Wall clock time and date at job start Tue Mar 31 2020 17:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.90454 * 2 1 4 4 C 1.54906 * 110.99243 * 236.13632 * 2 1 3 5 5 N 1.47849 * 104.79322 * 204.83907 * 4 2 1 6 6 C 1.39007 * 110.99483 * 146.36160 * 5 4 2 7 7 C 1.39148 * 119.70019 * 179.28087 * 6 5 4 8 8 C 1.38295 * 119.09120 * 180.02562 * 7 6 5 9 9 C 1.38877 * 118.51090 * 0.02562 * 8 7 6 10 10 C 1.38020 * 119.32902 * 359.97438 * 9 8 7 11 11 N 1.31978 * 120.85834 * 359.72894 * 10 9 8 12 12 C 1.47440 * 108.57115 * 24.09488 * 5 4 2 13 13 C 1.54317 * 107.23062 * 359.00541 * 12 5 4 14 14 H 1.09002 * 110.70355 * 96.27954 * 13 12 5 15 15 C 1.50695 * 110.70798 * 219.33356 * 13 12 5 16 16 O 1.21284 * 119.99900 * 118.54706 * 15 13 12 17 17 N 1.34778 * 120.00502 * 298.55075 * 15 13 12 18 18 C 1.46495 * 120.00266 * 179.97438 * 17 15 13 19 19 C 1.53499 * 114.20521 * 205.00169 * 18 17 15 20 20 N 1.47066 * 87.98642 * 220.34517 * 19 18 17 21 21 C 1.36935 * 136.05905 * 207.08539 * 20 19 18 22 22 H 1.07996 * 120.00461 * 6.76058 * 21 20 19 23 23 C 1.38816 * 119.99877 * 186.76278 * 21 20 19 24 24 N 1.31618 * 119.99884 * 172.25761 * 23 21 20 25 25 Si 1.86798 * 120.00153 * 352.25282 * 23 21 20 26 26 H 1.48497 * 109.47359 * 175.36223 * 25 23 21 27 27 H 1.48503 * 109.47030 * 295.36478 * 25 23 21 28 28 H 1.48505 * 109.46945 * 55.36328 * 25 23 21 29 29 C 1.47070 * 87.88468 * 27.34150 * 20 19 18 30 30 H 1.08997 * 109.47254 * 296.13497 * 1 2 3 31 31 H 1.09005 * 109.47225 * 56.13295 * 1 2 3 32 32 H 1.08997 * 109.47128 * 176.13183 * 1 2 3 33 33 H 1.08994 * 110.37827 * 86.00641 * 4 2 1 34 34 H 1.08998 * 110.37001 * 323.66426 * 4 2 1 35 35 H 1.07999 * 120.45220 * 0.02562 * 7 6 5 36 36 H 1.08005 * 120.74356 * 180.02562 * 8 7 6 37 37 H 1.07997 * 120.33789 * 180.02562 * 9 8 7 38 38 H 1.08006 * 119.57700 * 180.02562 * 10 9 8 39 39 H 1.08998 * 109.88910 * 239.60617 * 12 5 4 40 40 H 1.08996 * 109.89447 * 118.41448 * 12 5 4 41 41 H 0.97000 * 119.99678 * 0.02562 * 17 15 13 42 42 H 1.08993 * 113.41684 * 338.20104 * 18 17 15 43 43 H 1.09001 * 113.46838 * 105.56410 * 19 18 17 44 44 H 1.09000 * 113.46983 * 335.12472 * 19 18 17 45 45 H 0.97004 * 120.00412 * 4.87236 * 24 23 21 46 46 H 1.09004 * 113.46535 * 87.44030 * 29 20 19 47 47 H 1.08996 * 113.46991 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9189 1.0183 0.0000 4 6 2.0849 -0.8059 -1.2009 5 7 3.4313 -1.2419 -0.7731 6 6 3.7434 -2.4881 -1.3042 7 6 4.9789 -3.0654 -1.0280 8 6 5.2765 -4.3053 -1.5633 9 6 4.3253 -4.9288 -2.3605 10 6 3.1199 -4.2982 -2.5931 11 7 2.8606 -3.1171 -2.0643 12 6 3.4692 -1.2711 0.7005 13 6 2.0858 -0.8071 1.2027 14 1 1.4485 -1.6636 1.4229 15 6 2.2277 0.0749 2.4163 16 8 1.8369 1.2225 2.3810 17 7 2.7890 -0.4115 3.5410 18 6 2.9275 0.4461 4.7206 19 6 4.0602 0.0321 5.6702 20 7 3.1622 0.3420 6.7929 21 6 3.3123 0.7351 8.0960 22 1 4.2913 0.9903 8.4738 23 6 2.2059 0.8056 8.9315 24 7 2.3661 1.0341 10.2177 25 14 0.4898 0.5762 8.2302 26 1 -0.5019 0.5848 9.3355 27 1 0.1888 1.6826 7.2865 28 1 0.4183 -0.7211 7.5111 29 6 2.0323 0.0375 5.9021 30 1 -0.3633 0.4527 0.9226 31 1 -0.3634 0.5727 -0.8533 32 1 -0.3633 -1.0253 -0.0693 33 1 2.1544 -0.1712 -2.0843 34 1 1.4523 -1.6703 -1.4025 35 1 5.6957 -2.5522 -0.4041 36 1 6.2272 -4.7782 -1.3659 37 1 4.5266 -5.8975 -2.7932 38 1 2.3771 -4.7796 -3.2121 39 1 4.2420 -0.5944 1.0651 40 1 3.6682 -2.2854 1.0464 41 1 3.1019 -1.3292 3.5691 42 1 2.9067 1.5105 4.4871 43 1 4.9311 0.6855 5.6178 44 1 4.3203 -1.0241 5.6012 45 1 3.2497 1.2234 10.5704 46 1 1.7578 -1.0173 5.8942 47 1 1.1755 0.6955 6.0473 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030326175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:02 Heat of formation + Delta-G solvation = 57.202427 kcal Electronic energy + Delta-G solvation = -28033.780372 eV Core-core repulsion = 24217.981835 eV Total energy + Delta-G solvation = -3815.798537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04214 -41.12805 -39.99607 -38.72101 -35.35465 -34.62742 -34.20569 -33.39368 -31.43363 -30.50973 -29.40650 -27.13917 -27.06634 -25.37079 -24.26393 -24.07199 -22.52188 -21.73616 -21.60625 -20.80942 -19.58647 -18.52442 -18.39062 -17.59870 -17.41722 -17.20746 -16.59854 -16.47955 -16.18326 -15.72950 -15.28782 -15.20811 -15.15989 -14.94809 -14.43508 -14.12031 -14.01787 -13.91845 -13.69709 -13.56816 -13.40083 -13.35747 -13.24517 -13.01564 -12.72771 -12.45573 -12.22344 -12.09232 -11.80487 -11.70515 -11.49089 -11.30515 -11.07283 -10.98323 -10.82940 -10.65827 -10.32142 -9.99021 -9.25804 -9.10473 -8.69132 -5.51998 0.21830 0.40967 1.36048 1.44935 1.53398 1.64349 2.02430 2.48721 2.51667 2.93214 2.94720 3.20195 3.22043 3.42608 3.54354 3.67536 3.72915 4.07474 4.08820 4.13745 4.20047 4.23766 4.28523 4.30149 4.31325 4.41405 4.50273 4.52795 4.59068 4.63971 4.72823 4.74352 4.81218 4.87623 4.92920 4.99589 5.06437 5.10397 5.13892 5.27063 5.35421 5.36058 5.54010 5.57625 5.65049 5.90965 6.19277 6.52854 6.65531 7.06878 7.21498 7.27608 8.20112 8.86480 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.002587 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.308218 B =10821.787061 C =11623.613410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.076 0.924 4 C 0.056 3.944 5 N -0.479 5.479 6 C 0.284 3.716 7 C -0.191 4.191 8 C -0.057 4.057 9 C -0.197 4.197 10 C 0.109 3.891 11 N -0.542 5.542 12 C 0.066 3.934 13 C -0.119 4.119 14 H 0.125 0.875 15 C 0.527 3.473 16 O -0.572 6.572 17 N -0.699 5.699 18 C 0.128 3.872 19 C 0.122 3.878 20 N -0.657 5.657 21 C -0.290 4.290 22 H 0.057 0.943 23 C -0.083 4.083 24 N -0.968 5.968 25 Si 1.108 2.892 26 H -0.303 1.303 27 H -0.284 1.284 28 H -0.256 1.256 29 C 0.079 3.921 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.418 0.582 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.248 0.752 46 H 0.066 0.934 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -15.259 -31.555 35.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.070 4.070 5 N -0.197 5.197 6 C 0.053 3.947 7 C -0.214 4.214 8 C -0.083 4.083 9 C -0.217 4.217 10 C -0.048 4.048 11 N -0.257 5.257 12 C -0.060 4.060 13 C -0.141 4.141 14 H 0.143 0.857 15 C 0.314 3.686 16 O -0.451 6.451 17 N -0.351 5.351 18 C 0.021 3.979 19 C -0.004 4.004 20 N -0.386 5.386 21 C -0.417 4.417 22 H 0.075 0.925 23 C -0.275 4.275 24 N -0.613 5.613 25 Si 0.935 3.065 26 H -0.231 1.231 27 H -0.212 1.212 28 H -0.181 1.181 29 C -0.047 4.047 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.162 0.838 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.192 0.808 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.255 0.745 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.658 -13.679 -31.250 34.119 hybrid contribution 2.335 -0.560 0.776 2.524 sum 2.994 -14.238 -30.473 33.769 Atomic orbital electron populations 1.21640 0.92961 1.02525 1.02149 1.22141 0.97059 0.99011 0.91640 0.90542 1.23081 0.87079 0.99421 0.97413 1.60806 1.29569 1.20519 1.08779 1.20151 0.91443 0.88564 0.94560 1.21797 0.96831 0.97814 1.04946 1.21857 1.00188 0.93258 0.92971 1.22363 0.95024 1.02972 1.01362 1.23005 0.96811 0.89530 0.95451 1.67491 1.33625 1.11195 1.13340 1.22872 0.95805 1.03041 0.84301 1.22647 0.99457 0.99287 0.92714 0.85729 1.20720 0.76026 0.87609 0.84209 1.90711 1.49839 1.20386 1.84149 1.45774 1.61597 1.16368 1.11385 1.22777 0.96688 0.95928 0.82521 1.22831 0.93893 0.99824 0.83891 1.45736 1.04945 1.79439 1.08490 1.19977 0.95381 1.41405 0.84982 0.92526 1.26975 1.06470 1.00095 0.93937 1.71020 1.24985 1.53203 1.12124 0.83234 0.71847 0.78013 0.73397 1.23072 1.21174 1.18118 1.23458 0.92904 0.99297 0.89039 0.93460 0.91278 0.91379 0.90082 0.89554 0.83808 0.82149 0.82212 0.80786 0.89046 0.89181 0.74493 0.87721 0.92631 0.90892 0.94254 0.91602 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.31 71.98 0.67 -1.74 16 2 C -0.08 -1.53 2.68 -9.41 -0.03 -1.55 16 3 H 0.08 1.84 7.49 -2.39 -0.02 1.82 16 4 C 0.06 1.02 5.84 86.77 0.51 1.52 16 5 N -0.48 -8.71 5.20 -691.74 -3.60 -12.30 16 6 C 0.28 4.98 6.15 133.07 0.82 5.80 16 7 C -0.19 -2.62 9.05 22.50 0.20 -2.41 16 8 C -0.06 -0.55 10.16 22.44 0.23 -0.33 16 9 C -0.20 -1.78 10.10 22.37 0.23 -1.55 16 10 C 0.11 1.34 11.17 84.62 0.95 2.29 16 11 N -0.54 -9.56 8.17 -193.25 -1.58 -11.14 16 12 C 0.07 1.02 5.97 86.65 0.52 1.53 16 13 C -0.12 -2.13 2.80 -10.36 -0.03 -2.16 16 14 H 0.12 1.82 8.04 -2.39 -0.02 1.80 16 15 C 0.53 13.25 7.02 87.66 0.62 13.86 16 16 O -0.57 -19.64 15.36 -3.04 -0.05 -19.69 16 17 N -0.70 -16.35 5.33 -441.53 -2.35 -18.71 16 18 C 0.13 4.19 4.62 45.55 0.21 4.40 16 19 C 0.12 4.24 8.44 83.18 0.70 4.94 16 20 N -0.66 -31.34 3.70 -737.96 -2.73 -34.07 16 21 C -0.29 -16.92 11.08 84.03 0.93 -15.99 16 22 H 0.06 3.53 8.05 -2.91 -0.02 3.51 16 23 C -0.08 -5.00 5.50 84.86 0.47 -4.54 16 24 N -0.97 -63.12 13.70 21.65 0.30 -62.82 16 25 Si 1.11 55.03 25.13 68.60 1.72 56.75 16 26 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 27 H -0.28 -13.60 6.65 99.48 0.66 -12.94 16 28 H -0.26 -11.24 6.13 99.48 0.61 -10.63 16 29 C 0.08 3.17 5.53 83.27 0.46 3.63 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.58 6.40 -2.39 -0.02 1.56 16 35 H 0.14 1.65 7.99 -2.91 -0.02 1.62 16 36 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 37 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 40 H 0.09 1.07 7.16 -2.39 -0.02 1.05 16 41 H 0.42 6.76 8.74 -92.71 -0.81 5.95 16 42 H 0.10 3.90 7.45 -2.39 -0.02 3.88 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 2.13 8.13 -2.39 -0.02 2.11 16 45 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 46 H 0.07 2.41 7.73 -2.38 -0.02 2.40 16 47 H 0.04 1.68 4.65 -2.39 -0.01 1.66 16 Total: -1.00 -78.61 375.10 -0.84 -79.45 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -0.01 Total: 14.82 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 7.45 Total: 7.70 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -9.96 Total: -139.04 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 1.72 Total: 56.75 kcal Total: -78.61 -0.84 -79.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030326175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.655 kcal (2) G-P(sol) polarization free energy of solvation -78.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds