Wall clock time and date at job start Tue Mar 31 2020 16:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46264 * 2 1 4 4 C 1.53133 * 109.45378 * 240.02059 * 2 1 3 5 5 C 1.53388 * 109.24972 * 170.18517 * 4 2 1 6 6 C 1.51103 * 108.19492 * 48.94467 * 5 4 2 7 7 N 1.29796 * 127.17143 * 164.30677 * 6 5 4 8 8 C 1.35894 * 108.84442 * 180.25786 * 7 6 5 9 9 C 1.47322 * 126.20984 * 179.85911 * 8 7 6 10 10 O 1.21625 * 120.00241 * 179.68740 * 9 8 7 11 11 N 1.34778 * 120.00068 * 359.68867 * 9 8 7 12 12 C 1.47870 * 126.94074 * 359.97438 * 11 9 8 13 13 C 1.56030 * 105.10047 * 182.02224 * 12 11 9 14 14 H 1.08994 * 116.24497 * 158.83831 * 13 12 11 15 15 C 1.57077 * 99.60491 * 32.80458 * 13 12 11 16 16 C 1.49288 * 126.94612 * 179.97438 * 11 9 8 17 17 H 1.08997 * 116.15204 * 16.68578 * 16 11 9 18 18 C 1.56017 * 104.09471 * 246.67750 * 16 11 9 19 19 N 1.47863 * 105.10619 * 288.76771 * 18 16 11 20 20 C 1.36938 * 126.94490 * 181.96608 * 19 18 16 21 21 H 1.07996 * 120.00063 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99875 * 0.04407 * 20 19 18 23 23 N 1.31618 * 119.99862 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99849 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47306 * 59.99457 * 24 22 20 26 26 H 1.48498 * 109.47020 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46608 * 299.99813 * 24 22 20 28 28 C 1.36575 * 107.57698 * 359.59631 * 8 7 6 29 29 N 1.34860 * 106.78964 * 0.19035 * 28 8 7 30 30 C 1.46584 * 127.50486 * 180.13302 * 29 28 8 31 31 H 1.08998 * 109.47260 * 300.02707 * 1 2 3 32 32 H 1.09007 * 109.47019 * 60.02236 * 1 2 3 33 33 H 1.09002 * 109.47568 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.51108 * 290.12048 * 4 2 1 35 35 H 1.09010 * 109.50773 * 50.25306 * 4 2 1 36 36 H 1.08998 * 109.72090 * 168.62603 * 5 4 2 37 37 H 1.09005 * 109.71771 * 289.23091 * 5 4 2 38 38 H 1.08995 * 110.31895 * 300.92487 * 12 11 9 39 39 H 1.09000 * 110.31837 * 63.11865 * 12 11 9 40 40 H 1.09004 * 112.36418 * 191.71750 * 15 13 12 41 41 H 1.08997 * 112.37489 * 64.27571 * 15 13 12 42 42 H 1.09001 * 110.31161 * 47.67981 * 18 16 11 43 43 H 1.09000 * 110.31203 * 169.85793 * 18 16 11 44 44 H 0.96997 * 119.99551 * 179.97438 * 23 22 20 45 45 H 1.08007 * 126.60371 * 180.21430 * 28 8 7 46 46 H 1.08997 * 109.57963 * 282.58813 * 30 29 28 47 47 H 1.09001 * 109.57799 * 42.86168 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7215 -1.2507 5 6 3.5539 -0.5085 -1.3754 6 6 4.1859 -0.8199 -0.0387 7 7 5.4427 -1.0356 0.2033 8 6 5.5978 -1.2848 1.5301 9 6 6.8666 -1.5816 2.2175 10 8 6.8759 -1.7825 3.4170 11 7 8.0170 -1.6305 1.5171 12 6 8.1827 -1.4131 0.0639 13 6 9.7018 -1.6400 -0.2106 14 1 9.9756 -1.8780 -1.2384 15 6 10.0012 -2.7419 0.8681 16 6 9.3816 -1.9151 2.0516 17 1 9.4246 -2.3729 3.0398 18 6 10.1517 -0.5716 1.8621 19 7 10.3634 -0.4512 0.4036 20 6 11.0309 0.5491 -0.2514 21 1 11.1185 0.5252 -1.3275 22 6 11.5953 1.5936 0.4680 23 7 11.4884 1.6227 1.7795 24 14 12.5052 2.9586 -0.4256 25 1 11.5806 3.6329 -1.3719 26 1 13.0104 3.9457 0.5620 27 1 13.6486 2.3815 -1.1773 28 6 4.3647 -1.2043 2.1117 29 7 3.4886 -0.9131 1.1287 30 6 2.0405 -0.7219 1.2516 31 1 -0.3634 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8902 33 1 -0.3634 -1.0277 0.0005 34 1 1.8280 -1.7875 -1.1680 35 1 1.5418 -0.3180 -2.1323 36 1 3.9576 -1.1752 -2.1374 37 1 3.7584 0.5271 -1.6473 38 1 7.5854 -2.1319 -0.4969 39 1 7.8982 -0.3948 -0.2013 40 1 11.0694 -2.9155 0.9982 41 1 9.4568 -3.6670 0.6784 42 1 9.5530 0.2626 2.2278 43 1 11.1091 -0.6077 2.3818 44 1 11.8831 2.3524 2.2821 45 1 4.1354 -1.3461 3.1576 46 1 1.5502 -1.6914 1.3399 47 1 1.8250 -0.1217 2.1356 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032475954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:31 Heat of formation + Delta-G solvation = 57.877389 kcal Electronic energy + Delta-G solvation = -28922.773531 eV Core-core repulsion = 25107.004262 eV Total energy + Delta-G solvation = -3815.769269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.43719 -41.43448 -39.26270 -38.03547 -35.45192 -34.45767 -33.31791 -32.40317 -30.75168 -30.22866 -29.71251 -27.50403 -26.96487 -25.53741 -24.74985 -23.79651 -22.49837 -21.54914 -21.35676 -20.03493 -20.01733 -18.97485 -18.11963 -17.47206 -17.26210 -17.00709 -16.39427 -16.16671 -15.69984 -15.58291 -15.39265 -15.01883 -14.84178 -14.67150 -14.61870 -14.08783 -13.81542 -13.56271 -13.36304 -13.31322 -13.12143 -13.05484 -12.83353 -12.66264 -12.43294 -12.30839 -12.15693 -12.08772 -12.01374 -11.89815 -11.77454 -11.67289 -11.52203 -11.26594 -11.03723 -10.68871 -10.67808 -9.69645 -9.33133 -8.88731 -7.82725 -5.18649 0.54137 1.39136 1.45591 1.49996 1.55807 1.61994 2.09465 2.49494 2.51726 3.14542 3.33693 3.38470 3.45551 3.58944 3.69065 3.72071 3.93032 3.95603 4.02380 4.06350 4.21232 4.25758 4.37195 4.38911 4.46337 4.56476 4.65141 4.71377 4.74368 4.87525 4.92357 4.94403 4.99883 5.02532 5.03255 5.11665 5.13822 5.15641 5.28292 5.31306 5.41222 5.43827 5.46153 5.57577 5.64449 6.08784 6.10824 6.65627 6.82324 7.03833 7.21713 7.71589 8.43532 9.28589 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003240 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.953565 B = 8639.618647 C = 9485.408324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.034 4.034 6 C 0.206 3.794 7 N -0.483 5.483 8 C -0.094 4.094 9 C 0.603 3.397 10 O -0.595 6.595 11 N -0.599 5.599 12 C 0.125 3.875 13 C 0.130 3.870 14 H 0.134 0.866 15 C -0.126 4.126 16 C 0.099 3.901 17 H 0.119 0.881 18 C 0.192 3.808 19 N -0.615 5.615 20 C -0.231 4.231 21 H 0.094 0.906 22 C -0.074 4.074 23 N -0.959 5.959 24 Si 0.981 3.019 25 H -0.278 1.278 26 H -0.301 1.301 27 H -0.271 1.271 28 C 0.043 3.957 29 N -0.447 5.447 30 C 0.097 3.903 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.099 0.901 42 H -0.009 1.009 43 H 0.024 0.976 44 H 0.244 0.756 45 H 0.203 0.797 46 H 0.107 0.893 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.499 -8.038 -7.526 27.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 H 0.093 0.907 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.059 4.059 7 N -0.202 5.202 8 C -0.222 4.222 9 C 0.394 3.606 10 O -0.478 6.478 11 N -0.329 5.329 12 C 0.001 3.999 13 C 0.024 3.976 14 H 0.151 0.849 15 C -0.166 4.166 16 C -0.004 4.004 17 H 0.137 0.863 18 C 0.066 3.934 19 N -0.340 5.340 20 C -0.360 4.360 21 H 0.112 0.888 22 C -0.266 4.266 23 N -0.608 5.608 24 Si 0.810 3.190 25 H -0.204 1.204 26 H -0.228 1.228 27 H -0.196 1.196 28 C -0.098 4.098 29 N -0.128 5.128 30 C -0.023 4.023 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.009 0.991 43 H 0.042 0.958 44 H 0.053 0.947 45 H 0.219 0.781 46 H 0.125 0.875 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.937 -7.884 -7.398 27.179 hybrid contribution 0.426 1.287 1.070 1.727 sum -24.511 -6.597 -6.328 26.160 Atomic orbital electron populations 1.21726 0.91193 1.03283 1.03358 1.21488 0.98354 0.99642 0.92770 0.90661 1.21775 0.92403 1.01817 0.99027 1.20452 0.95496 1.03792 0.87511 1.24353 0.86542 1.03804 0.91222 1.70457 1.17312 1.18247 1.14231 1.20431 0.93523 1.16630 0.91648 1.17024 0.82246 0.76248 0.85096 1.90687 1.87132 1.54990 1.15011 1.49036 1.06039 1.67206 1.10636 1.22897 0.98080 0.99966 0.78993 1.23660 0.89389 0.86609 0.97967 0.84863 1.24047 1.01207 0.97128 0.94177 1.24266 0.80222 0.96875 0.99004 0.86306 1.21466 0.95160 0.91538 0.85254 1.45457 1.62840 1.23673 1.02028 1.19520 1.25396 0.99303 0.91790 0.88810 1.25717 1.02901 1.01613 0.96404 1.70174 1.50835 1.33549 1.06245 0.85102 0.78586 0.78487 0.76861 1.20417 1.22773 1.19644 1.22562 0.88392 1.02777 0.96102 1.45571 1.09930 1.50487 1.06830 1.22593 0.74115 1.03794 1.01790 0.91705 0.90746 0.91253 0.90577 0.87474 0.87905 0.88850 0.90152 0.94166 0.89453 0.88286 0.99078 0.95813 0.94718 0.78059 0.87469 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.49 9.17 71.98 0.66 0.17 16 2 C -0.10 -0.84 2.73 -10.67 -0.03 -0.87 16 3 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 4 C -0.11 -0.94 5.25 30.77 0.16 -0.77 16 5 C -0.03 -0.53 6.33 30.11 0.19 -0.34 16 6 C 0.21 5.26 7.64 138.05 1.05 6.32 16 7 N -0.48 -16.82 9.01 -176.07 -1.59 -18.41 16 8 C -0.09 -3.55 6.84 40.52 0.28 -3.27 16 9 C 0.60 26.84 7.89 86.63 0.68 27.53 16 10 O -0.60 -28.80 17.23 -4.11 -0.07 -28.87 16 11 N -0.60 -26.26 2.95 -772.18 -2.28 -28.54 16 12 C 0.13 5.10 4.95 87.17 0.43 5.53 16 13 C 0.13 5.24 5.53 46.94 0.26 5.49 16 14 H 0.13 4.56 8.14 -2.39 -0.02 4.55 16 15 C -0.13 -4.53 6.81 33.47 0.23 -4.30 16 16 C 0.10 4.34 5.24 46.94 0.25 4.58 16 17 H 0.12 5.00 8.06 -2.39 -0.02 4.98 16 18 C 0.19 10.44 4.76 87.16 0.42 10.85 16 19 N -0.62 -32.36 3.02 -648.59 -1.96 -34.32 16 20 C -0.23 -13.11 10.37 84.03 0.87 -12.24 16 21 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 22 C -0.07 -4.37 5.49 84.86 0.47 -3.91 16 23 N -0.96 -61.19 10.56 21.65 0.23 -60.96 16 24 Si 0.98 47.25 29.55 68.60 2.03 49.27 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 C 0.04 1.24 11.32 83.84 0.95 2.19 16 29 N -0.45 -9.83 3.11 -512.74 -1.60 -11.43 16 30 C 0.10 1.08 6.25 86.44 0.54 1.62 16 31 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.08 0.60 8.12 -2.38 -0.02 0.58 16 35 H 0.11 0.45 8.12 -2.38 -0.02 0.43 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 2.91 7.71 -2.39 -0.02 2.89 16 39 H 0.04 1.91 7.90 -2.39 -0.02 1.89 16 40 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 42 H -0.01 -0.58 7.68 -2.39 -0.02 -0.60 16 43 H 0.02 1.41 7.46 -2.39 -0.02 1.40 16 44 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.20 4.91 8.06 -2.91 -0.02 4.88 16 46 H 0.11 0.82 8.12 -2.39 -0.02 0.80 16 47 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -83.39 372.08 3.13 -80.26 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.96 Total: 14.42 kcal Atomic # 6 Polarization: 31.18 SS G_CDS: 7.41 Total: 38.58 kcal Atomic # 7 Polarization: -146.48 SS G_CDS: -7.19 Total: -153.66 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.07 Total: -28.87 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -83.39 3.13 -80.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032475954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.133 kcal (2) G-P(sol) polarization free energy of solvation -83.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds