Wall clock time and date at job start Tue Mar 31 2020 17:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52626 * 2 1 4 4 C 1.53189 * 109.49961 * 120.08419 * 2 1 3 5 5 N 1.46930 * 108.77733 * 174.58995 * 4 2 1 6 6 C 1.34779 * 120.63378 * 126.41433 * 5 4 2 7 7 O 1.21274 * 119.99564 * 355.20370 * 6 5 4 8 8 C 1.50699 * 119.99664 * 175.20753 * 6 5 4 9 9 C 1.52996 * 110.43925 * 295.20581 * 8 6 5 10 10 F 1.39898 * 109.46793 * 305.77732 * 9 8 6 11 11 F 1.39899 * 109.46884 * 65.77095 * 9 8 6 12 12 C 1.54893 * 110.48346 * 172.51918 * 8 6 5 13 13 C 1.54892 * 102.75351 * 279.26920 * 12 8 6 14 14 C 1.54264 * 104.19086 * 322.05733 * 13 12 8 15 15 C 1.53877 * 106.60428 * 23.60858 * 14 13 12 16 16 C 1.46921 * 118.73395 * 306.38197 * 5 4 2 17 17 C 1.53197 * 108.77526 * 53.61569 * 16 5 4 18 18 C 1.53043 * 109.31021 * 305.36114 * 17 16 5 19 19 H 1.09000 * 109.44492 * 181.37821 * 18 17 16 20 20 N 1.46496 * 109.45896 * 301.34213 * 18 17 16 21 21 C 1.36933 * 120.00318 * 275.06464 * 20 18 17 22 22 H 1.07997 * 119.99879 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00310 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00001 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00229 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47550 * 59.99886 * 25 23 21 27 27 H 1.48497 * 109.47290 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47284 * 299.99978 * 25 23 21 29 29 H 1.09000 * 109.46757 * 180.08369 * 1 2 3 30 30 H 1.09003 * 109.46642 * 300.08080 * 1 2 3 31 31 H 1.09001 * 109.46927 * 60.08063 * 1 2 3 32 32 H 1.09004 * 109.58392 * 294.36782 * 4 2 1 33 33 H 1.08998 * 109.58826 * 54.79483 * 4 2 1 34 34 H 1.08991 * 109.47357 * 185.77355 * 9 8 6 35 35 H 1.09005 * 110.75238 * 37.58189 * 12 8 6 36 36 H 1.09000 * 110.75721 * 160.94824 * 12 8 6 37 37 H 1.08994 * 110.48569 * 203.38211 * 13 12 8 38 38 H 1.08998 * 110.48656 * 80.73140 * 13 12 8 39 39 H 1.09003 * 110.03522 * 264.32531 * 14 13 12 40 40 H 1.09000 * 110.07395 * 142.91848 * 14 13 12 41 41 H 1.08995 * 110.03598 * 240.72089 * 15 14 13 42 42 H 1.08996 * 110.07007 * 119.30433 * 15 14 13 43 43 H 1.08997 * 109.59401 * 293.82798 * 16 5 4 44 44 H 1.09005 * 109.58762 * 173.39365 * 16 5 4 45 45 H 1.08997 * 109.49814 * 185.41182 * 17 16 5 46 46 H 1.09003 * 109.52260 * 65.32980 * 17 16 5 47 47 H 0.97007 * 119.99649 * 95.07140 * 20 18 17 48 48 H 0.96998 * 120.00439 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5047 -0.8291 1.1695 6 6 4.2812 -0.3864 2.1783 7 8 3.7798 0.1827 3.1246 8 6 5.7724 -0.5986 2.1301 9 6 6.1016 -2.0919 2.1824 10 9 5.4905 -2.6650 3.3028 11 9 5.6274 -2.7147 1.0229 12 6 6.4648 0.1531 3.2940 13 6 6.5449 1.6060 2.7630 14 6 6.8592 1.4430 1.2616 15 6 6.3681 0.0414 0.8591 16 6 4.1053 -1.4267 -0.0308 17 6 3.5709 -0.6950 -1.2661 18 6 2.0408 -0.7231 -1.2484 19 1 1.6584 -0.2243 -2.1389 20 7 1.5784 -2.1130 -1.2309 21 6 1.4481 -2.8062 -2.4046 22 1 1.6867 -2.3283 -3.3432 23 6 1.0094 -4.1230 -2.3881 24 7 0.7182 -4.7053 -1.2442 25 14 0.8324 -5.0687 -3.9892 26 1 2.1495 -5.1380 -4.6715 27 1 0.3506 -6.4436 -3.7014 28 1 -0.1443 -4.3763 -4.8677 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.7639 -0.1579 2.1388 33 1 1.6053 -1.7216 1.2980 34 1 7.1813 -2.2238 2.2502 35 1 5.8591 0.1055 4.1991 36 1 7.4622 -0.2480 3.4740 37 1 7.3451 2.1513 3.2633 38 1 5.5911 2.1154 2.9000 39 1 7.9332 1.5247 1.0938 40 1 6.3326 2.2031 0.6845 41 1 7.2036 -0.5572 0.4962 42 1 5.6027 0.1206 0.0871 43 1 3.8376 -2.4818 -0.0868 44 1 5.1896 -1.3246 0.0136 45 1 3.9334 -1.1897 -2.1671 46 1 3.9160 0.3389 -1.2547 47 1 1.3644 -2.5424 -0.3877 48 1 0.4113 -5.6254 -1.2326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036149962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:04 Heat of formation + Delta-G solvation = -108.257867 kcal Electronic energy + Delta-G solvation = -31855.588379 eV Core-core repulsion = 27581.925758 eV Total energy + Delta-G solvation = -4273.662620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.16131 -47.09987 -40.61870 -38.31217 -36.91525 -34.31588 -32.85193 -31.39222 -30.80776 -29.24984 -28.90333 -26.43694 -25.09504 -24.75357 -23.47357 -21.98224 -21.63317 -20.77781 -19.18810 -18.01950 -17.96233 -17.39522 -17.19732 -16.93526 -16.01888 -15.89470 -15.20522 -14.81950 -14.49406 -14.28248 -14.05886 -13.80026 -13.78731 -13.51717 -13.32432 -13.29698 -13.22501 -12.87465 -12.49947 -12.22663 -11.98826 -11.76205 -11.67165 -11.47460 -11.36374 -11.24318 -11.17348 -10.99889 -10.89866 -10.83982 -10.69670 -10.64287 -10.43274 -10.19745 -10.00314 -9.80119 -9.52289 -9.42840 -8.88109 -8.15083 -6.93802 -5.75369 -3.03783 2.66112 3.18227 3.43685 3.48680 3.49651 3.65813 3.95308 4.00582 4.20193 4.58577 4.60046 4.71576 4.87214 4.96913 5.12651 5.19393 5.24423 5.28400 5.36268 5.39840 5.45143 5.59952 5.62391 5.65896 5.67519 5.73207 5.78908 5.87861 5.92447 5.96925 6.00820 6.09281 6.17251 6.17968 6.30131 6.36964 6.46394 6.54791 6.66526 6.76021 6.80765 6.98394 7.04020 7.70531 7.74074 8.35458 8.42874 9.54299 10.11626 10.46652 11.46964 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.004349 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.537056 B = 6437.403758 C = 6978.429620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.064 0.936 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.529 3.471 7 O -0.542 6.542 8 C -0.137 4.137 9 C 0.273 3.727 10 F -0.197 7.197 11 F -0.185 7.185 12 C -0.098 4.098 13 C -0.121 4.121 14 C -0.122 4.122 15 C -0.128 4.128 16 C 0.087 3.913 17 C -0.156 4.156 18 C 0.179 3.821 19 H 0.049 0.951 20 N -0.717 5.717 21 C -0.238 4.238 22 H 0.068 0.932 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.157 11.422 6.521 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.315 3.685 7 O -0.420 6.420 8 C -0.141 4.141 9 C 0.219 3.781 10 F -0.178 7.178 11 F -0.166 7.166 12 C -0.136 4.136 13 C -0.159 4.159 14 C -0.160 4.160 15 C -0.166 4.166 16 C -0.034 4.034 17 C -0.197 4.197 18 C 0.069 3.931 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.369 4.369 22 H 0.086 0.914 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.817 11.594 6.831 19.287 hybrid contribution -0.274 -1.027 -0.826 1.346 sum 13.543 10.567 6.005 18.197 Atomic orbital electron populations 1.21665 0.94261 1.03185 1.00366 1.21687 0.96458 0.98731 0.95797 0.91749 1.21669 0.78489 1.01563 0.98591 1.48036 1.07054 1.59011 1.18085 1.19703 0.87346 0.78911 0.82551 1.90633 1.74674 1.42707 1.34002 1.22818 0.95810 0.94469 1.00994 1.21888 0.96225 0.87936 0.72060 1.93025 1.85920 1.86210 1.52675 1.93070 1.90312 1.84421 1.48767 1.22387 0.99638 0.94813 0.96749 1.22332 1.02337 0.96224 0.94968 1.22141 1.01120 0.96143 0.96560 1.22625 1.01650 0.96744 0.95548 1.22903 0.98562 0.99045 0.82922 1.22645 1.00603 0.98390 0.98086 1.20198 0.90857 0.87388 0.94686 0.93305 1.42455 1.78919 1.07683 1.06922 1.19158 1.37282 0.93918 0.86534 0.91373 1.24692 1.02303 0.97164 0.96520 1.69640 1.51555 1.13105 1.23685 0.86322 0.77706 0.79249 0.83192 1.21391 1.21827 1.21424 0.91031 0.93822 0.92832 0.89902 0.90620 0.86594 0.89220 0.90492 0.91163 0.90768 0.91305 0.91363 0.90069 0.88425 0.89243 0.87999 0.90801 0.93642 0.78090 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.05 37.16 0.34 -1.93 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 2.12 5.43 -3.71 -0.02 2.10 16 5 N -0.59 -9.95 2.96 -172.77 -0.51 -10.47 16 6 C 0.53 8.57 5.92 -10.98 -0.07 8.50 16 7 O -0.54 -10.15 14.78 5.56 0.08 -10.07 16 8 C -0.14 -1.66 0.38 -154.00 -0.06 -1.71 16 9 C 0.27 3.29 4.17 37.16 0.15 3.45 16 10 F -0.20 -2.96 16.87 2.25 0.04 -2.92 16 11 F -0.18 -2.69 12.00 2.25 0.03 -2.66 16 12 C -0.10 -1.01 5.48 -24.74 -0.14 -1.14 16 13 C -0.12 -1.14 6.54 -25.07 -0.16 -1.31 16 14 C -0.12 -1.05 6.80 -25.61 -0.17 -1.22 16 15 C -0.13 -1.27 4.43 -25.61 -0.11 -1.39 16 16 C 0.09 1.44 3.09 -3.71 -0.01 1.43 16 17 C -0.16 -2.61 5.53 -26.61 -0.15 -2.76 16 18 C 0.18 3.40 2.53 -67.89 -0.17 3.23 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -16.80 3.64 -53.39 -0.19 -17.00 16 21 C -0.24 -6.28 9.93 -15.06 -0.15 -6.42 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 25 Si 0.90 22.00 29.55 -169.99 -5.02 16.97 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.07 1.37 7.54 -51.93 -0.39 0.98 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 33 H 0.08 1.51 6.64 -51.93 -0.34 1.16 16 34 H 0.12 0.89 8.06 -51.93 -0.42 0.47 16 35 H 0.09 1.10 7.32 -51.93 -0.38 0.72 16 36 H 0.08 0.58 8.00 -51.93 -0.42 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.86 7.91 -51.93 -0.41 0.45 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.64 7.84 -51.93 -0.41 0.23 16 42 H 0.10 1.12 4.51 -51.93 -0.23 0.88 16 43 H 0.09 1.83 7.02 -51.93 -0.36 1.46 16 44 H 0.10 1.43 2.41 -51.93 -0.13 1.30 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.04 0.66 7.63 -51.93 -0.40 0.27 16 47 H 0.38 9.73 5.92 -40.82 -0.24 9.49 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -30.97 360.66 -7.90 -38.86 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.42 Total: 10.22 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.06 Total: -1.62 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.02 Total: -54.22 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.07 Total: -5.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.97 -7.90 -38.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036149962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.393 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds