Wall clock time and date at job start Tue Mar 31 2020 16:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.39033 * 2 1 4 4 C 1.53391 * 109.42996 * 240.12499 * 2 1 3 5 5 C 1.50876 * 108.19205 * 189.38941 * 4 2 1 6 6 C 1.34578 * 128.32341 * 196.74026 * 5 4 2 7 7 N 1.35197 * 107.62001 * 179.71137 * 6 5 4 8 8 H 0.96993 * 126.00735 * 180.02562 * 7 6 5 9 9 N 1.40319 * 107.98966 * 0.04393 * 7 6 5 10 10 C 1.30132 * 108.12567 * 0.03775 * 9 7 6 11 11 C 1.50949 * 128.28736 * 179.86627 * 10 9 7 12 12 H 1.08998 * 109.71356 * 76.92436 * 11 10 9 13 13 C 1.50703 * 109.71406 * 316.32557 * 11 10 9 14 14 O 1.21276 * 119.99476 * 239.72341 * 13 11 10 15 15 N 1.34781 * 119.99997 * 60.00325 * 13 11 10 16 16 C 1.46491 * 119.99785 * 179.72234 * 15 13 11 17 17 H 1.08999 * 115.52211 * 350.41669 * 16 15 13 18 18 C 1.53002 * 117.44283 * 204.99565 * 16 15 13 19 19 H 1.09001 * 119.53633 * 5.72010 * 18 16 15 20 20 C 1.54391 * 118.12157 * 160.80984 * 18 16 15 21 21 N 1.48143 * 104.61708 * 87.19461 * 20 18 16 22 22 C 1.36937 * 127.83808 * 140.41474 * 21 20 18 23 23 H 1.08004 * 120.00151 * 195.57655 * 22 21 20 24 24 C 1.38813 * 120.00061 * 15.56990 * 22 21 20 25 25 N 1.31619 * 120.00016 * 9.09919 * 24 22 21 26 26 Si 1.86794 * 120.00248 * 189.10046 * 24 22 21 27 27 H 1.48493 * 109.47501 * 89.99790 * 26 24 22 28 28 H 1.48499 * 109.47282 * 210.00341 * 26 24 22 29 29 H 1.48507 * 109.47076 * 330.00088 * 26 24 22 30 30 C 1.48144 * 104.32271 * 320.41145 * 21 20 18 31 31 C 1.52999 * 117.44426 * 135.75885 * 16 15 13 32 32 H 1.09002 * 119.53677 * 355.88233 * 31 16 15 33 33 C 1.53025 * 109.42672 * 119.87290 * 2 1 3 34 34 H 1.08991 * 109.47332 * 179.87685 * 1 2 3 35 35 H 1.08998 * 109.46756 * 299.88033 * 1 2 3 36 36 H 1.09005 * 109.46798 * 59.86949 * 1 2 3 37 37 H 1.08995 * 109.71331 * 69.70881 * 4 2 1 38 38 H 1.09002 * 109.75001 * 309.08589 * 4 2 1 39 39 H 1.07998 * 126.18735 * 359.75396 * 6 5 4 40 40 H 0.96999 * 119.99905 * 359.71905 * 15 13 11 41 41 H 1.09004 * 110.40305 * 205.97953 * 20 18 16 42 42 H 1.08997 * 110.41035 * 328.40441 * 20 18 16 43 43 H 0.96998 * 120.00153 * 180.02562 * 25 24 22 44 44 H 1.09001 * 110.40323 * 158.36883 * 30 21 20 45 45 H 1.09000 * 110.40960 * 280.68321 * 30 21 20 46 46 H 1.09001 * 109.42866 * 71.71701 * 33 2 1 47 47 H 1.08998 * 109.42670 * 311.88257 * 33 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0403 -0.7205 -1.2543 5 6 3.5306 -0.9103 -1.1151 6 6 4.4275 -1.2050 -2.0742 7 7 5.6447 -1.2717 -1.4896 8 1 6.4825 -1.4675 -1.9375 9 7 5.4831 -1.0084 -0.1208 10 6 4.2195 -0.7937 0.1037 11 6 3.5439 -0.4721 1.4147 12 1 3.7203 0.5721 1.6728 13 6 4.0904 -1.3633 2.5002 14 8 3.3469 -2.1039 3.1082 15 7 5.4043 -1.3332 2.7991 16 6 5.9343 -2.1951 3.8584 17 1 5.1874 -2.7078 4.4645 18 6 7.2206 -1.7464 4.5550 19 1 7.6484 -0.7723 4.3178 20 6 7.5532 -2.3579 5.9331 21 7 8.2927 -3.6031 5.6209 22 6 9.3828 -4.1179 6.2703 23 1 9.9770 -4.8881 5.8010 24 6 9.7242 -3.6499 7.5318 25 7 8.9069 -2.8465 8.1791 26 14 11.3435 -4.1601 8.3106 27 1 12.4013 -3.1875 7.9359 28 1 11.1958 -4.1860 9.7880 29 1 11.7210 -5.5125 7.8271 30 6 7.5852 -4.1649 4.4468 31 6 7.2416 -2.9379 3.5751 32 1 7.6995 -2.8626 2.5888 33 6 2.0390 -0.7188 1.2514 34 1 -0.3633 -1.0276 -0.0022 35 1 -0.3633 0.5120 0.8911 36 1 -0.3633 0.5159 -0.8889 37 1 1.8270 -0.1177 -2.1370 38 1 1.5529 -1.6912 -1.3455 39 1 4.2137 -1.3594 -3.1215 40 1 5.9988 -0.7409 2.3127 41 1 8.1804 -1.6776 6.5093 42 1 6.6376 -2.5862 6.4786 43 1 9.1456 -2.5192 9.0604 44 1 8.2366 -4.8480 3.9017 45 1 6.6757 -4.6772 4.7604 46 1 1.8555 -1.7889 1.1547 47 1 1.5124 -0.3391 2.1269 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025971316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:55 Heat of formation + Delta-G solvation = 63.962652 kcal Electronic energy + Delta-G solvation = -28102.209989 eV Core-core repulsion = 24286.704597 eV Total energy + Delta-G solvation = -3815.505392 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.57608 -41.09330 -39.92607 -37.85026 -36.08916 -34.55001 -33.57875 -31.99459 -31.80724 -30.73183 -28.97109 -27.72102 -26.94146 -25.65637 -23.65219 -22.66452 -21.96392 -21.59178 -21.19674 -20.93036 -19.81616 -18.89377 -18.58703 -17.90218 -17.66080 -16.77096 -16.70294 -15.85158 -15.64609 -15.50467 -15.26787 -15.07605 -14.79159 -14.67769 -14.46403 -14.02138 -13.80034 -13.71274 -13.38323 -13.22241 -13.16920 -12.95848 -12.90114 -12.72801 -12.46181 -12.16430 -12.10425 -12.05299 -11.89345 -11.69353 -11.62401 -11.48104 -11.42171 -11.00048 -10.85238 -10.71185 -10.34776 -9.71629 -9.31521 -8.95483 -7.93478 -5.31055 0.95374 1.39389 1.45578 1.47953 1.57050 1.72265 1.96756 2.08456 2.47063 2.81465 3.26113 3.37543 3.54287 3.58202 3.74889 3.81366 3.89208 3.97690 4.09174 4.12559 4.30862 4.32117 4.35833 4.42886 4.48514 4.62667 4.73525 4.80072 4.84974 4.88434 4.93207 4.93518 5.00630 5.06991 5.16074 5.23499 5.29933 5.33259 5.38897 5.42531 5.47427 5.51677 5.61108 5.62917 5.67483 6.13765 6.46800 6.50197 6.69161 6.97669 7.16620 7.64125 8.43237 9.20591 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.002433 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.027221 B =11503.530597 C =12266.332550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.033 4.033 5 C -0.248 4.248 6 C 0.076 3.924 7 N -0.474 5.474 8 H 0.452 0.548 9 N -0.316 5.316 10 C 0.067 3.933 11 C -0.017 4.017 12 H 0.135 0.865 13 C 0.522 3.478 14 O -0.576 6.576 15 N -0.676 5.676 16 C 0.117 3.883 17 H 0.106 0.894 18 C -0.176 4.176 19 H 0.124 0.876 20 C 0.191 3.809 21 N -0.616 5.616 22 C -0.243 4.243 23 H 0.083 0.917 24 C -0.063 4.063 25 N -0.948 5.948 26 Si 0.985 3.015 27 H -0.283 1.283 28 H -0.294 1.294 29 H -0.267 1.267 30 C 0.151 3.849 31 C -0.166 4.166 32 H 0.126 0.874 33 C -0.088 4.088 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.218 0.782 40 H 0.415 0.585 41 H 0.061 0.939 42 H -0.003 1.003 43 H 0.251 0.749 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.056 0.944 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.178 9.556 -26.828 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.071 4.071 5 C -0.260 4.260 6 C -0.071 4.071 7 N -0.184 5.184 8 H 0.298 0.702 9 N -0.139 5.139 10 C -0.100 4.100 11 C -0.040 4.040 12 H 0.153 0.847 13 C 0.309 3.691 14 O -0.455 6.455 15 N -0.325 5.325 16 C 0.009 3.991 17 H 0.124 0.876 18 C -0.197 4.197 19 H 0.141 0.859 20 C 0.065 3.935 21 N -0.340 5.340 22 C -0.371 4.371 23 H 0.100 0.900 24 C -0.257 4.257 25 N -0.596 5.596 26 Si 0.812 3.188 27 H -0.210 1.210 28 H -0.220 1.220 29 H -0.192 1.192 30 C 0.025 3.975 31 C -0.187 4.187 32 H 0.143 0.857 33 C -0.127 4.127 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.235 0.765 40 H 0.252 0.748 41 H 0.080 0.920 42 H 0.015 0.985 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.074 0.926 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.395 8.940 -25.686 30.317 hybrid contribution 0.987 -0.226 0.292 1.054 sum -12.408 8.714 -25.394 29.577 Atomic orbital electron populations 1.21802 0.93617 1.02131 1.02597 1.21149 0.96452 0.99650 0.92963 0.90071 1.20111 0.87820 1.00795 0.98338 1.20390 0.98614 1.15404 0.91574 1.22715 0.84225 0.99291 1.00838 1.46369 1.09915 1.56962 1.05143 0.70181 1.76889 1.18379 1.23556 0.95062 1.21878 0.91331 1.00958 0.95870 1.19953 0.96737 1.00547 0.86789 0.84746 1.20961 0.81594 0.82843 0.83684 1.90686 1.58571 1.42308 1.53955 1.45232 1.08927 1.42158 1.36166 1.21387 0.89604 0.96033 0.92050 0.87586 1.24321 1.00349 0.98912 0.96119 0.85856 1.20791 0.93398 0.88234 0.91115 1.45469 1.32402 1.22892 1.33211 1.19404 1.01508 1.18826 0.97397 0.89969 1.25804 1.02422 1.00902 0.96553 1.70101 1.37168 1.38561 1.13724 0.84996 0.78674 0.78270 0.76862 1.20960 1.22009 1.19169 1.21214 0.94756 0.93479 0.88021 1.24200 1.00614 0.94528 0.99397 0.85662 1.21475 0.90127 1.01477 0.99622 0.92855 0.92467 0.90941 0.88810 0.91199 0.76506 0.74830 0.92034 0.98488 0.93996 0.91972 0.96388 0.92555 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.15 71.98 0.66 -0.78 16 2 C -0.08 -1.04 2.66 -10.65 -0.03 -1.07 16 3 H 0.08 0.90 8.10 -2.39 -0.02 0.89 16 4 C -0.03 -0.36 5.57 30.03 0.17 -0.20 16 5 C -0.25 -3.87 5.89 -20.10 -0.12 -3.99 16 6 C 0.08 0.84 11.95 83.34 1.00 1.84 16 7 N -0.47 -6.83 7.37 -57.88 -0.43 -7.25 16 8 H 0.45 3.88 8.96 -213.19 -1.91 1.97 16 9 N -0.32 -6.93 11.46 -47.13 -0.54 -7.47 16 10 C 0.07 1.41 6.38 43.44 0.28 1.69 16 11 C -0.02 -0.37 2.91 -12.08 -0.04 -0.41 16 12 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 13 C 0.52 15.90 7.14 87.66 0.63 16.53 16 14 O -0.58 -22.15 15.43 -3.02 -0.05 -22.19 16 15 N -0.68 -20.39 5.24 -442.54 -2.32 -22.71 16 16 C 0.12 4.30 5.97 44.99 0.27 4.57 16 17 H 0.11 4.51 7.40 -2.39 -0.02 4.50 16 18 C -0.18 -7.05 7.06 -9.89 -0.07 -7.12 16 19 H 0.12 4.43 8.14 -2.39 -0.02 4.41 16 20 C 0.19 9.89 5.70 86.54 0.49 10.38 16 21 N -0.62 -33.39 3.38 -688.15 -2.33 -35.72 16 22 C -0.24 -14.03 10.35 84.03 0.87 -13.16 16 23 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 24 C -0.06 -3.67 5.40 84.86 0.46 -3.21 16 25 N -0.95 -58.34 10.86 21.65 0.24 -58.10 16 26 Si 0.98 46.28 29.56 68.60 2.03 48.31 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 30 C 0.15 6.80 7.04 86.53 0.61 7.41 16 31 C -0.17 -6.31 7.06 -9.89 -0.07 -6.38 16 32 H 0.13 4.22 8.14 -2.39 -0.02 4.20 16 33 C -0.09 -1.69 3.91 30.73 0.12 -1.57 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 39 H 0.22 0.40 8.06 -2.91 -0.02 0.38 16 40 H 0.41 10.88 7.90 -92.71 -0.73 10.14 16 41 H 0.06 3.53 6.51 -2.38 -0.02 3.52 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 1.33 7.78 -2.39 -0.02 1.31 16 47 H 0.08 1.47 8.09 -2.39 -0.02 1.46 16 Total: -1.00 -77.44 377.29 0.18 -77.25 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -1.64 Total: 23.35 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.22 Total: 4.53 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.38 Total: -131.25 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -77.44 0.18 -77.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025971316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.215 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds