Wall clock time and date at job start Tue Mar 31 2020 17:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.52894 * 2 1 4 4 C 1.53197 * 109.49616 * 120.08178 * 2 1 3 5 5 N 1.46928 * 108.89305 * 174.65379 * 4 2 1 6 6 C 1.34779 * 120.62822 * 126.34213 * 5 4 2 7 7 O 1.21278 * 119.99836 * 355.48298 * 6 5 4 8 8 C 1.50694 * 119.99806 * 175.48060 * 6 5 4 9 9 C 1.52995 * 110.43928 * 295.36167 * 8 6 5 10 10 F 1.39903 * 109.47234 * 305.77922 * 9 8 6 11 11 F 1.39899 * 109.46884 * 65.77576 * 9 8 6 12 12 C 1.54889 * 110.48461 * 172.81959 * 8 6 5 13 13 C 1.55241 * 102.58845 * 279.18990 * 12 8 6 14 14 C 1.54260 * 104.23146 * 322.08503 * 13 12 8 15 15 C 1.53875 * 106.60035 * 23.61052 * 14 13 12 16 16 C 1.46924 * 118.74023 * 306.31849 * 5 4 2 17 17 C 1.53196 * 108.77283 * 53.61096 * 16 5 4 18 18 C 1.53042 * 109.31455 * 305.36195 * 17 16 5 19 19 H 1.09004 * 109.46089 * 301.34874 * 18 17 16 20 20 N 1.46501 * 109.46164 * 181.37259 * 18 17 16 21 21 C 1.36936 * 119.99620 * 85.00217 * 20 18 17 22 22 H 1.08001 * 120.00299 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99738 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99906 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99909 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46665 * 90.00383 * 25 23 21 27 27 H 1.48501 * 109.47329 * 210.00281 * 25 23 21 28 28 H 1.48497 * 109.47486 * 330.00950 * 25 23 21 29 29 H 1.09000 * 109.47273 * 299.92149 * 1 2 3 30 30 H 1.09005 * 109.46656 * 59.91755 * 1 2 3 31 31 H 1.08997 * 109.47586 * 179.91510 * 1 2 3 32 32 H 1.09006 * 109.58340 * 54.79352 * 4 2 1 33 33 H 1.08992 * 109.58765 * 294.51646 * 4 2 1 34 34 H 1.08994 * 109.47181 * 185.77332 * 9 8 6 35 35 H 1.09003 * 110.75783 * 37.58336 * 12 8 6 36 36 H 1.09004 * 110.75694 * 160.95396 * 12 8 6 37 37 H 1.09001 * 110.46285 * 203.39261 * 13 12 8 38 38 H 1.08996 * 110.46889 * 80.77961 * 13 12 8 39 39 H 1.09007 * 110.02950 * 264.32445 * 14 13 12 40 40 H 1.08995 * 110.03199 * 142.89900 * 14 13 12 41 41 H 1.09003 * 110.03227 * 240.71400 * 15 14 13 42 42 H 1.08993 * 110.07176 * 119.31070 * 15 14 13 43 43 H 1.08999 * 109.58392 * 173.39462 * 16 5 4 44 44 H 1.08997 * 109.58751 * 293.67974 * 16 5 4 45 45 H 1.09002 * 109.50027 * 65.31500 * 17 16 5 46 46 H 1.08997 * 109.49539 * 185.41190 * 17 16 5 47 47 H 0.96995 * 119.99716 * 265.00362 * 20 18 17 48 48 H 0.97002 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5047 -0.8292 1.1731 6 6 4.2789 -0.3854 2.1832 7 8 3.7747 0.1803 3.1301 8 6 5.7708 -0.5921 2.1359 9 6 6.1052 -2.0844 2.1821 10 9 5.4948 -2.6647 3.2992 11 9 5.6347 -2.7039 1.0193 12 6 6.4588 0.1540 3.3059 13 6 6.5348 1.6123 2.7791 14 6 6.8514 1.4571 1.2774 15 6 6.3657 0.0555 0.8683 16 6 4.1082 -1.4280 -0.0252 17 6 3.5766 -0.6975 -1.2625 18 6 2.0465 -0.7256 -1.2484 19 1 1.7024 -1.7599 -1.2350 20 7 1.5349 -0.0564 -2.4470 21 6 1.4063 -0.7540 -3.6183 22 1 1.6823 -1.7974 -3.6586 23 6 0.9221 -0.1198 -4.7542 24 7 0.7979 -0.7904 -5.8799 25 14 0.4454 1.6850 -4.6847 26 1 1.6248 2.5218 -5.0227 27 1 -0.6435 1.9473 -5.6597 28 1 -0.0238 2.0208 -3.3164 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6050 -1.7217 1.2980 33 1 1.7615 -0.1593 2.1390 34 1 7.1854 -2.2127 2.2505 35 1 5.8520 0.0982 4.2097 36 1 7.4574 -0.2449 3.4845 37 1 7.3325 2.1584 3.2828 38 1 5.5791 2.1178 2.9173 39 1 7.9253 1.5433 1.1113 40 1 6.3222 2.2178 0.7036 41 1 7.2038 -0.5385 0.5037 42 1 5.6010 0.1353 0.0958 43 1 5.1924 -1.3257 0.0217 44 1 3.8428 -2.4837 -0.0794 45 1 3.9216 0.3364 -1.2508 46 1 3.9413 -1.1931 -2.1622 47 1 1.2875 0.8807 -2.4109 48 1 0.4592 -0.3473 -6.6735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036149963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:07 Heat of formation + Delta-G solvation = -107.266272 kcal Electronic energy + Delta-G solvation = -31363.529215 eV Core-core repulsion = 27089.909593 eV Total energy + Delta-G solvation = -4273.619621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.43799 -47.36565 -40.79512 -38.36115 -37.07876 -34.81001 -32.96933 -31.58569 -30.99192 -29.81474 -29.10385 -26.69944 -25.27715 -24.94119 -22.89513 -22.07069 -21.41971 -20.90245 -19.92643 -18.62811 -18.16185 -17.59700 -17.50992 -17.22435 -16.20089 -16.09475 -15.40124 -14.94323 -14.73655 -14.37606 -14.21962 -14.07547 -13.87723 -13.72791 -13.52995 -13.51451 -13.21097 -12.99289 -12.50237 -12.44138 -12.21531 -11.96847 -11.86417 -11.74830 -11.61416 -11.43262 -11.32084 -11.18005 -11.04299 -11.01288 -10.79071 -10.71852 -10.58163 -10.33614 -10.21774 -9.77117 -9.67103 -9.58857 -8.92365 -8.49865 -7.27695 -5.79016 -3.14130 2.43838 2.92613 3.35100 3.38476 3.43679 3.43795 3.78206 3.80255 4.02763 4.39638 4.55724 4.57050 4.68889 4.83993 4.99759 5.04688 5.06288 5.08133 5.14512 5.21150 5.30538 5.34061 5.47528 5.52048 5.56960 5.61391 5.65725 5.66887 5.72959 5.83096 5.88749 5.91450 5.97903 6.08173 6.09340 6.16033 6.28783 6.30680 6.41387 6.51695 6.68214 6.79511 6.94977 7.44361 7.97186 8.11513 8.40243 9.18673 9.91495 10.11743 11.39408 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003743 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.176739 B = 7479.784124 C = 7538.484863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.067 0.933 4 C 0.121 3.879 5 N -0.598 5.598 6 C 0.531 3.469 7 O -0.536 6.536 8 C -0.138 4.138 9 C 0.274 3.726 10 F -0.198 7.198 11 F -0.189 7.189 12 C -0.098 4.098 13 C -0.122 4.122 14 C -0.123 4.123 15 C -0.129 4.129 16 C 0.078 3.922 17 C -0.156 4.156 18 C 0.189 3.811 19 H 0.056 0.944 20 N -0.745 5.745 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.345 0.506 18.535 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 H 0.086 0.914 4 C -0.002 4.002 5 N -0.329 5.329 6 C 0.317 3.683 7 O -0.413 6.413 8 C -0.142 4.142 9 C 0.220 3.780 10 F -0.179 7.179 11 F -0.170 7.170 12 C -0.136 4.136 13 C -0.159 4.159 14 C -0.161 4.161 15 C -0.166 4.166 16 C -0.044 4.044 17 C -0.197 4.197 18 C 0.079 3.921 19 H 0.074 0.926 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.007 0.582 18.821 23.469 hybrid contribution -0.481 1.097 -0.359 1.251 sum 13.526 1.679 18.462 22.948 Atomic orbital electron populations 1.21663 0.94143 1.02145 1.01541 1.21824 0.96521 0.99924 0.94944 0.91415 1.21699 0.78419 1.00953 0.99128 1.48073 1.07066 1.59642 1.18136 1.19749 0.87448 0.78657 0.82414 1.90653 1.74539 1.42225 1.33901 1.22841 0.95582 0.94388 1.01366 1.21927 0.96484 0.87883 0.71740 1.93023 1.85964 1.85944 1.52940 1.93021 1.90504 1.84663 1.48798 1.22462 0.99700 0.94940 0.96477 1.22400 1.02447 0.96058 0.95018 1.22141 1.01330 0.96119 0.96478 1.22627 1.01762 0.96887 0.95349 1.23076 1.00026 0.97479 0.83819 1.22741 0.99891 1.00250 0.96849 1.20233 0.90619 0.95983 0.85259 0.92558 1.42773 1.78260 1.10131 1.07555 1.19061 1.36347 0.95781 0.85898 0.89204 1.24645 1.01382 0.97346 0.95618 1.69696 1.52264 1.35633 1.00596 0.86596 0.78213 0.86931 0.77026 1.21207 1.21799 1.20346 0.93586 0.91409 0.92557 0.91356 0.89372 0.86277 0.89201 0.90363 0.91047 0.90762 0.91149 0.91177 0.89902 0.88387 0.87071 0.90873 0.92512 0.90043 0.80685 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.04 37.16 0.34 -1.80 16 2 C -0.11 -1.78 2.47 -90.34 -0.22 -2.00 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.12 1.75 5.71 -3.71 -0.02 1.73 16 5 N -0.60 -8.42 2.96 -172.77 -0.51 -8.93 16 6 C 0.53 7.44 5.92 -10.99 -0.07 7.38 16 7 O -0.54 -8.98 14.77 5.56 0.08 -8.90 16 8 C -0.14 -1.40 0.38 -154.01 -0.06 -1.46 16 9 C 0.27 2.53 4.16 37.16 0.15 2.69 16 10 F -0.20 -2.34 16.87 2.25 0.04 -2.30 16 11 F -0.19 -2.02 11.96 2.25 0.03 -1.99 16 12 C -0.10 -0.87 5.50 -24.55 -0.13 -1.00 16 13 C -0.12 -1.06 6.55 -24.88 -0.16 -1.23 16 14 C -0.12 -1.01 6.80 -25.62 -0.17 -1.19 16 15 C -0.13 -1.14 4.44 -25.61 -0.11 -1.26 16 16 C 0.08 1.04 3.35 -3.71 -0.01 1.03 16 17 C -0.16 -2.52 5.42 -26.61 -0.14 -2.66 16 18 C 0.19 3.46 2.21 -67.72 -0.15 3.31 16 19 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 20 N -0.75 -16.84 4.23 -53.22 -0.22 -17.06 16 21 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 22 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 23 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -28.85 13.97 55.49 0.78 -28.08 16 25 Si 0.88 21.81 27.74 -169.99 -4.71 17.10 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.20 7.39 -51.93 -0.38 0.81 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 34 H 0.12 0.63 8.06 -51.93 -0.42 0.21 16 35 H 0.09 0.96 7.33 -51.93 -0.38 0.58 16 36 H 0.08 0.48 8.00 -51.93 -0.42 0.06 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 39 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 42 H 0.10 1.04 4.53 -51.93 -0.24 0.81 16 43 H 0.11 1.27 2.40 -51.93 -0.12 1.14 16 44 H 0.07 1.00 7.42 -51.93 -0.39 0.62 16 45 H 0.06 0.92 7.62 -51.93 -0.40 0.52 16 46 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.36 8.17 5.38 -40.82 -0.22 7.95 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -32.27 361.53 -7.64 -39.91 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.53 Total: 7.88 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.02 Total: -3.08 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.04 Total: -54.07 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.06 Total: -4.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.27 -7.64 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036149963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.358 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds