Wall clock time and date at job start Tue Mar 31 2020 17:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.90454 * 2 1 4 4 C 1.54906 * 110.99243 * 236.13632 * 2 1 3 5 5 N 1.47849 * 104.79322 * 204.83907 * 4 2 1 6 6 C 1.39007 * 110.99483 * 146.36160 * 5 4 2 7 7 C 1.39148 * 119.70019 * 179.28087 * 6 5 4 8 8 C 1.38295 * 119.09120 * 180.02562 * 7 6 5 9 9 C 1.38877 * 118.51090 * 0.02562 * 8 7 6 10 10 C 1.38020 * 119.32902 * 359.97438 * 9 8 7 11 11 N 1.31978 * 120.85834 * 359.72894 * 10 9 8 12 12 C 1.47440 * 108.57115 * 24.09488 * 5 4 2 13 13 C 1.54317 * 107.23062 * 359.00541 * 12 5 4 14 14 H 1.09002 * 110.70355 * 96.27954 * 13 12 5 15 15 C 1.50695 * 110.70798 * 219.33356 * 13 12 5 16 16 O 1.21284 * 119.99900 * 118.54706 * 15 13 12 17 17 N 1.34778 * 120.00502 * 298.55075 * 15 13 12 18 18 C 1.46495 * 120.00266 * 179.97438 * 17 15 13 19 19 C 1.53499 * 114.20521 * 205.00169 * 18 17 15 20 20 N 1.47066 * 87.98642 * 220.34517 * 19 18 17 21 21 C 1.36935 * 136.05905 * 207.08539 * 20 19 18 22 22 H 1.07996 * 120.00461 * 6.76058 * 21 20 19 23 23 C 1.38816 * 119.99877 * 186.76278 * 21 20 19 24 24 N 1.31618 * 119.99884 * 172.25761 * 23 21 20 25 25 Si 1.86798 * 120.00153 * 352.25282 * 23 21 20 26 26 H 1.48497 * 109.47359 * 175.36223 * 25 23 21 27 27 H 1.48503 * 109.47030 * 295.36478 * 25 23 21 28 28 H 1.48505 * 109.46945 * 55.36328 * 25 23 21 29 29 C 1.47070 * 87.88468 * 27.34150 * 20 19 18 30 30 H 1.08997 * 109.47254 * 296.13497 * 1 2 3 31 31 H 1.09005 * 109.47225 * 56.13295 * 1 2 3 32 32 H 1.08997 * 109.47128 * 176.13183 * 1 2 3 33 33 H 1.08994 * 110.37827 * 86.00641 * 4 2 1 34 34 H 1.08998 * 110.37001 * 323.66426 * 4 2 1 35 35 H 1.07999 * 120.45220 * 0.02562 * 7 6 5 36 36 H 1.08005 * 120.74356 * 180.02562 * 8 7 6 37 37 H 1.07997 * 120.33789 * 180.02562 * 9 8 7 38 38 H 1.08006 * 119.57700 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.88910 * 239.60617 * 12 5 4 40 40 H 1.08996 * 109.89447 * 118.41448 * 12 5 4 41 41 H 0.97000 * 119.99678 * 0.02562 * 17 15 13 42 42 H 1.08993 * 113.41684 * 338.20104 * 18 17 15 43 43 H 1.09001 * 113.46838 * 105.56410 * 19 18 17 44 44 H 1.09000 * 113.46983 * 335.12472 * 19 18 17 45 45 H 0.97004 * 120.00412 * 4.87236 * 24 23 21 46 46 H 1.09004 * 113.46535 * 87.44030 * 29 20 19 47 47 H 1.08996 * 113.46991 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9189 1.0183 0.0000 4 6 2.0849 -0.8059 -1.2009 5 7 3.4313 -1.2419 -0.7731 6 6 3.7434 -2.4881 -1.3042 7 6 4.9789 -3.0654 -1.0280 8 6 5.2765 -4.3053 -1.5633 9 6 4.3253 -4.9288 -2.3605 10 6 3.1199 -4.2982 -2.5931 11 7 2.8606 -3.1171 -2.0643 12 6 3.4692 -1.2711 0.7005 13 6 2.0858 -0.8071 1.2027 14 1 1.4485 -1.6636 1.4229 15 6 2.2277 0.0749 2.4163 16 8 1.8369 1.2225 2.3810 17 7 2.7890 -0.4115 3.5410 18 6 2.9275 0.4461 4.7206 19 6 4.0602 0.0321 5.6702 20 7 3.1622 0.3420 6.7929 21 6 3.3123 0.7351 8.0960 22 1 4.2913 0.9903 8.4738 23 6 2.2059 0.8056 8.9315 24 7 2.3661 1.0341 10.2177 25 14 0.4898 0.5762 8.2302 26 1 -0.5019 0.5848 9.3355 27 1 0.1888 1.6826 7.2865 28 1 0.4183 -0.7211 7.5111 29 6 2.0323 0.0375 5.9021 30 1 -0.3633 0.4527 0.9226 31 1 -0.3634 0.5727 -0.8533 32 1 -0.3633 -1.0253 -0.0693 33 1 2.1544 -0.1712 -2.0843 34 1 1.4523 -1.6703 -1.4025 35 1 5.6957 -2.5522 -0.4041 36 1 6.2272 -4.7782 -1.3659 37 1 4.5266 -5.8975 -2.7932 38 1 2.3771 -4.7796 -3.2121 39 1 4.2420 -0.5944 1.0651 40 1 3.6682 -2.2854 1.0464 41 1 3.1019 -1.3292 3.5691 42 1 2.9067 1.5105 4.4871 43 1 4.9311 0.6855 5.6178 44 1 4.3203 -1.0241 5.6012 45 1 3.2497 1.2234 10.5704 46 1 1.7578 -1.0173 5.8942 47 1 1.1755 0.6955 6.0473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030326175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:03 Heat of formation + Delta-G solvation = 82.556362 kcal Electronic energy + Delta-G solvation = -28032.680943 eV Core-core repulsion = 24217.981835 eV Total energy + Delta-G solvation = -3814.699108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30987 -40.07433 -38.77510 -37.64769 -33.96049 -33.80616 -32.86397 -32.22081 -30.61941 -29.74583 -27.66569 -26.41289 -25.43274 -24.38728 -23.60635 -22.76299 -21.66384 -20.78947 -20.17241 -19.63697 -17.82252 -17.56989 -17.43974 -16.77161 -16.29632 -16.09073 -15.70730 -15.29451 -15.04989 -14.62763 -14.47358 -14.01805 -13.90307 -13.69781 -13.46806 -13.17957 -13.12077 -12.96641 -12.75994 -12.31624 -12.28904 -12.19660 -12.04106 -11.66549 -11.46403 -11.31006 -11.00508 -10.91865 -10.60051 -10.40772 -10.36885 -10.11230 -9.78958 -9.74282 -9.58742 -9.24394 -8.90945 -8.60613 -8.49022 -7.22233 -6.37038 -3.29004 0.75388 0.91671 2.62609 3.08450 3.22906 3.40769 3.44713 3.50057 3.64008 3.94316 4.19320 4.27709 4.49023 4.53261 4.56252 4.73199 4.74978 4.77432 4.85580 4.91330 4.98962 5.02743 5.10337 5.22232 5.34650 5.37591 5.39470 5.45660 5.51528 5.60948 5.65462 5.70541 5.79931 5.83852 5.85938 6.05327 6.08742 6.10160 6.16848 6.22002 6.25608 6.27644 6.37238 6.81154 6.91909 7.01796 7.59819 7.62335 8.18833 8.28665 8.92351 9.44225 10.28279 11.15691 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.002587 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.308218 B =10821.787061 C =11623.613410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.099 0.901 4 C 0.046 3.954 5 N -0.469 5.469 6 C 0.307 3.693 7 C -0.183 4.183 8 C -0.055 4.055 9 C -0.203 4.203 10 C 0.124 3.876 11 N -0.519 5.519 12 C 0.061 3.939 13 C -0.130 4.130 14 H 0.106 0.894 15 C 0.524 3.476 16 O -0.532 6.532 17 N -0.714 5.714 18 C 0.100 3.900 19 C 0.117 3.883 20 N -0.622 5.622 21 C -0.307 4.307 22 H 0.085 0.915 23 C -0.022 4.022 24 N -0.931 5.931 25 Si 1.071 2.929 26 H -0.294 1.294 27 H -0.291 1.291 28 H -0.288 1.288 29 C 0.087 3.913 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.398 0.602 42 H 0.122 0.878 43 H 0.052 0.948 44 H 0.040 0.960 45 H 0.261 0.739 46 H 0.046 0.954 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -12.370 -28.628 31.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.186 5.186 6 C 0.075 3.925 7 C -0.205 4.205 8 C -0.081 4.081 9 C -0.224 4.224 10 C -0.034 4.034 11 N -0.233 5.233 12 C -0.066 4.066 13 C -0.152 4.152 14 H 0.124 0.876 15 C 0.309 3.691 16 O -0.408 6.408 17 N -0.365 5.365 18 C -0.005 4.005 19 C -0.011 4.011 20 N -0.350 5.350 21 C -0.433 4.433 22 H 0.103 0.897 23 C -0.221 4.221 24 N -0.573 5.573 25 Si 0.903 3.097 26 H -0.221 1.221 27 H -0.219 1.219 28 H -0.215 1.215 29 C -0.040 4.040 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.172 0.828 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.140 0.860 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.418 -10.730 -28.245 30.218 hybrid contribution 2.264 -1.419 0.021 2.672 sum 2.682 -12.149 -28.225 30.845 Atomic orbital electron populations 1.21679 0.93479 1.01719 1.02815 1.22210 0.96645 1.00053 0.91066 0.88320 1.23228 0.86900 0.99820 0.98038 1.60773 1.29686 1.19710 1.08438 1.20012 0.90589 0.88326 0.93549 1.21620 0.97251 0.97091 1.04540 1.21487 0.99116 0.93826 0.93659 1.22017 0.95825 1.02177 1.02331 1.22548 0.95577 0.89966 0.95280 1.67533 1.32910 1.10114 1.12752 1.22889 0.96984 1.02185 0.84497 1.22692 0.98139 0.99658 0.94733 0.87637 1.20173 0.77378 0.87883 0.83637 1.90714 1.48248 1.18322 1.83475 1.46050 1.61695 1.15925 1.12818 1.23517 0.98809 0.96269 0.81933 1.22637 0.94115 0.98005 0.86339 1.45694 1.01576 1.78775 1.08947 1.20102 0.96774 1.43590 0.82804 0.89740 1.25757 1.02872 0.99452 0.94054 1.70928 1.25801 1.49933 1.10591 0.83689 0.75808 0.76330 0.73852 1.22145 1.21942 1.21476 1.23236 0.93699 0.98643 0.88412 0.91534 0.92080 0.92762 0.89615 0.89518 0.84501 0.84657 0.84893 0.82761 0.88718 0.90987 0.76796 0.85980 0.93021 0.94298 0.92837 0.93613 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.31 37.15 0.35 -0.98 16 2 C -0.08 -0.82 2.68 -88.49 -0.24 -1.06 16 3 H 0.10 1.19 7.49 -51.93 -0.39 0.80 16 4 C 0.05 0.45 5.84 -2.30 -0.01 0.43 16 5 N -0.47 -4.64 5.20 -170.00 -0.88 -5.53 16 6 C 0.31 3.00 6.15 -155.02 -0.95 2.04 16 7 C -0.18 -1.48 9.05 -39.22 -0.35 -1.83 16 8 C -0.05 -0.36 10.16 -39.32 -0.40 -0.76 16 9 C -0.20 -1.26 10.10 -39.42 -0.40 -1.66 16 10 C 0.12 0.92 11.17 -17.57 -0.20 0.73 16 11 N -0.52 -5.09 8.17 -12.43 -0.10 -5.19 16 12 C 0.06 0.54 5.97 -2.84 -0.02 0.52 16 13 C -0.13 -1.31 2.80 -89.95 -0.25 -1.56 16 14 H 0.11 0.95 8.04 -51.93 -0.42 0.53 16 15 C 0.52 7.09 7.02 -10.99 -0.08 7.01 16 16 O -0.53 -9.30 15.36 5.55 0.09 -9.21 16 17 N -0.71 -9.42 5.33 -53.49 -0.28 -9.70 16 18 C 0.10 1.75 4.62 -67.68 -0.31 1.44 16 19 C 0.12 2.18 8.44 -8.50 -0.07 2.11 16 20 N -0.62 -15.19 3.70 -184.60 -0.68 -15.87 16 21 C -0.31 -8.85 11.08 -15.06 -0.17 -9.01 16 22 H 0.08 2.55 8.05 -52.49 -0.42 2.12 16 23 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 24 N -0.93 -29.45 13.70 55.49 0.76 -28.69 16 25 Si 1.07 27.23 25.13 -169.99 -4.27 22.96 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.29 -7.17 6.65 56.52 0.38 -6.79 16 28 H -0.29 -6.79 6.13 56.52 0.35 -6.44 16 29 C 0.09 1.84 5.53 -8.37 -0.05 1.80 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.86 6.40 -51.93 -0.33 0.53 16 35 H 0.14 0.95 7.99 -52.49 -0.42 0.53 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 38 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.09 0.87 7.81 -51.93 -0.41 0.46 16 40 H 0.07 0.55 7.16 -51.93 -0.37 0.18 16 41 H 0.40 4.07 8.74 -40.82 -0.36 3.71 16 42 H 0.12 2.33 7.45 -51.93 -0.39 1.94 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.66 8.13 -51.93 -0.42 0.23 16 45 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 46 H 0.05 0.93 7.73 -51.93 -0.40 0.53 16 47 H 0.05 1.24 4.65 -51.93 -0.24 1.00 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -35.11 375.10 -10.15 -45.26 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.18 Total: 1.85 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.25 Total: -1.54 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.19 Total: -64.98 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 27.23 SS G_CDS: -4.27 Total: 22.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.11 -10.15 -45.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030326175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.817 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds