Wall clock time and date at job start Tue Mar 31 2020 17:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.49727 * 2 1 4 4 C 1.53190 * 109.49580 * 239.93989 * 2 1 3 5 5 N 1.46929 * 108.77633 * 185.37822 * 4 2 1 6 6 C 1.34773 * 120.63059 * 233.58313 * 5 4 2 7 7 O 1.21282 * 120.00163 * 354.90121 * 6 5 4 8 8 C 1.50697 * 119.99804 * 174.89575 * 6 5 4 9 9 C 1.52998 * 110.43724 * 70.48788 * 8 6 5 10 10 F 1.39901 * 109.46867 * 306.48141 * 9 8 6 11 11 F 1.39904 * 109.47112 * 66.47895 * 9 8 6 12 12 C 1.54886 * 110.49034 * 307.94471 * 8 6 5 13 13 C 1.55237 * 102.58803 * 279.18990 * 12 8 6 14 14 C 1.54260 * 104.23037 * 322.08025 * 13 12 8 15 15 C 1.53872 * 106.60101 * 23.61111 * 14 13 12 16 16 C 1.46923 * 118.73751 * 53.61050 * 5 4 2 17 17 C 1.53195 * 108.77225 * 306.39079 * 16 5 4 18 18 C 1.53039 * 109.34344 * 54.62212 * 17 16 5 19 19 H 1.08993 * 109.46037 * 178.63341 * 18 17 16 20 20 N 1.46495 * 109.45914 * 58.66696 * 18 17 16 21 21 C 1.36941 * 119.99670 * 85.00581 * 20 18 17 22 22 H 1.07996 * 120.00068 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99887 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00043 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99886 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47033 * 60.00075 * 25 23 21 27 27 H 1.48505 * 109.46762 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47190 * 299.99995 * 25 23 21 29 29 H 1.09007 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46970 * 300.05953 * 1 2 3 31 31 H 1.08998 * 109.47611 * 60.06044 * 1 2 3 32 32 H 1.08998 * 109.59216 * 65.59137 * 4 2 1 33 33 H 1.09006 * 109.70656 * 305.23294 * 4 2 1 34 34 H 1.09002 * 109.47346 * 186.48011 * 9 8 6 35 35 H 1.08998 * 110.75561 * 37.57666 * 12 8 6 36 36 H 1.09001 * 110.76153 * 160.94825 * 12 8 6 37 37 H 1.08999 * 110.46635 * 203.38991 * 13 12 8 38 38 H 1.08995 * 110.58578 * 80.82808 * 13 12 8 39 39 H 1.09004 * 110.03471 * 264.32668 * 14 13 12 40 40 H 1.09003 * 110.07402 * 142.91846 * 14 13 12 41 41 H 1.08996 * 110.03367 * 240.71863 * 15 14 13 42 42 H 1.09000 * 110.07744 * 119.30502 * 15 14 13 43 43 H 1.08993 * 109.58695 * 186.60525 * 16 5 4 44 44 H 1.08997 * 109.70816 * 66.24801 * 16 5 4 45 45 H 1.09002 * 109.49696 * 174.58806 * 17 16 5 46 46 H 1.09007 * 109.49924 * 294.65031 * 17 16 5 47 47 H 0.96998 * 120.00360 * 265.00427 * 20 18 17 48 48 H 0.96995 * 119.99638 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2498 5 7 3.5046 -0.8280 -1.1703 6 6 4.2806 -0.3848 -2.1792 7 8 3.7716 0.0206 -3.2027 8 6 5.7806 -0.3929 -2.0356 9 6 6.3119 -1.8275 -2.0600 10 9 5.6409 -2.5896 -1.0976 11 9 6.0982 -2.3824 -3.3263 12 6 6.2038 0.3196 -0.7271 13 6 6.1412 1.8194 -1.1230 14 6 6.6639 1.8507 -2.5740 15 6 6.4347 0.4441 -3.1543 16 6 4.1059 -1.4255 0.0297 17 6 3.5715 -0.6942 1.2652 18 6 2.0415 -0.7223 1.2485 19 1 1.6594 -0.2236 2.1392 20 7 1.5790 -2.1122 1.2312 21 6 1.4482 -2.8049 2.4053 22 1 1.6863 -2.3266 3.3438 23 6 1.0095 -4.1218 2.3890 24 7 0.7188 -4.7046 1.2452 25 14 0.8316 -5.0668 3.9905 26 1 -0.1454 -4.3740 4.8682 27 1 0.3511 -6.4422 3.7028 28 1 2.1485 -5.1358 4.6734 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5129 -0.8905 32 1 1.7632 -0.1575 -2.1390 33 1 1.6058 -1.7214 -1.3009 34 1 7.3796 -1.8234 -1.8405 35 1 5.5013 0.1001 0.0769 36 1 7.2176 0.0368 -0.4436 37 1 6.7844 2.4124 -0.4729 38 1 5.1152 2.1847 -1.0792 39 1 7.7274 2.0894 -2.5827 40 1 6.1110 2.5889 -3.1550 41 1 7.3870 0.0002 -3.4445 42 1 5.7703 0.4988 -4.0167 43 1 5.1901 -1.3229 -0.0151 44 1 3.8409 -2.4812 0.0869 45 1 3.9346 -1.1889 2.1661 46 1 3.9166 0.3397 1.2537 47 1 1.3655 -2.5419 0.3882 48 1 0.4126 -5.6248 1.2338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036149961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:00 Heat of formation + Delta-G solvation = -103.301310 kcal Electronic energy + Delta-G solvation = -31851.668235 eV Core-core repulsion = 27578.220547 eV Total energy + Delta-G solvation = -4273.447688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.21168 -47.15596 -40.63512 -38.27979 -36.96336 -34.32131 -32.86337 -31.42415 -30.80990 -29.28128 -28.85800 -26.41971 -25.14177 -24.76143 -23.49436 -21.97353 -21.66681 -20.80863 -19.19027 -18.01944 -17.89606 -17.41694 -17.15967 -17.08259 -16.09266 -15.93500 -15.26901 -14.84534 -14.38789 -14.29789 -14.06063 -13.85054 -13.78248 -13.55292 -13.38165 -13.32370 -13.24708 -12.88606 -12.50759 -12.21640 -11.98303 -11.77013 -11.61858 -11.48177 -11.34894 -11.30302 -11.16951 -10.96992 -10.90358 -10.82310 -10.71612 -10.60352 -10.45526 -10.20475 -9.99245 -9.81786 -9.53268 -9.44739 -8.88767 -8.16582 -6.94668 -5.76110 -3.04619 2.64789 3.17932 3.43187 3.48175 3.49263 3.65135 3.95014 3.99656 4.19175 4.56192 4.59319 4.71095 4.86044 4.97240 5.11875 5.19359 5.23729 5.27679 5.35247 5.37848 5.43781 5.58749 5.60776 5.64635 5.69238 5.73972 5.76311 5.85726 5.93639 5.95292 5.98632 6.07792 6.15867 6.18661 6.29346 6.34758 6.45452 6.53576 6.65626 6.75065 6.79029 6.96941 7.03053 7.69785 7.73183 8.34846 8.42160 9.53594 10.10860 10.45749 11.46190 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.004314 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.232547 B = 6489.565624 C = 7057.617399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.589 5.589 6 C 0.528 3.472 7 O -0.542 6.542 8 C -0.136 4.136 9 C 0.271 3.729 10 F -0.183 7.183 11 F -0.198 7.198 12 C -0.135 4.135 13 C -0.121 4.121 14 C -0.120 4.120 15 C -0.104 4.104 16 C 0.088 3.912 17 C -0.159 4.159 18 C 0.180 3.820 19 H 0.049 0.951 20 N -0.718 5.718 21 C -0.238 4.238 22 H 0.068 0.932 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.825 12.488 -5.509 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.082 0.918 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.314 3.686 7 O -0.420 6.420 8 C -0.140 4.140 9 C 0.217 3.783 10 F -0.164 7.164 11 F -0.179 7.179 12 C -0.172 4.172 13 C -0.158 4.158 14 C -0.158 4.158 15 C -0.142 4.142 16 C -0.033 4.033 17 C -0.200 4.200 18 C 0.069 3.931 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.369 4.369 22 H 0.086 0.914 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.486 12.571 -5.886 19.353 hybrid contribution -0.236 -1.018 0.725 1.272 sum 13.250 11.553 -5.161 18.321 Atomic orbital electron populations 1.21664 0.94240 1.03223 1.00364 1.21688 0.96473 0.98691 0.95804 0.91769 1.21664 0.78529 1.01654 0.98454 1.47995 1.07005 1.58764 1.18189 1.19706 0.87674 0.77899 0.83355 1.90636 1.74616 1.48439 1.28313 1.22780 0.95362 0.94863 1.00989 1.21949 0.97184 0.86363 0.72773 1.93079 1.82631 1.78219 1.62481 1.93020 1.96447 1.86927 1.41516 1.23235 1.03145 0.95489 0.95369 1.22385 1.01873 0.95375 0.96192 1.22098 1.01018 0.96635 0.96019 1.22071 1.00549 0.94205 0.97369 1.22894 0.98586 0.98960 0.82891 1.22694 1.00666 0.98450 0.98156 1.20190 0.90835 0.87397 0.94664 0.93282 1.42460 1.78926 1.07688 1.06923 1.19159 1.37326 0.93925 0.86523 0.91361 1.24699 1.02280 0.97175 0.96519 1.69643 1.51547 1.13080 1.23695 0.86322 0.77710 0.79250 0.83188 1.21413 1.21827 1.21391 0.91011 0.92813 0.93829 0.89991 0.90628 0.86482 0.87527 0.89827 0.90899 0.91293 0.91496 0.91352 0.90883 0.88842 0.87891 0.89295 0.90781 0.93474 0.78079 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.05 37.16 0.34 -1.90 16 2 C -0.11 -1.76 2.67 -90.50 -0.24 -2.00 16 3 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 2.09 5.40 -3.71 -0.02 2.07 16 5 N -0.59 -9.81 2.94 -172.77 -0.51 -10.32 16 6 C 0.53 8.57 6.12 -10.99 -0.07 8.51 16 7 O -0.54 -10.34 14.89 5.56 0.08 -10.26 16 8 C -0.14 -1.64 0.37 -154.00 -0.06 -1.70 16 9 C 0.27 3.24 4.16 37.16 0.15 3.39 16 10 F -0.18 -2.68 11.91 2.25 0.03 -2.66 16 11 F -0.20 -2.87 16.88 2.25 0.04 -2.83 16 12 C -0.14 -1.31 4.88 -24.55 -0.12 -1.43 16 13 C -0.12 -1.10 6.62 -24.89 -0.16 -1.27 16 14 C -0.12 -1.06 6.80 -25.62 -0.17 -1.24 16 15 C -0.10 -1.10 5.52 -25.61 -0.14 -1.24 16 16 C 0.09 1.43 3.07 -3.71 -0.01 1.42 16 17 C -0.16 -2.58 5.38 -26.61 -0.14 -2.72 16 18 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -16.65 3.65 -53.39 -0.19 -16.84 16 21 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 25 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.07 1.36 7.54 -51.92 -0.39 0.97 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.44 7.04 -51.93 -0.37 1.08 16 33 H 0.08 1.50 6.65 -51.93 -0.35 1.15 16 34 H 0.12 0.88 8.04 -51.93 -0.42 0.46 16 35 H 0.11 1.18 3.54 -51.93 -0.18 0.99 16 36 H 0.08 0.60 7.99 -51.93 -0.41 0.18 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 42 H 0.09 1.22 6.78 -51.93 -0.35 0.87 16 43 H 0.10 1.41 2.50 -51.93 -0.13 1.28 16 44 H 0.09 1.80 7.19 -51.93 -0.37 1.42 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.05 0.66 7.30 -51.93 -0.38 0.28 16 47 H 0.38 9.67 5.93 -40.82 -0.24 9.43 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -30.97 359.88 -7.85 -38.82 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.35 Total: 10.17 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.07 Total: -1.71 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.02 Total: -53.84 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.06 Total: -5.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.97 -7.85 -38.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036149961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.480 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds