Wall clock time and date at job start Tue Mar 31 2020 16:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46311 * 2 1 4 4 C 1.53109 * 109.46545 * 240.01369 * 2 1 3 5 5 C 1.53400 * 109.64649 * 169.93521 * 4 2 1 6 6 C 1.50710 * 108.33832 * 50.01119 * 5 4 2 7 7 N 1.34311 * 128.90893 * 163.23929 * 6 5 4 8 8 H 0.97002 * 124.97959 * 0.25851 * 7 6 5 9 9 N 1.28844 * 110.04602 * 180.26043 * 7 6 5 10 10 C 1.32208 * 110.15030 * 359.92910 * 9 7 6 11 11 C 1.47708 * 126.68279 * 179.97438 * 10 9 7 12 12 O 1.21569 * 120.00116 * 180.02562 * 11 10 9 13 13 N 1.34779 * 119.99723 * 0.02562 * 11 10 9 14 14 C 1.47872 * 126.94490 * 0.02689 * 13 11 10 15 15 C 1.56017 * 105.10241 * 181.97765 * 14 13 11 16 16 H 1.09002 * 116.24699 * 158.84009 * 15 14 13 17 17 C 1.57077 * 99.60750 * 32.80376 * 15 14 13 18 18 C 1.49293 * 126.94343 * 179.70568 * 13 11 10 19 19 H 1.08998 * 116.14717 * 16.72915 * 18 13 11 20 20 C 1.56018 * 104.09229 * 246.72424 * 18 13 11 21 21 N 1.47367 * 105.14890 * 288.60631 * 20 18 13 22 22 C 1.36937 * 126.79132 * 182.06298 * 21 20 18 23 23 H 1.07994 * 119.99546 * 173.96416 * 22 21 20 24 24 C 1.38808 * 119.99859 * 353.95898 * 22 21 20 25 25 N 1.31622 * 120.00096 * 6.45655 * 24 22 21 26 26 Si 1.86796 * 119.99966 * 186.45960 * 24 22 21 27 27 H 1.48503 * 109.47439 * 94.98513 * 26 24 22 28 28 H 1.48502 * 109.47278 * 214.98532 * 26 24 22 29 29 H 1.48499 * 109.47120 * 334.98511 * 26 24 22 30 30 C 1.35592 * 123.87853 * 343.38274 * 6 5 4 31 31 C 1.50376 * 124.61439 * 359.72393 * 30 6 5 32 32 H 1.09003 * 109.47302 * 300.02210 * 1 2 3 33 33 H 1.09008 * 109.47086 * 60.02255 * 1 2 3 34 34 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.44343 * 49.88306 * 4 2 1 36 36 H 1.09004 * 109.41497 * 289.97049 * 4 2 1 37 37 H 1.09003 * 109.68975 * 290.30156 * 5 4 2 38 38 H 1.08999 * 109.69389 * 169.72268 * 5 4 2 39 39 H 1.09002 * 110.31283 * 300.88767 * 14 13 11 40 40 H 1.09000 * 110.31198 * 63.06666 * 14 13 11 41 41 H 1.09001 * 112.36817 * 64.27404 * 17 15 14 42 42 H 1.09001 * 112.36787 * 191.62597 * 17 15 14 43 43 H 1.08995 * 110.31597 * 47.67625 * 20 18 13 44 44 H 1.09001 * 110.31348 * 169.76314 * 20 18 13 45 45 H 0.97002 * 119.99762 * 179.97438 * 25 24 22 46 46 H 1.09007 * 109.70142 * 103.46388 * 31 30 6 47 47 H 1.08997 * 109.70161 * 224.06444 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0402 -0.7215 -1.2503 5 6 3.5532 -0.5089 -1.3871 6 6 4.1999 -0.8406 -0.0669 7 7 5.4917 -1.0937 0.1997 8 1 6.2059 -1.0910 -0.4567 9 7 5.6435 -1.3404 1.4552 10 6 4.4799 -1.2640 2.0782 11 6 4.2344 -1.4803 3.5186 12 8 3.1082 -1.3790 3.9652 13 7 5.2589 -1.7900 4.3378 14 6 6.6800 -1.9506 3.9620 15 6 7.4064 -2.3551 5.2822 16 1 8.3661 -2.8593 5.1693 17 6 6.2590 -3.1773 5.9713 18 6 5.1893 -2.0337 5.8090 19 1 4.1981 -2.2317 6.2168 20 6 5.9826 -0.8420 6.4294 21 7 7.3945 -1.1066 6.1008 22 6 8.4774 -0.3537 6.4692 23 1 9.4762 -0.7011 6.2505 24 6 8.2910 0.8562 7.1236 25 7 7.0844 1.2201 7.5033 26 14 9.7527 1.9680 7.4655 27 1 9.8712 2.9770 6.3823 28 1 9.5563 2.6582 8.7656 29 1 10.9926 1.1526 7.5202 30 6 3.5223 -0.9370 1.1036 31 6 2.0414 -0.7231 1.2535 32 1 -0.3634 0.5142 0.8898 33 1 -0.3634 0.5135 -0.8902 34 1 -0.3633 -1.0276 0.0005 35 1 1.5366 -0.3219 -2.1307 36 1 1.8298 -1.7876 -1.1647 37 1 3.7562 0.5306 -1.6447 38 1 3.9474 -1.1640 -2.1640 39 1 6.7873 -2.7368 3.2147 40 1 7.0798 -1.0100 3.5829 41 1 5.9985 -4.0755 5.4114 42 1 6.4765 -3.3972 7.0165 43 1 5.6588 0.0997 5.9862 44 1 5.8451 -0.8179 7.5104 45 1 6.9543 2.0654 7.9609 46 1 1.5392 -1.6855 1.3531 47 1 1.8456 -0.1129 2.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032708756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:17 Heat of formation + Delta-G solvation = 63.899551 kcal Electronic energy + Delta-G solvation = -29161.802810 eV Core-core repulsion = 25346.294682 eV Total energy + Delta-G solvation = -3815.508128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.85333 -41.48155 -39.23463 -38.44142 -35.48740 -33.90299 -33.12209 -32.49354 -31.00236 -30.33379 -30.13102 -27.43775 -26.99333 -25.92088 -24.40768 -24.24871 -22.32565 -21.60984 -21.40269 -20.12598 -19.91174 -18.76564 -18.68318 -17.71972 -17.41435 -16.98224 -16.46691 -16.06751 -15.78776 -15.59081 -15.17260 -15.00829 -14.67423 -14.49659 -14.12274 -14.00962 -13.81010 -13.56957 -13.45106 -13.34862 -13.15940 -12.95688 -12.84665 -12.74471 -12.45916 -12.34003 -12.15588 -12.05260 -11.93445 -11.77704 -11.65465 -11.55436 -11.48823 -11.42698 -11.02857 -10.72494 -10.36366 -9.66393 -9.50561 -8.90691 -7.86280 -5.21397 0.51409 1.08991 1.44467 1.46629 1.55595 1.76954 2.11932 2.34809 2.47272 3.26032 3.31273 3.43690 3.61454 3.69086 3.81642 3.89961 3.93729 4.01338 4.10787 4.18862 4.25528 4.27424 4.51628 4.59733 4.60820 4.68843 4.72594 4.82444 4.88368 4.94801 4.96760 4.98886 5.00473 5.03540 5.09675 5.11268 5.20286 5.25743 5.32254 5.43222 5.45650 5.49323 5.55215 5.56687 5.63840 6.09424 6.15695 6.57831 6.81059 7.02319 7.13495 7.69851 8.41084 9.25305 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.003239 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.966754 B = 8642.177608 C = 8850.703179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.105 4.105 5 C -0.043 4.043 6 C 0.028 3.972 7 N -0.358 5.358 8 H 0.461 0.539 9 N -0.269 5.269 10 C -0.030 4.030 11 C 0.602 3.398 12 O -0.577 6.577 13 N -0.599 5.599 14 C 0.113 3.887 15 C 0.133 3.867 16 H 0.136 0.864 17 C -0.127 4.127 18 C 0.101 3.899 19 H 0.120 0.880 20 C 0.190 3.810 21 N -0.615 5.615 22 C -0.231 4.231 23 H 0.095 0.905 24 C -0.072 4.072 25 N -0.956 5.956 26 Si 0.977 3.023 27 H -0.294 1.294 28 H -0.299 1.299 29 H -0.259 1.259 30 C -0.174 4.174 31 C -0.033 4.033 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.087 0.913 43 H -0.005 1.005 44 H 0.020 0.980 45 H 0.244 0.756 46 H 0.067 0.933 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 -8.116 -22.533 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.143 4.143 5 C -0.082 4.082 6 C -0.100 4.100 7 N -0.073 5.073 8 H 0.310 0.690 9 N -0.106 5.106 10 C -0.188 4.188 11 C 0.391 3.609 12 O -0.457 6.457 13 N -0.331 5.331 14 C -0.011 4.011 15 C 0.026 3.974 16 H 0.154 0.846 17 C -0.166 4.166 18 C -0.002 4.002 19 H 0.138 0.862 20 C 0.064 3.936 21 N -0.339 5.339 22 C -0.360 4.360 23 H 0.113 0.887 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.806 3.194 27 H -0.222 1.222 28 H -0.226 1.226 29 H -0.183 1.183 30 C -0.184 4.184 31 C -0.071 4.071 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.013 0.987 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.560 -8.060 -21.997 24.328 hybrid contribution 0.198 1.447 0.680 1.611 sum -6.362 -6.612 -21.317 23.208 Atomic orbital electron populations 1.21795 0.93800 1.02287 1.02198 1.21254 0.96566 0.99254 0.93783 0.91415 1.21641 0.93514 1.01234 0.97869 1.20464 0.95000 1.03844 0.88857 1.21702 0.84420 1.04976 0.98916 1.43136 1.08971 1.48941 1.06296 0.69030 1.73936 1.23950 1.20062 0.92641 1.21442 0.91716 1.11400 0.94284 1.16969 0.83418 0.76512 0.84043 1.90692 1.23093 1.55009 1.76857 1.49122 1.08546 1.66623 1.08782 1.23029 0.79141 1.00456 0.98482 1.23641 0.97914 0.87063 0.88741 0.84629 1.24119 0.94480 0.95909 1.02105 1.24348 0.99497 0.97036 0.79340 0.86238 1.21392 0.83815 0.92549 0.95819 1.45359 1.02214 1.26593 1.59773 1.19544 0.86886 0.99057 1.30525 0.88687 1.25711 0.99193 0.99675 1.01831 1.70186 1.21961 1.22850 1.45456 0.85063 0.79241 0.78866 0.76221 1.22173 1.22634 1.18302 1.20169 0.97860 1.09006 0.91350 1.19975 0.88242 1.00390 0.98516 0.93646 0.90582 0.92272 0.87943 0.91488 0.88169 0.87059 0.89652 0.93782 0.88102 0.89411 0.98665 0.96216 0.94709 0.91441 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.16 71.98 0.66 -1.50 16 2 C -0.09 -1.61 2.70 -10.60 -0.03 -1.64 16 3 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 4 C -0.10 -1.21 5.19 30.76 0.16 -1.05 16 5 C -0.04 -0.47 6.31 29.99 0.19 -0.28 16 6 C 0.03 0.59 7.12 41.57 0.30 0.89 16 7 N -0.36 -7.67 6.82 -48.17 -0.33 -8.00 16 8 H 0.46 5.67 8.96 -219.80 -1.97 3.70 16 9 N -0.27 -8.43 10.05 -48.62 -0.49 -8.92 16 10 C -0.03 -1.11 6.98 42.14 0.29 -0.82 16 11 C 0.60 26.05 7.90 86.75 0.69 26.73 16 12 O -0.58 -27.45 16.15 -3.93 -0.06 -27.52 16 13 N -0.60 -25.04 2.95 -771.13 -2.27 -27.31 16 14 C 0.11 4.31 4.98 87.16 0.43 4.74 16 15 C 0.13 5.05 5.53 46.93 0.26 5.31 16 16 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 17 C -0.13 -4.31 6.83 33.59 0.23 -4.08 16 18 C 0.10 4.23 5.25 47.06 0.25 4.47 16 19 H 0.12 4.86 8.06 -2.39 -0.02 4.84 16 20 C 0.19 10.06 4.75 87.26 0.41 10.48 16 21 N -0.61 -31.24 3.01 -649.82 -1.95 -33.19 16 22 C -0.23 -12.76 10.36 84.03 0.87 -11.89 16 23 H 0.10 4.84 7.84 -2.91 -0.02 4.82 16 24 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 25 N -0.96 -60.10 10.58 21.65 0.23 -59.87 16 26 Si 0.98 46.55 29.56 68.60 2.03 48.57 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 29 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 30 C -0.17 -5.20 5.99 -20.03 -0.12 -5.32 16 31 C -0.03 -0.90 4.84 29.91 0.14 -0.76 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.65 8.11 -2.39 -0.02 0.63 16 36 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.09 2.76 7.74 -2.39 -0.02 2.74 16 40 H 0.04 1.94 7.94 -2.39 -0.02 1.92 16 41 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.00 -0.30 7.53 -2.39 -0.02 -0.32 16 44 H 0.02 1.15 7.60 -2.39 -0.02 1.13 16 45 H 0.24 15.06 8.31 -92.71 -0.77 14.29 16 46 H 0.07 1.87 8.12 -2.38 -0.02 1.85 16 47 H 0.05 1.63 7.68 -2.39 -0.02 1.61 16 Total: -1.00 -80.66 369.07 1.36 -79.30 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.99 Total: 15.33 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 5.20 Total: 21.61 kcal Atomic # 7 Polarization: -132.49 SS G_CDS: -4.81 Total: -137.30 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.06 Total: -27.52 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -80.66 1.36 -79.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032708756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.200 kcal (2) G-P(sol) polarization free energy of solvation -80.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds