Wall clock time and date at job start Tue Mar 31 2020 17:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.49727 * 2 1 4 4 C 1.53190 * 109.49580 * 239.93989 * 2 1 3 5 5 N 1.46929 * 108.77633 * 185.37822 * 4 2 1 6 6 C 1.34773 * 120.63059 * 233.58313 * 5 4 2 7 7 O 1.21282 * 120.00163 * 354.90121 * 6 5 4 8 8 C 1.50697 * 119.99804 * 174.89575 * 6 5 4 9 9 C 1.52998 * 110.43724 * 70.48788 * 8 6 5 10 10 F 1.39901 * 109.46867 * 306.48141 * 9 8 6 11 11 F 1.39904 * 109.47112 * 66.47895 * 9 8 6 12 12 C 1.54886 * 110.49034 * 307.94471 * 8 6 5 13 13 C 1.55237 * 102.58803 * 279.18990 * 12 8 6 14 14 C 1.54260 * 104.23037 * 322.08025 * 13 12 8 15 15 C 1.53872 * 106.60101 * 23.61111 * 14 13 12 16 16 C 1.46923 * 118.73751 * 53.61050 * 5 4 2 17 17 C 1.53195 * 108.77225 * 306.39079 * 16 5 4 18 18 C 1.53039 * 109.34344 * 54.62212 * 17 16 5 19 19 H 1.08993 * 109.46037 * 178.63341 * 18 17 16 20 20 N 1.46495 * 109.45914 * 58.66696 * 18 17 16 21 21 C 1.36941 * 119.99670 * 85.00581 * 20 18 17 22 22 H 1.07996 * 120.00068 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99887 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00043 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99886 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47033 * 60.00075 * 25 23 21 27 27 H 1.48505 * 109.46762 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47190 * 299.99995 * 25 23 21 29 29 H 1.09007 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46970 * 300.05953 * 1 2 3 31 31 H 1.08998 * 109.47611 * 60.06044 * 1 2 3 32 32 H 1.08998 * 109.59216 * 65.59137 * 4 2 1 33 33 H 1.09006 * 109.70656 * 305.23294 * 4 2 1 34 34 H 1.09002 * 109.47346 * 186.48011 * 9 8 6 35 35 H 1.08998 * 110.75561 * 37.57666 * 12 8 6 36 36 H 1.09001 * 110.76153 * 160.94825 * 12 8 6 37 37 H 1.08999 * 110.46635 * 203.38991 * 13 12 8 38 38 H 1.08995 * 110.58578 * 80.82808 * 13 12 8 39 39 H 1.09004 * 110.03471 * 264.32668 * 14 13 12 40 40 H 1.09003 * 110.07402 * 142.91846 * 14 13 12 41 41 H 1.08996 * 110.03367 * 240.71863 * 15 14 13 42 42 H 1.09000 * 110.07744 * 119.30502 * 15 14 13 43 43 H 1.08993 * 109.58695 * 186.60525 * 16 5 4 44 44 H 1.08997 * 109.70816 * 66.24801 * 16 5 4 45 45 H 1.09002 * 109.49696 * 174.58806 * 17 16 5 46 46 H 1.09007 * 109.49924 * 294.65031 * 17 16 5 47 47 H 0.96998 * 120.00360 * 265.00427 * 20 18 17 48 48 H 0.96995 * 119.99638 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2498 5 7 3.5046 -0.8280 -1.1703 6 6 4.2806 -0.3848 -2.1792 7 8 3.7716 0.0206 -3.2027 8 6 5.7806 -0.3929 -2.0356 9 6 6.3119 -1.8275 -2.0600 10 9 5.6409 -2.5896 -1.0976 11 9 6.0982 -2.3824 -3.3263 12 6 6.2038 0.3196 -0.7271 13 6 6.1412 1.8194 -1.1230 14 6 6.6639 1.8507 -2.5740 15 6 6.4347 0.4441 -3.1543 16 6 4.1059 -1.4255 0.0297 17 6 3.5715 -0.6942 1.2652 18 6 2.0415 -0.7223 1.2485 19 1 1.6594 -0.2236 2.1392 20 7 1.5790 -2.1122 1.2312 21 6 1.4482 -2.8049 2.4053 22 1 1.6863 -2.3266 3.3438 23 6 1.0095 -4.1218 2.3890 24 7 0.7188 -4.7046 1.2452 25 14 0.8316 -5.0668 3.9905 26 1 -0.1454 -4.3740 4.8682 27 1 0.3511 -6.4422 3.7028 28 1 2.1485 -5.1358 4.6734 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5129 -0.8905 32 1 1.7632 -0.1575 -2.1390 33 1 1.6058 -1.7214 -1.3009 34 1 7.3796 -1.8234 -1.8405 35 1 5.5013 0.1001 0.0769 36 1 7.2176 0.0368 -0.4436 37 1 6.7844 2.4124 -0.4729 38 1 5.1152 2.1847 -1.0792 39 1 7.7274 2.0894 -2.5827 40 1 6.1110 2.5889 -3.1550 41 1 7.3870 0.0002 -3.4445 42 1 5.7703 0.4988 -4.0167 43 1 5.1901 -1.3229 -0.0151 44 1 3.8409 -2.4812 0.0869 45 1 3.9346 -1.1889 2.1661 46 1 3.9166 0.3397 1.2537 47 1 1.3655 -2.5419 0.3882 48 1 0.4126 -5.6248 1.2338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036149961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:59 Heat of formation + Delta-G solvation = -121.583195 kcal Electronic energy + Delta-G solvation = -31852.460997 eV Core-core repulsion = 27578.220547 eV Total energy + Delta-G solvation = -4274.240450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.24232 -48.21129 -41.84470 -39.57121 -38.10052 -35.92544 -34.50570 -33.03075 -31.70122 -30.96171 -29.72521 -27.75417 -26.67490 -25.68312 -25.33487 -23.09762 -23.02587 -21.59639 -20.47081 -19.36465 -19.29097 -18.87955 -18.31365 -18.10355 -17.30055 -17.00324 -16.55031 -16.44484 -15.84084 -15.78335 -15.40636 -15.04499 -14.91247 -14.82676 -14.64325 -14.47885 -14.34670 -14.22337 -14.08218 -13.43120 -13.19747 -12.97450 -12.90225 -12.80359 -12.65909 -12.48948 -12.36481 -12.27010 -12.17288 -12.14512 -12.05658 -11.91514 -11.79291 -11.57932 -11.32733 -11.23959 -11.15590 -10.86513 -10.62513 -9.59510 -8.90463 -7.87050 -5.13543 1.41731 1.49648 1.51449 1.57313 1.92480 2.60891 2.73215 3.06430 3.16056 3.23545 3.46737 3.61073 3.84082 3.86911 3.93432 3.98002 4.05131 4.11116 4.22029 4.32716 4.40237 4.41703 4.44451 4.52343 4.53356 4.64835 4.70582 4.74926 4.83099 4.86461 4.98139 5.02865 5.04522 5.08626 5.11928 5.20513 5.25643 5.26581 5.29125 5.38424 5.47651 5.48716 5.61018 5.64811 6.33992 6.42593 7.04875 7.41165 8.18426 8.41276 9.36325 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.004314 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.232547 B = 6489.565624 C = 7057.617399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 H 0.089 0.911 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.519 3.481 7 O -0.578 6.578 8 C -0.136 4.136 9 C 0.258 3.742 10 F -0.203 7.203 11 F -0.217 7.217 12 C -0.131 4.131 13 C -0.119 4.119 14 C -0.116 4.116 15 C -0.103 4.103 16 C 0.098 3.902 17 C -0.150 4.150 18 C 0.172 3.828 19 H 0.049 0.951 20 N -0.725 5.725 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.075 4.075 24 N -0.972 5.972 25 Si 0.965 3.035 26 H -0.281 1.281 27 H -0.304 1.304 28 H -0.278 1.278 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.178 0.822 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.045 0.955 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.138 0.862 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.371 0.629 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.914 14.674 -4.180 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.107 0.893 4 C 0.000 4.000 5 N -0.322 5.322 6 C 0.308 3.692 7 O -0.458 6.458 8 C -0.140 4.140 9 C 0.205 3.795 10 F -0.184 7.184 11 F -0.199 7.199 12 C -0.168 4.168 13 C -0.156 4.156 14 C -0.153 4.153 15 C -0.141 4.141 16 C -0.023 4.023 17 C -0.190 4.190 18 C 0.063 3.937 19 H 0.067 0.933 20 N -0.366 5.366 21 C -0.358 4.358 22 H 0.095 0.905 23 C -0.267 4.267 24 N -0.623 5.623 25 Si 0.796 3.204 26 H -0.207 1.207 27 H -0.231 1.231 28 H -0.204 1.204 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.194 0.806 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.155 0.845 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.204 0.796 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.602 14.809 -4.526 22.703 hybrid contribution -1.208 -1.603 0.229 2.021 sum 15.394 13.206 -4.297 20.733 Atomic orbital electron populations 1.21601 0.94164 1.01370 1.01802 1.21600 0.96486 0.99285 0.94058 0.89324 1.21486 0.79725 0.99841 0.98994 1.48063 1.06513 1.58890 1.18722 1.20576 0.89757 0.76626 0.82286 1.90615 1.75876 1.49843 1.29491 1.22906 0.91783 0.95825 1.03470 1.22712 0.99900 0.85379 0.71488 1.93032 1.83460 1.78719 1.63207 1.92981 1.96720 1.87237 1.42946 1.23300 1.04904 0.95460 0.93138 1.22386 1.01191 0.95208 0.96829 1.22103 1.02743 0.95013 0.95473 1.22107 1.00883 0.95415 0.95690 1.22839 1.00492 0.96230 0.82729 1.22567 0.98273 1.00424 0.97762 1.20457 0.92600 0.85070 0.95582 0.93275 1.42599 1.79114 1.09377 1.05517 1.19558 1.34667 0.93916 0.87682 0.90481 1.25420 1.03633 0.98484 0.99154 1.69822 1.53938 1.12803 1.25749 0.85325 0.77905 0.77288 0.79917 1.20723 1.23058 1.20403 0.94427 0.91870 0.91871 0.90323 0.93968 0.80564 0.88909 0.85767 0.88180 0.93625 0.88441 0.92550 0.87995 0.92146 0.84545 0.93833 0.91390 0.90030 0.79610 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.05 71.98 0.65 -3.65 16 2 C -0.09 -3.09 2.67 -10.72 -0.03 -3.12 16 3 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.12 4.47 5.40 86.36 0.47 4.94 16 5 N -0.59 -19.86 2.94 -818.92 -2.41 -22.26 16 6 C 0.52 16.78 6.12 87.66 0.54 17.32 16 7 O -0.58 -22.62 14.89 -3.04 -0.05 -22.67 16 8 C -0.14 -2.97 0.37 -51.85 -0.02 -2.99 16 9 C 0.26 5.50 4.16 71.98 0.30 5.80 16 10 F -0.20 -5.73 11.91 44.97 0.54 -5.19 16 11 F -0.22 -6.10 16.88 44.97 0.76 -5.34 16 12 C -0.13 -1.98 4.88 32.01 0.16 -1.83 16 13 C -0.12 -1.70 6.62 31.79 0.21 -1.49 16 14 C -0.12 -1.65 6.80 31.32 0.21 -1.43 16 15 C -0.10 -1.92 5.52 31.32 0.17 -1.75 16 16 C 0.10 3.15 3.07 86.36 0.27 3.42 16 17 C -0.15 -4.62 5.38 30.67 0.17 -4.46 16 18 C 0.17 6.31 2.53 45.02 0.11 6.42 16 19 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 20 N -0.73 -34.54 3.65 -322.83 -1.18 -35.71 16 21 C -0.23 -11.98 9.93 84.03 0.83 -11.14 16 22 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 24 N -0.97 -59.53 13.06 21.65 0.28 -59.24 16 25 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 29 H 0.04 1.48 7.54 -2.38 -0.02 1.46 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.89 7.04 -2.39 -0.02 2.87 16 33 H 0.04 1.81 6.65 -2.38 -0.02 1.79 16 34 H 0.18 1.71 8.04 -2.39 -0.02 1.70 16 35 H 0.09 1.69 3.54 -2.39 -0.01 1.68 16 36 H 0.12 0.95 7.99 -2.39 -0.02 0.93 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.30 7.84 -2.39 -0.02 1.28 16 42 H 0.06 1.55 6.78 -2.39 -0.02 1.54 16 43 H 0.14 3.46 2.50 -2.39 -0.01 3.45 16 44 H 0.04 1.82 7.19 -2.39 -0.02 1.80 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.08 2.00 7.30 -2.38 -0.02 1.98 16 47 H 0.37 19.70 5.93 -92.71 -0.55 19.15 16 48 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -72.18 359.88 4.91 -67.27 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.43 Total: 33.10 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 4.50 Total: 2.27 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -3.30 Total: -117.22 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 1.29 Total: -10.53 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.18 4.91 -67.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036149961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.317 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds