Wall clock time and date at job start Tue Mar 31 2020 17:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.52894 * 2 1 4 4 C 1.53197 * 109.49616 * 120.08178 * 2 1 3 5 5 N 1.46928 * 108.89305 * 174.65379 * 4 2 1 6 6 C 1.34779 * 120.62822 * 126.34213 * 5 4 2 7 7 O 1.21278 * 119.99836 * 355.48298 * 6 5 4 8 8 C 1.50694 * 119.99806 * 175.48060 * 6 5 4 9 9 C 1.52995 * 110.43928 * 295.36167 * 8 6 5 10 10 F 1.39903 * 109.47234 * 305.77922 * 9 8 6 11 11 F 1.39899 * 109.46884 * 65.77576 * 9 8 6 12 12 C 1.54889 * 110.48461 * 172.81959 * 8 6 5 13 13 C 1.55241 * 102.58845 * 279.18990 * 12 8 6 14 14 C 1.54260 * 104.23146 * 322.08503 * 13 12 8 15 15 C 1.53875 * 106.60035 * 23.61052 * 14 13 12 16 16 C 1.46924 * 118.74023 * 306.31849 * 5 4 2 17 17 C 1.53196 * 108.77283 * 53.61096 * 16 5 4 18 18 C 1.53042 * 109.31455 * 305.36195 * 17 16 5 19 19 H 1.09004 * 109.46089 * 301.34874 * 18 17 16 20 20 N 1.46501 * 109.46164 * 181.37259 * 18 17 16 21 21 C 1.36936 * 119.99620 * 85.00217 * 20 18 17 22 22 H 1.08001 * 120.00299 * 359.97438 * 21 20 18 23 23 C 1.38814 * 119.99738 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99906 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99909 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46665 * 90.00383 * 25 23 21 27 27 H 1.48501 * 109.47329 * 210.00281 * 25 23 21 28 28 H 1.48497 * 109.47486 * 330.00950 * 25 23 21 29 29 H 1.09000 * 109.47273 * 299.92149 * 1 2 3 30 30 H 1.09005 * 109.46656 * 59.91755 * 1 2 3 31 31 H 1.08997 * 109.47586 * 179.91510 * 1 2 3 32 32 H 1.09006 * 109.58340 * 54.79352 * 4 2 1 33 33 H 1.08992 * 109.58765 * 294.51646 * 4 2 1 34 34 H 1.08994 * 109.47181 * 185.77332 * 9 8 6 35 35 H 1.09003 * 110.75783 * 37.58336 * 12 8 6 36 36 H 1.09004 * 110.75694 * 160.95396 * 12 8 6 37 37 H 1.09001 * 110.46285 * 203.39261 * 13 12 8 38 38 H 1.08996 * 110.46889 * 80.77961 * 13 12 8 39 39 H 1.09007 * 110.02950 * 264.32445 * 14 13 12 40 40 H 1.08995 * 110.03199 * 142.89900 * 14 13 12 41 41 H 1.09003 * 110.03227 * 240.71400 * 15 14 13 42 42 H 1.08993 * 110.07176 * 119.31070 * 15 14 13 43 43 H 1.08999 * 109.58392 * 173.39462 * 16 5 4 44 44 H 1.08997 * 109.58751 * 293.67974 * 16 5 4 45 45 H 1.09002 * 109.50027 * 65.31500 * 17 16 5 46 46 H 1.08997 * 109.49539 * 185.41190 * 17 16 5 47 47 H 0.96995 * 119.99716 * 265.00362 * 20 18 17 48 48 H 0.97002 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0272 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5047 -0.8292 1.1731 6 6 4.2789 -0.3854 2.1832 7 8 3.7747 0.1803 3.1301 8 6 5.7708 -0.5921 2.1359 9 6 6.1052 -2.0844 2.1821 10 9 5.4948 -2.6647 3.2992 11 9 5.6347 -2.7039 1.0193 12 6 6.4588 0.1540 3.3059 13 6 6.5348 1.6123 2.7791 14 6 6.8514 1.4571 1.2774 15 6 6.3657 0.0555 0.8683 16 6 4.1082 -1.4280 -0.0252 17 6 3.5766 -0.6975 -1.2625 18 6 2.0465 -0.7256 -1.2484 19 1 1.7024 -1.7599 -1.2350 20 7 1.5349 -0.0564 -2.4470 21 6 1.4063 -0.7540 -3.6183 22 1 1.6823 -1.7974 -3.6586 23 6 0.9221 -0.1198 -4.7542 24 7 0.7979 -0.7904 -5.8799 25 14 0.4454 1.6850 -4.6847 26 1 1.6248 2.5218 -5.0227 27 1 -0.6435 1.9473 -5.6597 28 1 -0.0238 2.0208 -3.3164 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0276 -0.0015 32 1 1.6050 -1.7217 1.2980 33 1 1.7615 -0.1593 2.1390 34 1 7.1854 -2.2127 2.2505 35 1 5.8520 0.0982 4.2097 36 1 7.4574 -0.2449 3.4845 37 1 7.3325 2.1584 3.2828 38 1 5.5791 2.1178 2.9173 39 1 7.9253 1.5433 1.1113 40 1 6.3222 2.2178 0.7036 41 1 7.2038 -0.5385 0.5037 42 1 5.6010 0.1353 0.0958 43 1 5.1924 -1.3257 0.0217 44 1 3.8428 -2.4837 -0.0794 45 1 3.9216 0.3364 -1.2508 46 1 3.9413 -1.1931 -2.1622 47 1 1.2875 0.8807 -2.4109 48 1 0.4592 -0.3473 -6.6735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036149963.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:06 Heat of formation + Delta-G solvation = -126.980966 kcal Electronic energy + Delta-G solvation = -31364.384108 eV Core-core repulsion = 27089.909593 eV Total energy + Delta-G solvation = -4274.474515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.20758 -48.15915 -41.83525 -39.55709 -38.09714 -36.36187 -34.55025 -33.27627 -31.88042 -31.37226 -29.80958 -27.86364 -26.83985 -25.68635 -24.48175 -23.18689 -22.78702 -21.63225 -21.30503 -19.84911 -19.30738 -19.03626 -18.35017 -18.03519 -17.22473 -17.05647 -16.79737 -16.24003 -16.00929 -15.78763 -15.33240 -15.17685 -15.01606 -14.85421 -14.61657 -14.55273 -14.37888 -14.17612 -14.09056 -13.64696 -13.42409 -13.18302 -12.96242 -12.95184 -12.72427 -12.57577 -12.43847 -12.35443 -12.23739 -12.05389 -12.00210 -11.90678 -11.84805 -11.79773 -11.52208 -11.31284 -11.20767 -10.92191 -10.69015 -9.71525 -9.27110 -8.00553 -5.32657 1.37277 1.38708 1.39865 1.46328 1.86502 2.48565 2.70636 3.04262 3.13885 3.20819 3.31342 3.51354 3.58770 3.76468 3.91208 3.96319 3.97665 4.02139 4.18804 4.25194 4.32285 4.38864 4.41983 4.44397 4.45775 4.60939 4.66688 4.68768 4.75815 4.82340 4.86464 4.92206 4.96495 4.99868 5.03759 5.11443 5.21030 5.21810 5.27020 5.32992 5.42970 5.45706 5.56982 5.79348 6.23419 6.32945 7.01491 7.09281 7.85601 8.04958 9.21145 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.003743 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.176739 B = 7479.784124 C = 7538.484863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 H 0.063 0.937 4 C 0.124 3.876 5 N -0.602 5.602 6 C 0.523 3.477 7 O -0.569 6.569 8 C -0.138 4.138 9 C 0.267 3.733 10 F -0.215 7.215 11 F -0.199 7.199 12 C -0.094 4.094 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.129 4.129 16 C 0.089 3.911 17 C -0.147 4.147 18 C 0.183 3.817 19 H 0.043 0.957 20 N -0.746 5.746 21 C -0.220 4.220 22 H 0.059 0.941 23 C -0.060 4.060 24 N -0.984 5.984 25 Si 0.947 3.053 26 H -0.280 1.280 27 H -0.299 1.299 28 H -0.255 1.255 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.174 0.826 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.139 0.861 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.362 0.638 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.764 1.218 20.290 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.001 3.999 5 N -0.333 5.333 6 C 0.311 3.689 7 O -0.448 6.448 8 C -0.142 4.142 9 C 0.213 3.787 10 F -0.196 7.196 11 F -0.180 7.180 12 C -0.132 4.132 13 C -0.159 4.159 14 C -0.157 4.157 15 C -0.166 4.166 16 C -0.033 4.033 17 C -0.187 4.187 18 C 0.075 3.925 19 H 0.061 0.939 20 N -0.389 5.389 21 C -0.351 4.351 22 H 0.077 0.923 23 C -0.251 4.251 24 N -0.635 5.635 25 Si 0.775 3.225 26 H -0.207 1.207 27 H -0.226 1.226 28 H -0.180 1.180 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.191 0.809 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.095 0.905 43 H 0.156 0.844 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.196 0.804 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.448 1.291 20.635 26.420 hybrid contribution -1.231 0.813 -0.819 1.687 sum 15.217 2.103 19.816 25.073 Atomic orbital electron populations 1.21631 0.93745 1.02240 1.01598 1.21686 0.96825 0.99377 0.94164 0.91821 1.21597 0.79254 1.01032 0.98032 1.48159 1.06872 1.59739 1.18549 1.20532 0.89289 0.77525 0.81533 1.90636 1.75645 1.43512 1.35026 1.22934 0.92535 0.95798 1.02920 1.22502 0.98920 0.86562 0.70673 1.92991 1.86585 1.86154 1.53913 1.92980 1.90917 1.84701 1.49411 1.22512 1.01046 0.94840 0.94777 1.22379 1.01510 0.96127 0.95894 1.22140 1.02813 0.95213 0.95555 1.22671 1.02202 0.97815 0.93952 1.23097 1.01432 0.96615 0.82116 1.22552 0.97815 1.00606 0.97764 1.20449 0.92119 0.95200 0.84778 0.93905 1.42757 1.78590 1.10092 1.07436 1.18998 1.34089 0.94662 0.87349 0.92263 1.25368 1.02559 1.01890 0.95320 1.69868 1.54512 1.37655 1.01465 0.85527 0.77647 0.81491 0.77789 1.20686 1.22564 1.18025 0.91271 0.93528 0.92481 0.90710 0.89612 0.80897 0.91560 0.86481 0.88931 0.94047 0.88390 0.92660 0.86519 0.90470 0.84356 0.91088 0.92387 0.91662 0.80447 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.04 71.98 0.65 -3.42 16 2 C -0.10 -3.13 2.47 -10.61 -0.03 -3.16 16 3 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.12 3.53 5.71 86.36 0.49 4.02 16 5 N -0.60 -16.41 2.96 -818.90 -2.42 -18.84 16 6 C 0.52 14.10 5.92 87.65 0.52 14.62 16 7 O -0.57 -18.99 14.77 -3.02 -0.04 -19.04 16 8 C -0.14 -2.44 0.38 -51.86 -0.02 -2.46 16 9 C 0.27 3.99 4.16 71.98 0.30 4.29 16 10 F -0.22 -4.61 16.87 44.97 0.76 -3.85 16 11 F -0.20 -3.67 11.96 44.97 0.54 -3.13 16 12 C -0.09 -1.39 5.50 32.01 0.18 -1.22 16 13 C -0.12 -1.85 6.55 31.79 0.21 -1.64 16 14 C -0.12 -1.60 6.80 31.32 0.21 -1.38 16 15 C -0.13 -1.85 4.44 31.32 0.14 -1.71 16 16 C 0.09 2.27 3.35 86.36 0.29 2.56 16 17 C -0.15 -4.67 5.42 30.67 0.17 -4.50 16 18 C 0.18 6.70 2.21 45.12 0.10 6.80 16 19 H 0.04 1.69 8.08 -2.38 -0.02 1.67 16 20 N -0.75 -33.77 4.23 -322.30 -1.36 -35.14 16 21 C -0.22 -12.18 10.41 84.03 0.87 -11.31 16 22 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 23 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 24 N -0.98 -62.50 13.97 21.65 0.30 -62.19 16 25 Si 0.95 45.39 27.74 68.60 1.90 47.29 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 27 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 28 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.61 7.39 -2.38 -0.02 1.59 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.09 2.53 7.00 -2.39 -0.02 2.51 16 34 H 0.17 0.81 8.06 -2.39 -0.02 0.79 16 35 H 0.07 1.33 7.33 -2.39 -0.02 1.31 16 36 H 0.12 0.84 8.00 -2.39 -0.02 0.82 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.04 0.89 7.90 -2.39 -0.02 0.87 16 39 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.12 0.92 7.84 -2.39 -0.02 0.90 16 42 H 0.08 1.46 4.53 -2.39 -0.01 1.45 16 43 H 0.14 2.83 2.40 -2.39 -0.01 2.83 16 44 H 0.07 1.87 7.42 -2.39 -0.02 1.86 16 45 H 0.06 1.83 7.62 -2.39 -0.02 1.81 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.36 16.13 5.38 -92.71 -0.50 15.63 16 48 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -73.07 361.53 4.63 -68.44 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.41 Total: 27.98 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 4.55 Total: -1.53 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.48 Total: -116.17 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.04 Total: -19.04 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 1.30 Total: -6.98 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -73.07 4.63 -68.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036149963.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.542 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds