Wall clock time and date at job start Tue Mar 31 2020 16:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46311 * 2 1 4 4 C 1.53109 * 109.46545 * 240.01369 * 2 1 3 5 5 C 1.53400 * 109.64649 * 169.93521 * 4 2 1 6 6 C 1.50710 * 108.33832 * 50.01119 * 5 4 2 7 7 N 1.34311 * 128.90893 * 163.23929 * 6 5 4 8 8 H 0.97002 * 124.97959 * 0.25851 * 7 6 5 9 9 N 1.28844 * 110.04602 * 180.26043 * 7 6 5 10 10 C 1.32208 * 110.15030 * 359.92910 * 9 7 6 11 11 C 1.47708 * 126.68279 * 179.97438 * 10 9 7 12 12 O 1.21569 * 120.00116 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99723 * 0.02562 * 11 10 9 14 14 C 1.47872 * 126.94490 * 0.02689 * 13 11 10 15 15 C 1.56017 * 105.10241 * 181.97765 * 14 13 11 16 16 H 1.09002 * 116.24699 * 158.84009 * 15 14 13 17 17 C 1.57077 * 99.60750 * 32.80376 * 15 14 13 18 18 C 1.49293 * 126.94343 * 179.70568 * 13 11 10 19 19 H 1.08998 * 116.14717 * 16.72915 * 18 13 11 20 20 C 1.56018 * 104.09229 * 246.72424 * 18 13 11 21 21 N 1.47367 * 105.14890 * 288.60631 * 20 18 13 22 22 C 1.36937 * 126.79132 * 182.06298 * 21 20 18 23 23 H 1.07994 * 119.99546 * 173.96416 * 22 21 20 24 24 C 1.38808 * 119.99859 * 353.95898 * 22 21 20 25 25 N 1.31622 * 120.00096 * 6.45655 * 24 22 21 26 26 Si 1.86796 * 119.99966 * 186.45960 * 24 22 21 27 27 H 1.48503 * 109.47439 * 94.98513 * 26 24 22 28 28 H 1.48502 * 109.47278 * 214.98532 * 26 24 22 29 29 H 1.48499 * 109.47120 * 334.98511 * 26 24 22 30 30 C 1.35592 * 123.87853 * 343.38274 * 6 5 4 31 31 C 1.50376 * 124.61439 * 359.72393 * 30 6 5 32 32 H 1.09003 * 109.47302 * 300.02210 * 1 2 3 33 33 H 1.09008 * 109.47086 * 60.02255 * 1 2 3 34 34 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.44343 * 49.88306 * 4 2 1 36 36 H 1.09004 * 109.41497 * 289.97049 * 4 2 1 37 37 H 1.09003 * 109.68975 * 290.30156 * 5 4 2 38 38 H 1.08999 * 109.69389 * 169.72268 * 5 4 2 39 39 H 1.09002 * 110.31283 * 300.88767 * 14 13 11 40 40 H 1.09000 * 110.31198 * 63.06666 * 14 13 11 41 41 H 1.09001 * 112.36817 * 64.27404 * 17 15 14 42 42 H 1.09001 * 112.36787 * 191.62597 * 17 15 14 43 43 H 1.08995 * 110.31597 * 47.67625 * 20 18 13 44 44 H 1.09001 * 110.31348 * 169.76314 * 20 18 13 45 45 H 0.97002 * 119.99762 * 179.97438 * 25 24 22 46 46 H 1.09007 * 109.70142 * 103.46388 * 31 30 6 47 47 H 1.08997 * 109.70161 * 224.06444 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0402 -0.7215 -1.2503 5 6 3.5532 -0.5089 -1.3871 6 6 4.1999 -0.8406 -0.0669 7 7 5.4917 -1.0937 0.1997 8 1 6.2059 -1.0910 -0.4567 9 7 5.6435 -1.3404 1.4552 10 6 4.4799 -1.2640 2.0782 11 6 4.2344 -1.4803 3.5186 12 8 3.1082 -1.3790 3.9652 13 7 5.2589 -1.7900 4.3378 14 6 6.6800 -1.9506 3.9620 15 6 7.4064 -2.3551 5.2822 16 1 8.3661 -2.8593 5.1693 17 6 6.2590 -3.1773 5.9713 18 6 5.1893 -2.0337 5.8090 19 1 4.1981 -2.2317 6.2168 20 6 5.9826 -0.8420 6.4294 21 7 7.3945 -1.1066 6.1008 22 6 8.4774 -0.3537 6.4692 23 1 9.4762 -0.7011 6.2505 24 6 8.2910 0.8562 7.1236 25 7 7.0844 1.2201 7.5033 26 14 9.7527 1.9680 7.4655 27 1 9.8712 2.9770 6.3823 28 1 9.5563 2.6582 8.7656 29 1 10.9926 1.1526 7.5202 30 6 3.5223 -0.9370 1.1036 31 6 2.0414 -0.7231 1.2535 32 1 -0.3634 0.5142 0.8898 33 1 -0.3634 0.5135 -0.8902 34 1 -0.3633 -1.0276 0.0005 35 1 1.5366 -0.3219 -2.1307 36 1 1.8298 -1.7876 -1.1647 37 1 3.7562 0.5306 -1.6447 38 1 3.9474 -1.1640 -2.1640 39 1 6.7873 -2.7368 3.2147 40 1 7.0798 -1.0100 3.5829 41 1 5.9985 -4.0755 5.4114 42 1 6.4765 -3.3972 7.0165 43 1 5.6588 0.0997 5.9862 44 1 5.8451 -0.8179 7.5104 45 1 6.9543 2.0654 7.9609 46 1 1.5392 -1.6855 1.3531 47 1 1.8456 -0.1129 2.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032708756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:18 Heat of formation + Delta-G solvation = 85.580312 kcal Electronic energy + Delta-G solvation = -29160.862662 eV Core-core repulsion = 25346.294682 eV Total energy + Delta-G solvation = -3814.567980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.75260 -39.81199 -37.67026 -37.53598 -33.56903 -32.72367 -31.61311 -31.41145 -29.66875 -28.76567 -28.44317 -26.53415 -25.14542 -24.32839 -23.51161 -22.73613 -21.33897 -20.12856 -19.70336 -19.11680 -18.31279 -17.63164 -17.04588 -16.14856 -15.88917 -15.53182 -14.91453 -14.75888 -14.48539 -14.23292 -13.92349 -13.75473 -13.32656 -13.19698 -13.09119 -12.93193 -12.56594 -12.22387 -12.07554 -11.82418 -11.78329 -11.53860 -11.27414 -11.06718 -10.94504 -10.83243 -10.82128 -10.70126 -10.63842 -10.51416 -10.42269 -10.14713 -10.01462 -9.61282 -9.50169 -9.19031 -8.62756 -8.57845 -7.86000 -6.84513 -5.72509 -3.05561 1.80765 2.18123 2.85829 3.40198 3.44999 3.47614 3.49609 3.84391 4.36572 4.46961 4.51557 4.60113 4.68560 4.91033 5.08370 5.08949 5.20212 5.31087 5.32089 5.38077 5.42370 5.49865 5.57005 5.65914 5.67012 5.69536 5.73377 5.81553 5.84184 5.86519 6.02500 6.05868 6.17568 6.31152 6.33017 6.33219 6.40405 6.51468 6.56064 6.67258 6.69620 6.84846 7.06521 7.47051 7.59317 7.78291 7.95098 8.16068 8.20450 8.70370 9.16381 9.76905 10.47227 11.39839 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.003239 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.966754 B = 8642.177608 C = 8850.703179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.045 4.045 6 C 0.001 3.999 7 N -0.380 5.380 8 H 0.442 0.558 9 N -0.252 5.252 10 C 0.008 3.992 11 C 0.611 3.389 12 O -0.547 6.547 13 N -0.593 5.593 14 C 0.098 3.902 15 C 0.137 3.863 16 H 0.105 0.895 17 C -0.152 4.152 18 C 0.099 3.901 19 H 0.115 0.885 20 C 0.176 3.824 21 N -0.597 5.597 22 C -0.230 4.230 23 H 0.080 0.920 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.910 3.090 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.145 4.145 31 C -0.035 4.035 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.074 0.926 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -6.548 -18.781 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.125 4.125 7 N -0.092 5.092 8 H 0.286 0.714 9 N -0.087 5.087 10 C -0.152 4.152 11 C 0.398 3.602 12 O -0.425 6.425 13 N -0.325 5.325 14 C -0.027 4.027 15 C 0.029 3.971 16 H 0.123 0.877 17 C -0.192 4.192 18 C -0.003 4.003 19 H 0.133 0.867 20 C 0.051 3.949 21 N -0.321 5.321 22 C -0.358 4.358 23 H 0.098 0.902 24 C -0.202 4.202 25 N -0.564 5.564 26 Si 0.741 3.259 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.206 1.206 30 C -0.155 4.155 31 C -0.073 4.073 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.741 -6.441 -18.206 20.806 hybrid contribution 0.566 0.962 -0.402 1.186 sum -7.175 -5.479 -18.608 20.683 Atomic orbital electron populations 1.21808 0.94807 1.01931 1.01756 1.21274 0.95700 0.99817 0.94494 0.90976 1.21621 0.93330 1.01459 0.98215 1.20190 0.95484 1.01955 0.90778 1.21106 0.85165 1.08169 0.98092 1.43038 1.07977 1.51003 1.07156 0.71437 1.74066 1.24564 1.19152 0.90944 1.21670 0.89843 1.08439 0.95281 1.16447 0.83809 0.77353 0.82608 1.90732 1.21979 1.53896 1.75851 1.49036 1.07966 1.66425 1.09064 1.23233 0.80065 1.01078 0.98299 1.23235 0.95743 0.88758 0.89411 0.87730 1.24221 0.97358 0.96132 1.01478 1.24463 0.98933 0.97797 0.79117 0.86735 1.21814 0.82417 0.92739 0.97955 1.45100 1.02956 1.24921 1.59117 1.19045 0.85580 0.98996 1.32181 0.90208 1.24834 0.96704 0.97825 1.00886 1.69939 1.19675 1.22897 1.43855 0.86129 0.81573 0.80939 0.77286 1.21738 1.21792 1.20603 1.19855 0.97225 1.07721 0.90690 1.20012 0.88559 1.00939 0.97790 0.92294 0.92807 0.92576 0.91027 0.91364 0.90080 0.90492 0.92589 0.90841 0.91645 0.89819 0.93248 0.92942 0.93647 0.90760 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.16 37.15 0.34 -0.85 16 2 C -0.09 -0.91 2.70 -90.32 -0.24 -1.15 16 3 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 4 C -0.11 -0.83 5.19 -26.47 -0.14 -0.96 16 5 C -0.05 -0.35 6.31 -27.67 -0.17 -0.52 16 6 C 0.00 0.02 7.12 -82.45 -0.59 -0.57 16 7 N -0.38 -4.51 6.82 33.42 0.23 -4.29 16 8 H 0.44 3.46 8.96 -190.21 -1.71 1.76 16 9 N -0.25 -4.05 10.05 33.28 0.33 -3.71 16 10 C 0.01 0.14 6.98 -82.99 -0.58 -0.44 16 11 C 0.61 12.63 7.90 -12.39 -0.10 12.53 16 12 O -0.55 -12.20 16.15 5.31 0.09 -12.11 16 13 N -0.59 -12.09 2.95 -157.70 -0.46 -12.55 16 14 C 0.10 1.90 4.98 -1.67 -0.01 1.89 16 15 C 0.14 2.71 5.53 -62.55 -0.35 2.36 16 16 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 17 C -0.15 -2.71 6.83 -22.11 -0.15 -2.87 16 18 C 0.10 2.03 5.25 -62.35 -0.33 1.70 16 19 H 0.11 2.23 8.06 -51.93 -0.42 1.81 16 20 C 0.18 4.38 4.75 -1.95 -0.01 4.37 16 21 N -0.60 -14.88 3.01 -156.74 -0.47 -15.35 16 22 C -0.23 -6.28 10.36 -15.06 -0.16 -6.44 16 23 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -27.30 10.58 55.49 0.59 -26.71 16 26 Si 0.91 22.15 29.56 -169.99 -5.02 17.12 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 C -0.14 -2.17 5.99 -104.88 -0.63 -2.79 16 31 C -0.03 -0.46 4.84 -27.79 -0.13 -0.60 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 36 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.96 7.74 -51.93 -0.40 0.56 16 40 H 0.07 1.60 7.94 -51.93 -0.41 1.19 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.05 1.42 7.53 -51.93 -0.39 1.03 16 44 H 0.05 1.42 7.60 -51.93 -0.39 1.02 16 45 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.07 0.97 8.12 -51.92 -0.42 0.55 16 47 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -33.87 369.07 -11.24 -45.11 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.74 Total: 1.53 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.34 Total: 5.41 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.21 Total: -62.62 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.87 -11.24 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032708756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.687 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds