Wall clock time and date at job start Tue Mar 31 2020 16:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53104 * 109.46785 * 119.99079 * 2 1 3 5 5 C 1.53402 * 109.64618 * 190.07298 * 4 2 1 6 6 C 1.50710 * 108.33212 * 309.98059 * 5 4 2 7 7 N 1.34321 * 128.90610 * 196.62586 * 6 5 4 8 8 H 0.96996 * 124.97857 * 359.90336 * 7 6 5 9 9 N 1.28843 * 110.03953 * 179.86616 * 7 6 5 10 10 C 1.32208 * 110.15426 * 0.07957 * 9 7 6 11 11 C 1.47709 * 126.67913 * 179.97438 * 10 9 7 12 12 O 1.21572 * 120.00058 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99961 * 359.97026 * 11 10 9 14 14 C 1.47865 * 126.94440 * 0.02641 * 13 11 10 15 15 C 1.56026 * 105.10235 * 181.97929 * 14 13 11 16 16 H 1.09000 * 116.24861 * 158.83560 * 15 14 13 17 17 C 1.57082 * 99.60592 * 32.80704 * 15 14 13 18 18 C 1.49292 * 126.94350 * 179.71354 * 13 11 10 19 19 H 1.08997 * 116.15172 * 15.85979 * 18 13 11 20 20 C 1.58438 * 103.70050 * 246.54411 * 18 13 11 21 21 N 1.47864 * 104.83232 * 288.54782 * 20 18 13 22 22 C 1.36938 * 126.94309 * 182.30617 * 21 20 18 23 23 H 1.07999 * 119.99423 * 179.97438 * 22 21 20 24 24 C 1.38811 * 119.99964 * 359.97438 * 22 21 20 25 25 N 1.31614 * 120.00114 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99703 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47177 * 90.00485 * 26 24 22 28 28 H 1.48494 * 109.47095 * 210.00276 * 26 24 22 29 29 H 1.48497 * 109.47226 * 330.00275 * 26 24 22 30 30 C 1.35588 * 123.88090 * 16.63018 * 6 5 4 31 31 C 1.50376 * 124.61298 * 0.25438 * 30 6 5 32 32 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 35 35 H 1.09000 * 109.43822 * 310.12025 * 4 2 1 36 36 H 1.08998 * 109.44527 * 70.04780 * 4 2 1 37 37 H 1.09002 * 109.69859 * 69.69280 * 5 4 2 38 38 H 1.09004 * 109.69166 * 190.27261 * 5 4 2 39 39 H 1.09004 * 110.31868 * 300.88521 * 14 13 11 40 40 H 1.08997 * 110.31777 * 63.07503 * 14 13 11 41 41 H 1.09001 * 112.36874 * 64.27529 * 17 15 14 42 42 H 1.08997 * 112.36654 * 191.71424 * 17 15 14 43 43 H 1.08997 * 110.18741 * 169.85204 * 20 18 13 44 44 H 1.09005 * 110.78466 * 47.53917 * 20 18 13 45 45 H 0.97000 * 120.00034 * 179.97438 * 25 24 22 46 46 H 1.08995 * 109.70298 * 256.55212 * 31 30 6 47 47 H 1.09001 * 109.69053 * 135.95136 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0402 -0.7216 1.2502 5 6 3.5533 -0.5088 1.3871 6 6 4.1999 -0.8404 0.0668 7 7 5.4923 -1.0910 -0.2002 8 1 6.2064 -1.0883 0.4562 9 7 5.6441 -1.3361 -1.4560 10 6 4.4804 -1.2608 -2.0788 11 6 4.2353 -1.4749 -3.5196 12 8 3.1089 -1.3751 -3.9660 13 7 5.2604 -1.7809 -4.3394 14 6 6.6816 -1.9403 -3.9638 15 6 7.4248 -2.2391 -5.3027 16 1 8.4965 -2.0404 -5.3140 17 6 6.5438 -1.3891 -6.2870 18 6 5.1893 -2.0337 -5.8090 19 1 4.2775 -1.7074 -6.3091 20 6 5.5636 -3.5673 -5.9445 21 7 7.0103 -3.6317 -5.6457 22 6 7.8085 -4.7439 -5.6773 23 1 8.8583 -4.6620 -5.4374 24 6 7.2683 -5.9765 -6.0176 25 7 5.9890 -6.0761 -6.3104 26 14 8.3571 -7.4938 -6.0600 27 1 8.3561 -8.1412 -4.7235 28 1 7.8375 -8.4477 -7.0724 29 1 9.7431 -7.0986 -6.4176 30 6 3.5224 -0.9367 -1.1037 31 6 2.0414 -0.7231 -1.2534 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 1.5366 -0.3221 2.1305 36 1 1.8305 -1.7878 1.1649 37 1 3.7563 0.5307 1.6447 38 1 3.9475 -1.1639 2.1640 39 1 7.0606 -1.0209 -3.5176 40 1 6.7989 -2.7741 -3.2717 41 1 6.5964 -0.3214 -6.0740 42 1 6.7604 -1.6087 -7.3324 43 1 5.3711 -3.9132 -6.9600 44 1 5.0021 -4.1672 -5.2282 45 1 5.6116 -6.9373 -6.5486 46 1 1.5395 -1.6855 -1.3530 47 1 1.8457 -0.1130 -2.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032708755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:14 Heat of formation + Delta-G solvation = 63.634951 kcal Electronic energy + Delta-G solvation = -29123.534745 eV Core-core repulsion = 25308.015143 eV Total energy + Delta-G solvation = -3815.519602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.85239 -41.39266 -39.20368 -38.43899 -35.48349 -33.89427 -33.10734 -32.48997 -30.98117 -30.23890 -30.13337 -27.43625 -27.00261 -25.91344 -24.39268 -24.25147 -22.32810 -21.62284 -21.38584 -20.12829 -19.89600 -18.75741 -18.68344 -17.73360 -17.34799 -17.01191 -16.48496 -16.05682 -15.69506 -15.63750 -15.15702 -14.99467 -14.72314 -14.46479 -14.12578 -14.01260 -13.82015 -13.57404 -13.43670 -13.33182 -13.13433 -12.96213 -12.84088 -12.71266 -12.46341 -12.33311 -12.15010 -12.06340 -11.94082 -11.77766 -11.64449 -11.54164 -11.49250 -11.42514 -11.03017 -10.74154 -10.36272 -9.66123 -9.49717 -8.91738 -7.84825 -5.20869 0.51328 1.08947 1.44999 1.47144 1.55938 1.77229 2.12143 2.34470 2.47667 3.26660 3.32645 3.43859 3.61491 3.68969 3.81601 3.88922 3.92387 3.95794 4.10830 4.17088 4.25253 4.27385 4.52239 4.60259 4.60991 4.68922 4.72631 4.83189 4.88591 4.94005 4.97215 4.99100 5.00424 5.03707 5.09833 5.10866 5.20129 5.26542 5.32139 5.43064 5.45465 5.48621 5.54021 5.57314 5.63732 6.08898 6.15686 6.57793 6.81070 7.02083 7.13447 7.69684 8.41252 9.26463 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017286 B = 0.003182 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.459903 B = 8796.865334 C = 9042.388091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.108 4.108 5 C -0.042 4.042 6 C 0.028 3.972 7 N -0.358 5.358 8 H 0.461 0.539 9 N -0.269 5.269 10 C -0.030 4.030 11 C 0.602 3.398 12 O -0.577 6.577 13 N -0.599 5.599 14 C 0.113 3.887 15 C 0.133 3.867 16 H 0.134 0.866 17 C -0.126 4.126 18 C 0.100 3.900 19 H 0.121 0.879 20 C 0.190 3.810 21 N -0.616 5.616 22 C -0.230 4.230 23 H 0.095 0.905 24 C -0.073 4.073 25 N -0.958 5.958 26 Si 0.980 3.020 27 H -0.292 1.292 28 H -0.299 1.299 29 H -0.261 1.261 30 C -0.173 4.173 31 C -0.034 4.034 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.023 0.977 44 H -0.007 1.007 45 H 0.244 0.756 46 H 0.055 0.945 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 16.966 18.209 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.081 4.081 6 C -0.100 4.100 7 N -0.073 5.073 8 H 0.310 0.690 9 N -0.106 5.106 10 C -0.188 4.188 11 C 0.391 3.609 12 O -0.456 6.456 13 N -0.331 5.331 14 C -0.011 4.011 15 C 0.027 3.973 16 H 0.151 0.849 17 C -0.165 4.165 18 C -0.003 4.003 19 H 0.139 0.861 20 C 0.064 3.936 21 N -0.341 5.341 22 C -0.359 4.359 23 H 0.113 0.887 24 C -0.266 4.266 25 N -0.607 5.607 26 Si 0.808 3.192 27 H -0.219 1.219 28 H -0.226 1.226 29 H -0.185 1.185 30 C -0.184 4.184 31 C -0.072 4.072 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.041 0.959 44 H 0.012 0.988 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.824 16.560 17.749 24.438 hybrid contribution -0.250 -1.568 -0.206 1.601 sum -3.074 14.992 17.543 23.280 Atomic orbital electron populations 1.21807 0.93997 1.01978 1.02421 1.21234 0.96375 0.99532 0.93317 0.90341 1.21664 0.93818 1.00875 0.98278 1.20458 0.94742 1.04128 0.88726 1.21710 0.84461 1.04982 0.98869 1.43136 1.08999 1.48890 1.06324 0.69032 1.73935 1.24274 1.19667 0.92727 1.21443 0.91813 1.11244 0.94346 1.16969 0.83363 0.76611 0.83996 1.90693 1.22776 1.55446 1.76731 1.49115 1.08707 1.66201 1.09047 1.23038 0.79327 1.00289 0.98455 1.23614 0.98534 0.83784 0.91411 0.84861 1.24081 0.92926 0.99384 1.00088 1.24813 0.99705 0.96037 0.79769 0.86148 1.21951 0.84620 0.90133 0.96865 1.45455 1.05075 1.03585 1.79943 1.19545 0.92282 0.85704 1.38331 0.88716 1.25698 0.97426 1.00851 1.02593 1.70160 1.12709 1.23615 1.54232 0.85049 0.78478 0.79036 0.76602 1.21923 1.22624 1.18502 1.20162 0.97787 1.09025 0.91394 1.19986 0.88161 1.00095 0.98995 0.90423 0.93020 0.93220 0.87792 0.92442 0.87315 0.87629 0.89678 0.93773 0.88008 0.89419 0.95895 0.98834 0.94691 0.92657 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.16 71.98 0.66 -1.48 16 2 C -0.09 -1.47 2.70 -10.60 -0.03 -1.49 16 3 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 4 C -0.11 -1.32 5.19 30.76 0.16 -1.16 16 5 C -0.04 -0.45 6.31 29.99 0.19 -0.26 16 6 C 0.03 0.59 7.12 41.57 0.30 0.88 16 7 N -0.36 -7.64 6.82 -48.17 -0.33 -7.97 16 8 H 0.46 5.63 8.96 -219.81 -1.97 3.66 16 9 N -0.27 -8.41 10.05 -48.62 -0.49 -8.90 16 10 C -0.03 -1.11 6.98 42.14 0.29 -0.82 16 11 C 0.60 25.92 7.90 86.75 0.69 26.61 16 12 O -0.58 -27.31 16.15 -3.94 -0.06 -27.38 16 13 N -0.60 -24.94 2.95 -766.38 -2.26 -27.20 16 14 C 0.11 4.30 4.96 87.17 0.43 4.73 16 15 C 0.13 5.07 5.47 46.93 0.26 5.33 16 16 H 0.13 4.30 8.14 -2.39 -0.02 4.28 16 17 C -0.13 -4.26 6.86 33.59 0.23 -4.03 16 18 C 0.10 4.17 5.35 47.96 0.26 4.42 16 19 H 0.12 4.87 8.05 -2.39 -0.02 4.86 16 20 C 0.19 10.06 4.88 88.06 0.43 10.49 16 21 N -0.62 -31.34 3.02 -643.53 -1.95 -33.28 16 22 C -0.23 -12.69 10.37 84.03 0.87 -11.82 16 23 H 0.10 4.83 7.83 -2.91 -0.02 4.80 16 24 C -0.07 -4.25 5.49 84.86 0.47 -3.78 16 25 N -0.96 -60.15 10.56 21.65 0.23 -59.93 16 26 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 30 C -0.17 -5.17 5.99 -20.03 -0.12 -5.29 16 31 C -0.03 -0.93 4.84 29.91 0.14 -0.79 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.10 0.69 8.11 -2.39 -0.02 0.67 16 36 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.09 2.75 7.74 -2.38 -0.02 2.73 16 40 H 0.04 1.94 7.93 -2.39 -0.02 1.92 16 41 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.02 1.34 7.46 -2.39 -0.02 1.32 16 44 H -0.01 -0.41 7.67 -2.38 -0.02 -0.43 16 45 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.05 1.67 8.12 -2.39 -0.02 1.65 16 47 H 0.06 1.82 7.67 -2.39 -0.02 1.80 16 Total: -1.00 -80.51 369.24 1.41 -79.10 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -0.99 Total: 15.46 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 5.22 Total: 21.56 kcal Atomic # 7 Polarization: -132.48 SS G_CDS: -4.79 Total: -137.27 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.06 Total: -27.38 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -80.51 1.41 -79.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032708755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.735 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds