913 3.087 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.156 3.844 31 C -0.181 4.181 32 H 0.101 0.899 33 C -0.092 4.092 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.177 0.823 40 H 0.403 0.597 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.254 0.746 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.079 0.921 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 8.764 -23.548 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.074 4.074 5 C -0.241 4.241 6 C -0.085 4.085 7 N -0.187 5.187 8 H 0.285 0.715 9 N -0.099 5.099 10 C -0.083 4.083 11 C -0.048 4.048 12 H 0.132 0.868 13 C 0.310 3.690 14 O -0.413 6.413 15 N -0.334 5.334 16 C -0.009 4.009 17 H 0.148 0.852 18 C -0.201 4.201 19 H 0.120 0.880 20 C 0.060 3.940 21 N -0.317 5.317 22 C -0.354 4.354 23 H 0.094 0.906 24 C -0.204 4.204 25 N -0.561 5.561 26 Si 0.744 3.256 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 C 0.029 3.971 31 C -0.202 4.202 32 H 0.119 0.881 33 C -0.130 4.130 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.194 0.806 40 H 0.238 0.762 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.045 0.955 46 H 0.097 0.903 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.476 8.139 -22.355 27.342 hybrid contribution 1.064 0.075 -0.689 1.270 sum -12.411 8.214 -23.044 27.432 Atomic orbital electron populations 1.21818 0.94582 1.02158 1.01817 1.21181 0.95757 0.99690 0.94235 0.90871 1.20076 0.89115 1.00481 0.97766 1.20062 0.97369 1.14590 0.92035 1.22058 0.85391 1.01737 0.99351 1.46301 1.08735 1.57673 1.06016 0.71512 1.76998 1.17882 1.22024 0.93020 1.21843 0.90936 1.00119 0.95449 1.19952 0.96206 1.00703 0.87977 0.86778 1.20154 0.82258 0.83099 0.83513 1.90703 1.57729 1.40493 1.52377 1.45346 1.08443 1.42573 1.37056 1.21819 0.90724 0.96447 0.91907 0.85235 1.24626 0.98562 0.97979 0.98939 0.88014 1.21058 0.95373 0.88708 0.88903 1.45176 1.32320 1.21939 1.32228 1.19000 1.00797 1.18683 0.96892 0.90569 1.24902 0.98918 1.00578 0.95962 1.69900 1.35325 1.37299 1.13618 0.86101 0.83056 0.78104 0.78386 1.21558 1.21651 1.20566 1.21108 0.95235 0.92051 0.88662 1.24320 1.00022 0.96633 0.99272 0.88055 1.21482 0.90911 1.02547 0.98084 0.92397 0.92349 0.92608 0.91174 0.91035 0.80632 0.76184 0.89095 0.95644 0.93556 0.93169 0.95524 0.90267 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.15 37.16 0.34 -0.53 16 2 C -0.09 -0.65 2.66 -90.40 -0.24 -0.89 16 3 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 4 C -0.04 -0.25 5.57 -27.59 -0.15 -0.41 16 5 C -0.23 -2.09 5.89 -104.98 -0.62 -2.70 16 6 C 0.06 0.44 11.95 -17.36 -0.21 0.23 16 7 N -0.48 -4.08 7.37 30.35 0.22 -3.86 16 8 H 0.44 2.47 8.96 -182.44 -1.64 0.83 16 9 N -0.28 -3.29 11.46 33.75 0.39 -2.90 16 10 C 0.09 0.96 6.38 -82.34 -0.53 0.44 16 11 C -0.03 -0.28 2.91 -92.61 -0.27 -0.55 16 12 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 13 C 0.52 8.00 7.14 -10.98 -0.08 7.92 16 14 O -0.54 -10.03 15.43 5.56 0.09 -9.95 16 15 N -0.69 -10.55 5.24 -53.81 -0.28 -10.83 16 16 C 0.10 1.78 5.97 -67.93 -0.41 1.37 16 17 H 0.13 2.65 7.40 -51.93 -0.38 2.27 16 18 C -0.18 -3.59 7.06 -89.22 -0.63 -4.22 16 19 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 20 C 0.19 4.62 5.70 -2.41 -0.01 4.61 16 21 N -0.59 -15.72 3.38 -168.86 -0.57 -16.29 16 22 C -0.23 -6.42 10.35 -15.06 -0.16 -6.58 16 23 H 0.08 2.10 7.85 -52.48 -0.41 1.68 16 24 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 25 N -0.92 -27.26 10.86 55.49 0.60 -26.66 16 26 Si 0.91 22.27 29.56 -169.99 -5.03 17.25 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 C 0.16 3.49 7.04 -2.41 -0.02 3.47 16 31 C -0.18 -3.50 7.06 -89.22 -0.63 -4.13 16 32 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 33 C -0.09 -0.90 3.91 -26.53 -0.10 -1.01 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 39 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.40 5.57 7.90 -40.82 -0.32 5.25 16 41 H 0.09 2.49 6.51 -51.93 -0.34 2.15 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.92 7.78 -51.93 -0.40 0.51 16 47 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -34.53 377.29 -11.24 -45.78 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.54 Total: 5.03 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.80 Total: -3.26 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.36 Total: -60.53 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.53 -11.24 -45.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025971316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.401 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds