Wall clock time and date at job start Tue Mar 31 2020 16:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53104 * 109.46785 * 119.99079 * 2 1 3 5 5 C 1.53402 * 109.64618 * 190.07298 * 4 2 1 6 6 C 1.50710 * 108.33212 * 309.98059 * 5 4 2 7 7 N 1.34321 * 128.90610 * 196.62586 * 6 5 4 8 8 H 0.96996 * 124.97857 * 359.90336 * 7 6 5 9 9 N 1.28843 * 110.03953 * 179.86616 * 7 6 5 10 10 C 1.32208 * 110.15426 * 0.07957 * 9 7 6 11 11 C 1.47709 * 126.67913 * 179.97438 * 10 9 7 12 12 O 1.21572 * 120.00058 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99961 * 359.97026 * 11 10 9 14 14 C 1.47865 * 126.94440 * 0.02641 * 13 11 10 15 15 C 1.56026 * 105.10235 * 181.97929 * 14 13 11 16 16 H 1.09000 * 116.24861 * 158.83560 * 15 14 13 17 17 C 1.57082 * 99.60592 * 32.80704 * 15 14 13 18 18 C 1.49292 * 126.94350 * 179.71354 * 13 11 10 19 19 H 1.08997 * 116.15172 * 15.85979 * 18 13 11 20 20 C 1.58438 * 103.70050 * 246.54411 * 18 13 11 21 21 N 1.47864 * 104.83232 * 288.54782 * 20 18 13 22 22 C 1.36938 * 126.94309 * 182.30617 * 21 20 18 23 23 H 1.07999 * 119.99423 * 179.97438 * 22 21 20 24 24 C 1.38811 * 119.99964 * 359.97438 * 22 21 20 25 25 N 1.31614 * 120.00114 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99703 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47177 * 90.00485 * 26 24 22 28 28 H 1.48494 * 109.47095 * 210.00276 * 26 24 22 29 29 H 1.48497 * 109.47226 * 330.00275 * 26 24 22 30 30 C 1.35588 * 123.88090 * 16.63018 * 6 5 4 31 31 C 1.50376 * 124.61298 * 0.25438 * 30 6 5 32 32 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 35 35 H 1.09000 * 109.43822 * 310.12025 * 4 2 1 36 36 H 1.08998 * 109.44527 * 70.04780 * 4 2 1 37 37 H 1.09002 * 109.69859 * 69.69280 * 5 4 2 38 38 H 1.09004 * 109.69166 * 190.27261 * 5 4 2 39 39 H 1.09004 * 110.31868 * 300.88521 * 14 13 11 40 40 H 1.08997 * 110.31777 * 63.07503 * 14 13 11 41 41 H 1.09001 * 112.36874 * 64.27529 * 17 15 14 42 42 H 1.08997 * 112.36654 * 191.71424 * 17 15 14 43 43 H 1.08997 * 110.18741 * 169.85204 * 20 18 13 44 44 H 1.09005 * 110.78466 * 47.53917 * 20 18 13 45 45 H 0.97000 * 120.00034 * 179.97438 * 25 24 22 46 46 H 1.08995 * 109.70298 * 256.55212 * 31 30 6 47 47 H 1.09001 * 109.69053 * 135.95136 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0402 -0.7216 1.2502 5 6 3.5533 -0.5088 1.3871 6 6 4.1999 -0.8404 0.0668 7 7 5.4923 -1.0910 -0.2002 8 1 6.2064 -1.0883 0.4562 9 7 5.6441 -1.3361 -1.4560 10 6 4.4804 -1.2608 -2.0788 11 6 4.2353 -1.4749 -3.5196 12 8 3.1089 -1.3751 -3.9660 13 7 5.2604 -1.7809 -4.3394 14 6 6.6816 -1.9403 -3.9638 15 6 7.4248 -2.2391 -5.3027 16 1 8.4965 -2.0404 -5.3140 17 6 6.5438 -1.3891 -6.2870 18 6 5.1893 -2.0337 -5.8090 19 1 4.2775 -1.7074 -6.3091 20 6 5.5636 -3.5673 -5.9445 21 7 7.0103 -3.6317 -5.6457 22 6 7.8085 -4.7439 -5.6773 23 1 8.8583 -4.6620 -5.4374 24 6 7.2683 -5.9765 -6.0176 25 7 5.9890 -6.0761 -6.3104 26 14 8.3571 -7.4938 -6.0600 27 1 8.3561 -8.1412 -4.7235 28 1 7.8375 -8.4477 -7.0724 29 1 9.7431 -7.0986 -6.4176 30 6 3.5224 -0.9367 -1.1037 31 6 2.0414 -0.7231 -1.2534 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 1.5366 -0.3221 2.1305 36 1 1.8305 -1.7878 1.1649 37 1 3.7563 0.5307 1.6447 38 1 3.9475 -1.1639 2.1640 39 1 7.0606 -1.0209 -3.5176 40 1 6.7989 -2.7741 -3.2717 41 1 6.5964 -0.3214 -6.0740 42 1 6.7604 -1.6087 -7.3324 43 1 5.3711 -3.9132 -6.9600 44 1 5.0021 -4.1672 -5.2282 45 1 5.6116 -6.9373 -6.5486 46 1 1.5395 -1.6855 -1.3530 47 1 1.8457 -0.1130 -2.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032708755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:15 Heat of formation + Delta-G solvation = 85.245894 kcal Electronic energy + Delta-G solvation = -29122.597624 eV Core-core repulsion = 25308.015143 eV Total energy + Delta-G solvation = -3814.582481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.75527 -39.72936 -37.67022 -37.50883 -33.56535 -32.72527 -31.61482 -31.39667 -29.66572 -28.69268 -28.40954 -26.53885 -25.14445 -24.33203 -23.51268 -22.71990 -21.34492 -20.14757 -19.68487 -19.12062 -18.31115 -17.63662 -17.03511 -16.14945 -15.86347 -15.55949 -14.92784 -14.71412 -14.50247 -14.21541 -13.89516 -13.79380 -13.34631 -13.19357 -13.08417 -12.92636 -12.55145 -12.23228 -12.08620 -11.83341 -11.77333 -11.52446 -11.25795 -11.06922 -10.94835 -10.83214 -10.79658 -10.72391 -10.63175 -10.50029 -10.43288 -10.14403 -10.02200 -9.58091 -9.52694 -9.19227 -8.65769 -8.58051 -7.84831 -6.85622 -5.71426 -3.05219 1.80385 2.17773 2.85619 3.40168 3.44655 3.47224 3.49774 3.83757 4.36289 4.46793 4.51154 4.60118 4.68518 4.90483 5.08278 5.10144 5.19104 5.29939 5.32015 5.38017 5.43122 5.49487 5.56862 5.65040 5.66549 5.69585 5.71678 5.78780 5.82972 5.86536 6.01521 6.05024 6.17563 6.30353 6.32246 6.33421 6.39283 6.51176 6.55652 6.67476 6.68848 6.84957 7.06393 7.48351 7.56289 7.77639 7.94783 8.15219 8.20089 8.70034 9.15979 9.76663 10.47048 11.40788 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.003182 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.459903 B = 8796.865334 C = 9042.388091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.045 4.045 6 C 0.001 3.999 7 N -0.380 5.380 8 H 0.442 0.558 9 N -0.252 5.252 10 C 0.008 3.992 11 C 0.611 3.389 12 O -0.547 6.547 13 N -0.593 5.593 14 C 0.098 3.902 15 C 0.138 3.862 16 H 0.104 0.896 17 C -0.151 4.151 18 C 0.096 3.904 19 H 0.116 0.884 20 C 0.178 3.822 21 N -0.598 5.598 22 C -0.228 4.228 23 H 0.080 0.920 24 C -0.008 4.008 25 N -0.920 5.920 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.145 4.145 31 C -0.035 4.035 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.253 0.747 46 H 0.075 0.925 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 14.629 15.181 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.084 4.084 6 C -0.125 4.125 7 N -0.092 5.092 8 H 0.286 0.714 9 N -0.087 5.087 10 C -0.152 4.152 11 C 0.398 3.602 12 O -0.425 6.425 13 N -0.325 5.325 14 C -0.027 4.027 15 C 0.029 3.971 16 H 0.121 0.879 17 C -0.190 4.190 18 C -0.006 4.006 19 H 0.133 0.867 20 C 0.053 3.947 21 N -0.322 5.322 22 C -0.356 4.356 23 H 0.098 0.902 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.743 3.257 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.155 4.155 31 C -0.073 4.073 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.604 14.178 14.698 20.934 hybrid contribution 0.300 -0.878 0.640 1.127 sum -4.304 13.300 15.337 20.752 Atomic orbital electron populations 1.21813 0.94811 1.02062 1.01664 1.21263 0.95696 0.99633 0.94548 0.91089 1.21630 0.93324 1.01632 0.98177 1.20186 0.95510 1.01838 0.90829 1.21110 0.85191 1.08186 0.98059 1.43040 1.07990 1.50982 1.07163 0.71435 1.74064 1.24800 1.18863 0.90999 1.21669 0.89910 1.08339 0.95328 1.16452 0.83823 0.77344 0.82627 1.90733 1.21755 1.54199 1.75795 1.49028 1.08105 1.66128 1.09214 1.23246 0.79942 1.00132 0.99377 1.23215 0.96536 0.86439 0.90912 0.87859 1.24175 0.96351 0.98000 1.00501 1.24927 0.97742 0.99228 0.78749 0.86668 1.22361 0.84442 0.87506 1.00434 1.45203 1.05297 1.01697 1.80017 1.19044 0.91417 0.84860 1.40256 0.90212 1.24810 0.96201 0.97631 1.01771 1.69905 1.10744 1.23755 1.52277 0.86117 0.79353 0.82961 0.77286 1.21724 1.21710 1.20674 1.19852 0.97173 1.07725 0.90724 1.20017 0.88617 1.01085 0.97630 0.92815 0.92477 0.92353 0.91018 0.91254 0.90146 0.90451 0.92589 0.90850 0.91578 0.89811 0.92643 0.93410 0.93633 0.90615 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.16 37.16 0.34 -0.84 16 2 C -0.09 -0.87 2.70 -90.32 -0.24 -1.11 16 3 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 4 C -0.11 -0.86 5.19 -26.47 -0.14 -0.99 16 5 C -0.04 -0.34 6.31 -27.67 -0.17 -0.52 16 6 C 0.00 0.02 7.12 -82.45 -0.59 -0.57 16 7 N -0.38 -4.50 6.82 33.42 0.23 -4.27 16 8 H 0.44 3.44 8.96 -190.22 -1.71 1.74 16 9 N -0.25 -4.04 10.05 33.28 0.33 -3.70 16 10 C 0.01 0.14 6.98 -82.99 -0.58 -0.44 16 11 C 0.61 12.58 7.90 -12.39 -0.10 12.49 16 12 O -0.55 -12.17 16.15 5.30 0.09 -12.08 16 13 N -0.59 -12.05 2.95 -156.21 -0.46 -12.51 16 14 C 0.10 1.89 4.96 -1.67 -0.01 1.88 16 15 C 0.14 2.72 5.47 -62.55 -0.34 2.38 16 16 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 17 C -0.15 -2.68 6.86 -22.10 -0.15 -2.84 16 18 C 0.10 1.95 5.35 -60.96 -0.33 1.63 16 19 H 0.12 2.24 8.05 -51.93 -0.42 1.82 16 20 C 0.18 4.43 4.88 -0.29 0.00 4.42 16 21 N -0.60 -14.92 3.02 -154.76 -0.47 -15.39 16 22 C -0.23 -6.22 10.37 -15.06 -0.16 -6.38 16 23 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 24 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -27.35 10.56 55.49 0.59 -26.77 16 26 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 C -0.14 -2.16 5.99 -104.88 -0.63 -2.78 16 31 C -0.04 -0.47 4.84 -27.79 -0.13 -0.60 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 36 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.96 7.74 -51.93 -0.40 0.56 16 40 H 0.07 1.59 7.93 -51.93 -0.41 1.18 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 44 H 0.05 1.37 7.67 -51.93 -0.40 0.98 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 47 H 0.08 1.22 7.67 -51.93 -0.40 0.82 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -33.84 369.24 -11.21 -45.05 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.73 Total: 1.56 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -3.32 Total: 5.42 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.22 Total: -62.63 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.84 -11.21 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032708755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.298 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds