Wall clock time and date at job start Tue Mar 31 2020 17:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52626 * 2 1 4 4 C 1.53189 * 109.49961 * 120.08419 * 2 1 3 5 5 N 1.46930 * 108.77733 * 174.58995 * 4 2 1 6 6 C 1.34779 * 120.63378 * 126.41433 * 5 4 2 7 7 O 1.21274 * 119.99564 * 355.20370 * 6 5 4 8 8 C 1.50699 * 119.99664 * 175.20753 * 6 5 4 9 9 C 1.52996 * 110.43925 * 295.20581 * 8 6 5 10 10 F 1.39898 * 109.46793 * 305.77732 * 9 8 6 11 11 F 1.39899 * 109.46884 * 65.77095 * 9 8 6 12 12 C 1.54893 * 110.48346 * 172.51918 * 8 6 5 13 13 C 1.54892 * 102.75351 * 279.26920 * 12 8 6 14 14 C 1.54264 * 104.19086 * 322.05733 * 13 12 8 15 15 C 1.53877 * 106.60428 * 23.60858 * 14 13 12 16 16 C 1.46921 * 118.73395 * 306.38197 * 5 4 2 17 17 C 1.53197 * 108.77526 * 53.61569 * 16 5 4 18 18 C 1.53043 * 109.31021 * 305.36114 * 17 16 5 19 19 H 1.09000 * 109.44492 * 181.37821 * 18 17 16 20 20 N 1.46496 * 109.45896 * 301.34213 * 18 17 16 21 21 C 1.36933 * 120.00318 * 275.06464 * 20 18 17 22 22 H 1.07997 * 119.99879 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00310 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00001 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00229 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47550 * 59.99886 * 25 23 21 27 27 H 1.48497 * 109.47290 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47284 * 299.99978 * 25 23 21 29 29 H 1.09000 * 109.46757 * 180.08369 * 1 2 3 30 30 H 1.09003 * 109.46642 * 300.08080 * 1 2 3 31 31 H 1.09001 * 109.46927 * 60.08063 * 1 2 3 32 32 H 1.09004 * 109.58392 * 294.36782 * 4 2 1 33 33 H 1.08998 * 109.58826 * 54.79483 * 4 2 1 34 34 H 1.08991 * 109.47357 * 185.77355 * 9 8 6 35 35 H 1.09005 * 110.75238 * 37.58189 * 12 8 6 36 36 H 1.09000 * 110.75721 * 160.94824 * 12 8 6 37 37 H 1.08994 * 110.48569 * 203.38211 * 13 12 8 38 38 H 1.08998 * 110.48656 * 80.73140 * 13 12 8 39 39 H 1.09003 * 110.03522 * 264.32531 * 14 13 12 40 40 H 1.09000 * 110.07395 * 142.91848 * 14 13 12 41 41 H 1.08995 * 110.03598 * 240.72089 * 15 14 13 42 42 H 1.08996 * 110.07007 * 119.30433 * 15 14 13 43 43 H 1.08997 * 109.59401 * 293.82798 * 16 5 4 44 44 H 1.09005 * 109.58762 * 173.39365 * 16 5 4 45 45 H 1.08997 * 109.49814 * 185.41182 * 17 16 5 46 46 H 1.09003 * 109.52260 * 65.32980 * 17 16 5 47 47 H 0.97007 * 119.99649 * 95.07140 * 20 18 17 48 48 H 0.96998 * 120.00439 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5047 -0.8291 1.1695 6 6 4.2812 -0.3864 2.1783 7 8 3.7798 0.1827 3.1246 8 6 5.7724 -0.5986 2.1301 9 6 6.1016 -2.0919 2.1824 10 9 5.4905 -2.6650 3.3028 11 9 5.6274 -2.7147 1.0229 12 6 6.4648 0.1531 3.2940 13 6 6.5449 1.6060 2.7630 14 6 6.8592 1.4430 1.2616 15 6 6.3681 0.0414 0.8591 16 6 4.1053 -1.4267 -0.0308 17 6 3.5709 -0.6950 -1.2661 18 6 2.0408 -0.7231 -1.2484 19 1 1.6584 -0.2243 -2.1389 20 7 1.5784 -2.1130 -1.2309 21 6 1.4481 -2.8062 -2.4046 22 1 1.6867 -2.3283 -3.3432 23 6 1.0094 -4.1230 -2.3881 24 7 0.7182 -4.7053 -1.2442 25 14 0.8324 -5.0687 -3.9892 26 1 2.1495 -5.1380 -4.6715 27 1 0.3506 -6.4436 -3.7014 28 1 -0.1443 -4.3763 -4.8677 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.7639 -0.1579 2.1388 33 1 1.6053 -1.7216 1.2980 34 1 7.1813 -2.2238 2.2502 35 1 5.8591 0.1055 4.1991 36 1 7.4622 -0.2480 3.4740 37 1 7.3451 2.1513 3.2633 38 1 5.5911 2.1154 2.9000 39 1 7.9332 1.5247 1.0938 40 1 6.3326 2.2031 0.6845 41 1 7.2036 -0.5572 0.4962 42 1 5.6027 0.1206 0.0871 43 1 3.8376 -2.4818 -0.0868 44 1 5.1896 -1.3246 0.0136 45 1 3.9334 -1.1897 -2.1671 46 1 3.9160 0.3389 -1.2547 47 1 1.3644 -2.5424 -0.3877 48 1 0.4113 -5.6254 -1.2326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036149962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:03 Heat of formation + Delta-G solvation = -126.414081 kcal Electronic energy + Delta-G solvation = -31856.375691 eV Core-core repulsion = 27581.925758 eV Total energy + Delta-G solvation = -4274.449933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.20365 -48.17429 -41.83178 -39.61140 -38.06074 -35.92876 -34.51664 -33.02174 -31.71321 -30.94122 -29.76850 -27.78464 -26.64410 -25.70020 -25.32255 -23.11081 -23.03261 -21.52772 -20.51168 -19.37440 -19.33267 -18.91232 -18.33571 -18.02221 -17.18673 -17.03864 -16.54925 -16.31358 -15.86880 -15.77175 -15.52530 -15.05961 -14.93108 -14.81542 -14.53815 -14.46237 -14.36691 -14.21997 -14.08655 -13.48216 -13.17973 -12.97740 -12.92698 -12.81421 -12.63811 -12.51020 -12.38862 -12.33290 -12.21933 -12.16197 -11.97937 -11.92710 -11.80248 -11.58829 -11.43097 -11.22332 -11.16161 -10.85199 -10.62199 -9.58963 -8.91261 -7.87491 -5.14135 1.42885 1.49258 1.51088 1.56969 1.92392 2.60399 2.73079 3.06624 3.14628 3.24839 3.46106 3.61242 3.83962 3.86266 3.93584 3.98060 4.05807 4.09932 4.21607 4.31617 4.39217 4.44633 4.45097 4.47152 4.52354 4.63783 4.70097 4.73916 4.84226 4.87085 4.96810 5.02580 5.03215 5.06669 5.10735 5.18446 5.23988 5.28097 5.30624 5.34500 5.46622 5.48984 5.60034 5.63152 6.33410 6.42573 7.05212 7.40635 8.17348 8.40776 9.35814 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.004349 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.537056 B = 6437.403758 C = 6978.429620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.595 5.595 6 C 0.520 3.480 7 O -0.573 6.573 8 C -0.137 4.137 9 C 0.260 3.740 10 F -0.220 7.220 11 F -0.203 7.203 12 C -0.095 4.095 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.128 4.128 16 C 0.098 3.902 17 C -0.148 4.148 18 C 0.172 3.828 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.074 4.074 24 N -0.971 5.971 25 Si 0.966 3.034 26 H -0.278 1.278 27 H -0.303 1.303 28 H -0.281 1.281 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.175 0.825 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.135 0.865 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.371 0.629 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.246 13.242 5.581 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.104 0.896 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.309 3.691 7 O -0.453 6.453 8 C -0.141 4.141 9 C 0.207 3.793 10 F -0.201 7.201 11 F -0.184 7.184 12 C -0.133 4.133 13 C -0.158 4.158 14 C -0.153 4.153 15 C -0.166 4.166 16 C -0.023 4.023 17 C -0.189 4.189 18 C 0.063 3.937 19 H 0.066 0.934 20 N -0.365 5.365 21 C -0.360 4.360 22 H 0.094 0.906 23 C -0.266 4.266 24 N -0.622 5.622 25 Si 0.796 3.204 26 H -0.204 1.204 27 H -0.229 1.229 28 H -0.208 1.208 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.192 0.808 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.152 0.848 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.204 0.796 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.932 13.466 5.864 22.415 hybrid contribution -1.245 -1.493 -0.458 1.997 sum 15.687 11.974 5.406 20.461 Atomic orbital electron populations 1.21599 0.94086 1.01403 1.01796 1.21600 0.96563 0.99198 0.94158 0.89580 1.21485 0.79690 0.99817 0.99037 1.48104 1.06576 1.59221 1.18686 1.20557 0.89360 0.77765 0.81431 1.90613 1.75853 1.43988 1.34888 1.22934 0.92516 0.95138 1.03467 1.22644 0.98820 0.87273 0.70588 1.92980 1.86647 1.86596 1.53884 1.93026 1.90843 1.84712 1.49793 1.22457 1.00770 0.95339 0.94743 1.22317 1.01668 0.95589 0.96176 1.22133 1.02901 0.94877 0.95358 1.22687 1.02088 0.98083 0.93695 1.22830 1.00388 0.96353 0.82742 1.22525 0.98371 1.00198 0.97813 1.20447 0.92505 0.85154 0.95590 0.93395 1.42579 1.79099 1.09298 1.05549 1.19546 1.34805 0.93951 0.87653 0.90586 1.25414 1.03561 0.98431 0.99192 1.69817 1.53827 1.12855 1.25722 0.85323 0.77889 0.77319 0.79889 1.20429 1.22947 1.20750 0.94333 0.91814 0.91955 0.90169 0.93789 0.80814 0.91986 0.86642 0.88740 0.93849 0.88262 0.91778 0.86866 0.90057 0.93621 0.84759 0.91480 0.90515 0.79561 0.94470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.05 71.98 0.65 -3.70 16 2 C -0.10 -3.20 2.67 -10.72 -0.03 -3.23 16 3 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.12 4.52 5.43 86.36 0.47 4.99 16 5 N -0.60 -20.22 2.96 -818.90 -2.42 -22.64 16 6 C 0.52 16.75 5.92 87.66 0.52 17.27 16 7 O -0.57 -21.89 14.78 -3.01 -0.04 -21.93 16 8 C -0.14 -3.00 0.38 -51.85 -0.02 -3.02 16 9 C 0.26 5.67 4.17 71.98 0.30 5.97 16 10 F -0.22 -6.49 16.87 44.97 0.76 -5.73 16 11 F -0.20 -5.66 12.00 44.97 0.54 -5.12 16 12 C -0.10 -1.70 5.48 31.89 0.17 -1.53 16 13 C -0.12 -1.92 6.54 31.67 0.21 -1.71 16 14 C -0.12 -1.49 6.80 31.32 0.21 -1.28 16 15 C -0.13 -2.05 4.43 31.32 0.14 -1.91 16 16 C 0.10 3.22 3.09 86.37 0.27 3.49 16 17 C -0.15 -4.78 5.53 30.67 0.17 -4.61 16 18 C 0.17 6.47 2.53 45.02 0.11 6.58 16 19 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 20 N -0.72 -34.86 3.64 -322.82 -1.18 -36.03 16 21 C -0.23 -12.15 9.93 84.03 0.83 -11.32 16 22 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 24 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 25 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 29 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 2.96 7.00 -2.38 -0.02 2.95 16 33 H 0.04 1.89 6.64 -2.39 -0.02 1.87 16 34 H 0.18 1.82 8.06 -2.39 -0.02 1.80 16 35 H 0.06 1.47 7.32 -2.38 -0.02 1.46 16 36 H 0.12 1.18 8.00 -2.39 -0.02 1.16 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 0.96 7.91 -2.39 -0.02 0.94 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.11 1.14 7.84 -2.39 -0.02 1.12 16 42 H 0.08 1.59 4.51 -2.39 -0.01 1.58 16 43 H 0.05 1.92 7.02 -2.39 -0.02 1.91 16 44 H 0.14 3.53 2.41 -2.38 -0.01 3.52 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.08 2.02 7.63 -2.39 -0.02 2.00 16 47 H 0.37 19.83 5.92 -92.70 -0.55 19.28 16 48 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -71.56 360.66 4.87 -66.69 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.43 Total: 33.80 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 4.48 Total: 2.26 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -3.32 Total: -117.92 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 1.30 Total: -10.85 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.56 4.87 -66.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036149962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.727 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds