Wall clock time and date at job start Tue Mar 31 2020 16:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46264 * 2 1 4 4 C 1.53133 * 109.45378 * 240.02059 * 2 1 3 5 5 C 1.53388 * 109.24972 * 170.18517 * 4 2 1 6 6 C 1.51103 * 108.19492 * 48.94467 * 5 4 2 7 7 N 1.29796 * 127.17143 * 164.30677 * 6 5 4 8 8 C 1.35894 * 108.84442 * 180.25786 * 7 6 5 9 9 C 1.47322 * 126.20984 * 179.85911 * 8 7 6 10 10 O 1.21625 * 120.00241 * 179.68740 * 9 8 7 11 11 N 1.34778 * 120.00068 * 359.68867 * 9 8 7 12 12 C 1.47870 * 126.94074 * 359.97438 * 11 9 8 13 13 C 1.56030 * 105.10047 * 182.02224 * 12 11 9 14 14 H 1.08994 * 116.24497 * 158.83831 * 13 12 11 15 15 C 1.57077 * 99.60491 * 32.80458 * 13 12 11 16 16 C 1.49288 * 126.94612 * 179.97438 * 11 9 8 17 17 H 1.08997 * 116.15204 * 16.68578 * 16 11 9 18 18 C 1.56017 * 104.09471 * 246.67750 * 16 11 9 19 19 N 1.47863 * 105.10619 * 288.76771 * 18 16 11 20 20 C 1.36938 * 126.94490 * 181.96608 * 19 18 16 21 21 H 1.07996 * 120.00063 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99875 * 0.04407 * 20 19 18 23 23 N 1.31618 * 119.99862 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99849 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47306 * 59.99457 * 24 22 20 26 26 H 1.48498 * 109.47020 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46608 * 299.99813 * 24 22 20 28 28 C 1.36575 * 107.57698 * 359.59631 * 8 7 6 29 29 N 1.34860 * 106.78964 * 0.19035 * 28 8 7 30 30 C 1.46584 * 127.50486 * 180.13302 * 29 28 8 31 31 H 1.08998 * 109.47260 * 300.02707 * 1 2 3 32 32 H 1.09007 * 109.47019 * 60.02236 * 1 2 3 33 33 H 1.09002 * 109.47568 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.51108 * 290.12048 * 4 2 1 35 35 H 1.09010 * 109.50773 * 50.25306 * 4 2 1 36 36 H 1.08998 * 109.72090 * 168.62603 * 5 4 2 37 37 H 1.09005 * 109.71771 * 289.23091 * 5 4 2 38 38 H 1.08995 * 110.31895 * 300.92487 * 12 11 9 39 39 H 1.09000 * 110.31837 * 63.11865 * 12 11 9 40 40 H 1.09004 * 112.36418 * 191.71750 * 15 13 12 41 41 H 1.08997 * 112.37489 * 64.27571 * 15 13 12 42 42 H 1.09001 * 110.31161 * 47.67981 * 18 16 11 43 43 H 1.09000 * 110.31203 * 169.85793 * 18 16 11 44 44 H 0.96997 * 119.99551 * 179.97438 * 23 22 20 45 45 H 1.08007 * 126.60371 * 180.21430 * 28 8 7 46 46 H 1.08997 * 109.57963 * 282.58813 * 30 29 28 47 47 H 1.09001 * 109.57799 * 42.86168 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7215 -1.2507 5 6 3.5539 -0.5085 -1.3754 6 6 4.1859 -0.8199 -0.0387 7 7 5.4427 -1.0356 0.2033 8 6 5.5978 -1.2848 1.5301 9 6 6.8666 -1.5816 2.2175 10 8 6.8759 -1.7825 3.4170 11 7 8.0170 -1.6305 1.5171 12 6 8.1827 -1.4131 0.0639 13 6 9.7018 -1.6400 -0.2106 14 1 9.9756 -1.8780 -1.2384 15 6 10.0012 -2.7419 0.8681 16 6 9.3816 -1.9151 2.0516 17 1 9.4246 -2.3729 3.0398 18 6 10.1517 -0.5716 1.8621 19 7 10.3634 -0.4512 0.4036 20 6 11.0309 0.5491 -0.2514 21 1 11.1185 0.5252 -1.3275 22 6 11.5953 1.5936 0.4680 23 7 11.4884 1.6227 1.7795 24 14 12.5052 2.9586 -0.4256 25 1 11.5806 3.6329 -1.3719 26 1 13.0104 3.9457 0.5620 27 1 13.6486 2.3815 -1.1773 28 6 4.3647 -1.2043 2.1117 29 7 3.4886 -0.9131 1.1287 30 6 2.0405 -0.7219 1.2516 31 1 -0.3634 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8902 33 1 -0.3634 -1.0277 0.0005 34 1 1.8280 -1.7875 -1.1680 35 1 1.5418 -0.3180 -2.1323 36 1 3.9576 -1.1752 -2.1374 37 1 3.7584 0.5271 -1.6473 38 1 7.5854 -2.1319 -0.4969 39 1 7.8982 -0.3948 -0.2013 40 1 11.0694 -2.9155 0.9982 41 1 9.4568 -3.6670 0.6784 42 1 9.5530 0.2626 2.2278 43 1 11.1091 -0.6077 2.3818 44 1 11.8831 2.3524 2.2821 45 1 4.1354 -1.3461 3.1576 46 1 1.5502 -1.6914 1.3399 47 1 1.8250 -0.1217 2.1356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032475954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:32 Heat of formation + Delta-G solvation = 79.703434 kcal Electronic energy + Delta-G solvation = -28921.827082 eV Core-core repulsion = 25107.004262 eV Total energy + Delta-G solvation = -3814.822820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.37972 -39.72444 -37.84028 -37.10064 -33.67505 -33.32304 -31.92595 -31.14678 -29.03399 -28.64047 -28.34156 -26.77387 -25.03702 -24.31806 -23.61638 -22.27881 -21.72796 -20.04972 -19.61720 -19.23553 -18.36339 -17.43091 -16.57983 -16.22897 -15.84061 -15.51829 -15.07179 -14.83541 -14.68253 -14.28508 -14.01968 -13.92730 -13.72943 -13.50786 -13.08465 -13.00540 -12.77740 -12.57100 -11.98933 -11.87875 -11.71892 -11.52576 -11.44388 -11.29122 -11.19694 -11.14748 -10.87606 -10.73750 -10.61561 -10.43712 -10.18698 -10.01711 -9.87916 -9.66550 -9.51348 -9.43841 -8.58170 -8.38174 -7.71545 -6.77612 -5.64692 -2.98005 1.78285 2.54368 2.59932 3.44918 3.48689 3.50571 3.63742 3.93792 4.00131 4.10098 4.20794 4.26937 4.52856 4.72507 4.80217 4.90214 4.97816 5.00512 5.05371 5.09918 5.23451 5.35452 5.40337 5.43820 5.50968 5.51062 5.54141 5.60745 5.71588 5.75607 5.79915 5.82825 5.92362 6.12662 6.32745 6.41816 6.48232 6.58861 6.62091 6.78611 6.79619 6.96890 7.09667 7.55164 7.63674 7.83823 7.97074 8.22690 8.33334 8.83061 9.22665 9.83577 10.54487 11.47574 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003240 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.953565 B = 8639.618647 C = 9485.408324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.032 4.032 6 C 0.201 3.799 7 N -0.444 5.444 8 C -0.046 4.046 9 C 0.612 3.388 10 O -0.565 6.565 11 N -0.591 5.591 12 C 0.106 3.894 13 C 0.135 3.865 14 H 0.104 0.896 15 C -0.152 4.152 16 C 0.097 3.903 17 H 0.113 0.887 18 C 0.177 3.823 19 N -0.597 5.597 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.026 3.974 29 N -0.457 5.457 30 C 0.107 3.893 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.253 0.747 45 H 0.185 0.815 46 H 0.086 0.914 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.851 -6.918 -5.144 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.071 4.071 6 C -0.062 4.062 7 N -0.163 5.163 8 C -0.175 4.175 9 C 0.400 3.600 10 O -0.446 6.446 11 N -0.322 5.322 12 C -0.019 4.019 13 C 0.026 3.974 14 H 0.122 0.878 15 C -0.192 4.192 16 C -0.005 4.005 17 H 0.131 0.869 18 C 0.052 3.948 19 N -0.322 5.322 20 C -0.354 4.354 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.112 4.112 29 N -0.139 5.139 30 C -0.015 4.015 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.104 0.896 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.242 -6.731 -4.959 23.762 hybrid contribution -0.247 0.922 0.343 1.014 sum -22.489 -5.809 -4.616 23.681 Atomic orbital electron populations 1.21765 0.93193 1.02503 1.02718 1.21483 0.96917 1.00535 0.93695 0.89693 1.21765 0.94869 1.01253 0.97898 1.20205 0.93458 1.03597 0.89851 1.23559 0.87280 1.05988 0.89400 1.70576 1.14782 1.16358 1.14568 1.20673 0.93746 1.12632 0.90432 1.16470 0.81209 0.77128 0.85199 1.90737 1.86436 1.53580 1.13809 1.48947 1.06091 1.66894 1.10232 1.23166 0.98128 1.01327 0.79258 1.23266 0.90041 0.87948 0.96112 0.87839 1.24159 1.00706 0.96955 0.97346 1.24372 0.80085 0.98836 0.97207 0.86942 1.21876 0.97085 0.90802 0.85027 1.45198 1.62779 1.22369 1.01830 1.19008 1.26491 0.98964 0.90932 0.90279 1.24804 1.01200 0.98810 0.95678 1.69914 1.49294 1.33070 1.04541 0.86203 0.79563 0.81754 0.78238 1.21257 1.21732 1.21202 1.22343 0.89007 1.04862 0.95021 1.45276 1.08285 1.52335 1.08054 1.22110 0.77142 1.02014 1.00197 0.92101 0.91528 0.92129 0.91110 0.89854 0.88460 0.89107 0.92476 0.90791 0.89924 0.91756 0.93589 0.92701 0.93687 0.79749 0.89612 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.53 9.17 37.16 0.34 -0.19 16 2 C -0.11 -0.61 2.73 -90.43 -0.25 -0.86 16 3 H 0.08 0.56 8.11 -51.93 -0.42 0.13 16 4 C -0.12 -0.70 5.25 -26.46 -0.14 -0.84 16 5 C -0.03 -0.29 6.33 -27.48 -0.17 -0.46 16 6 C 0.20 2.69 7.64 -154.63 -1.18 1.51 16 7 N -0.44 -7.70 9.01 -7.00 -0.06 -7.76 16 8 C -0.05 -0.84 6.84 -82.97 -0.57 -1.41 16 9 C 0.61 13.15 7.89 -12.57 -0.10 13.05 16 10 O -0.57 -13.16 17.23 5.26 0.09 -13.07 16 11 N -0.59 -12.63 2.95 -158.04 -0.47 -13.10 16 12 C 0.11 2.16 4.95 -1.67 -0.01 2.15 16 13 C 0.13 2.78 5.53 -62.56 -0.35 2.43 16 14 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 15 C -0.15 -2.84 6.81 -22.29 -0.15 -2.99 16 16 C 0.10 2.08 5.24 -62.54 -0.33 1.75 16 17 H 0.11 2.29 8.06 -51.93 -0.42 1.88 16 18 C 0.18 4.55 4.76 -1.68 -0.01 4.55 16 19 N -0.60 -15.36 3.02 -156.36 -0.47 -15.83 16 20 C -0.23 -6.31 10.37 -15.06 -0.16 -6.46 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 23 N -0.92 -27.92 10.56 55.49 0.59 -27.33 16 24 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.03 0.38 11.32 -16.82 -0.19 0.19 16 29 N -0.46 -5.40 3.11 -113.42 -0.35 -5.76 16 30 C 0.11 0.76 6.25 -3.87 -0.02 0.74 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.08 0.35 8.12 -51.92 -0.42 -0.07 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 39 H 0.07 1.71 7.90 -51.93 -0.41 1.30 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.36 7.68 -51.93 -0.40 0.96 16 43 H 0.05 1.52 7.46 -51.93 -0.39 1.13 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 45 H 0.19 2.32 8.06 -52.48 -0.42 1.90 16 46 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -35.69 372.08 -10.94 -46.63 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.47 Total: 0.34 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -3.38 Total: 12.80 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -0.77 Total: -69.78 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.69 -10.94 -46.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032475954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.333 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds