Wall clock time and date at job start Tue Mar 31 2020 17:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49795 * 2 1 4 4 C 1.53634 * 109.45298 * 120.20314 * 2 1 3 5 5 N 1.46927 * 108.53897 * 174.73991 * 4 2 1 6 6 C 1.34779 * 120.62772 * 126.37198 * 5 4 2 7 7 O 1.21476 * 119.99828 * 0.43013 * 6 5 4 8 8 C 1.48461 * 119.99488 * 180.43628 * 6 5 4 9 9 C 1.39537 * 120.54522 * 158.21111 * 8 6 5 10 10 C 1.38763 * 118.25813 * 179.97438 * 9 8 6 11 11 N 1.32195 * 119.15181 * 359.97438 * 10 9 8 12 12 C 1.31883 * 121.03496 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.04072 * 179.97438 * 12 11 10 14 14 C 1.52994 * 117.49731 * 351.25471 * 13 12 11 15 15 C 1.53003 * 117.49689 * 59.91469 * 13 12 11 16 16 N 1.31575 * 121.91829 * 0.27373 * 12 11 10 17 17 C 1.46931 * 118.73947 * 306.09774 * 5 4 2 18 18 C 1.53190 * 108.77747 * 53.85928 * 17 5 4 19 19 C 1.53036 * 109.49951 * 239.93056 * 2 1 3 20 20 H 1.09002 * 109.45843 * 298.67734 * 19 2 1 21 21 N 1.46499 * 109.45999 * 58.63339 * 19 2 1 22 22 C 1.36942 * 119.99981 * 205.06973 * 21 19 2 23 23 H 1.07994 * 119.99871 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99386 * 180.02562 * 22 21 19 25 25 N 1.31611 * 120.00485 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99386 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47323 * 89.99772 * 26 24 22 28 28 H 1.48497 * 109.46836 * 209.99963 * 26 24 22 29 29 H 1.48502 * 109.46974 * 329.99497 * 26 24 22 30 30 H 1.08994 * 109.47791 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47385 * 300.06889 * 1 2 3 32 32 H 1.09003 * 109.46740 * 60.06603 * 1 2 3 33 33 H 1.09001 * 109.73639 * 55.00672 * 4 2 1 34 34 H 1.08993 * 109.66492 * 294.43494 * 4 2 1 35 35 H 1.07998 * 120.87056 * 0.02562 * 9 8 6 36 36 H 1.08005 * 120.42164 * 180.02562 * 10 9 8 37 37 H 1.08996 * 115.54682 * 205.58350 * 13 12 11 38 38 H 1.09004 * 117.50038 * 214.99915 * 14 13 12 39 39 H 1.09004 * 117.50485 * 0.02562 * 14 13 12 40 40 H 1.08998 * 117.49435 * 359.97337 * 15 13 12 41 41 H 1.08996 * 117.49664 * 144.97312 * 15 13 12 42 42 H 1.09002 * 109.58119 * 173.64972 * 17 5 4 43 43 H 1.08997 * 109.58079 * 294.07106 * 17 5 4 44 44 H 1.08994 * 109.49673 * 65.31885 * 18 17 5 45 45 H 1.08992 * 109.49499 * 185.41481 * 18 17 5 46 46 H 0.97005 * 119.99986 * 25.06754 * 21 19 2 47 47 H 0.97002 * 120.00081 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7288 1.2520 5 7 3.5052 -0.8283 1.1692 6 6 4.2817 -0.3853 2.1778 7 8 3.7724 0.0947 3.1706 8 6 5.7595 -0.4840 2.0751 9 6 6.5805 0.3394 2.8466 10 6 7.9553 0.2067 2.7133 11 7 8.4370 -0.6879 1.8676 12 6 7.6324 -1.4505 1.1533 13 6 8.2300 -2.4553 0.2023 14 6 9.7406 -2.3941 -0.0326 15 6 9.1398 -3.5338 0.7940 16 7 6.3231 -1.3557 1.2425 17 6 4.1059 -1.4256 -0.0314 18 6 3.5708 -0.6941 -1.2665 19 6 2.0408 -0.7228 -1.2484 20 1 1.6971 -1.7571 -1.2353 21 7 1.5260 -0.0529 -2.4452 22 6 1.3946 -0.7496 -3.6168 23 1 1.6709 -1.7927 -3.6586 24 6 0.9072 -0.1145 -4.7509 25 7 0.5710 1.1569 -4.7001 26 14 0.7273 -1.0651 -6.3490 27 1 -0.6249 -1.6753 -6.4124 28 1 0.9079 -0.1412 -7.4974 29 1 1.7562 -2.1344 -6.4074 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6094 -1.7283 1.2985 34 1 1.7634 -0.1663 2.1432 35 1 6.1569 1.0603 3.5301 36 1 8.6233 0.8259 3.2938 37 1 7.6003 -2.7357 -0.6421 38 1 10.1048 -2.6343 -1.0315 39 1 10.3023 -1.6274 0.5010 40 1 9.3064 -3.5162 1.8710 41 1 9.1083 -4.5239 0.3392 42 1 5.1901 -1.3230 0.0130 43 1 3.8385 -2.4808 -0.0873 44 1 3.9154 0.3399 -1.2546 45 1 3.9334 -1.1886 -2.1676 46 1 1.2781 0.8842 -2.4078 47 1 0.2301 1.6005 -5.4925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036206922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:28 Heat of formation + Delta-G solvation = 68.229185 kcal Electronic energy + Delta-G solvation = -28525.499967 eV Core-core repulsion = 24710.179586 eV Total energy + Delta-G solvation = -3815.320381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71474 -39.87277 -37.78786 -37.21631 -34.92564 -34.07142 -32.66164 -32.08352 -31.43983 -29.32730 -27.10754 -25.66864 -25.38965 -24.55906 -22.80659 -22.62009 -22.05405 -21.58441 -20.04020 -19.24682 -18.26089 -17.46167 -17.06715 -16.31242 -15.99266 -15.78475 -15.56730 -15.01375 -14.85371 -14.56512 -14.37741 -14.04925 -13.77499 -13.65248 -13.30803 -13.01713 -12.61039 -12.45584 -12.19968 -11.86163 -11.82284 -11.60890 -11.24612 -11.20042 -11.16693 -10.98953 -10.90081 -10.81074 -10.77476 -10.53265 -10.45093 -10.36807 -10.19710 -9.75997 -9.64433 -9.61827 -9.19027 -8.80137 -8.51596 -6.95084 -5.77503 -3.05891 0.25937 0.56107 2.54460 2.80064 3.25267 3.39862 3.42312 3.47601 3.49105 3.59353 3.88240 4.16793 4.46937 4.55455 4.57660 4.64232 4.70822 4.82408 5.08421 5.18656 5.22464 5.30754 5.36360 5.38351 5.48427 5.55453 5.59535 5.69581 5.72294 5.79700 5.82614 5.89525 5.93941 6.06373 6.08508 6.28531 6.37224 6.40871 6.44322 6.54273 6.55535 6.66277 6.83903 6.92415 7.07722 7.39183 7.65069 7.68991 8.00830 8.40825 9.52219 10.09930 10.44945 11.45114 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003350 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.455824 B = 8356.795023 C =10067.750189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.069 0.931 4 C 0.117 3.883 5 N -0.577 5.577 6 C 0.565 3.435 7 O -0.536 6.536 8 C 0.145 3.855 9 C -0.180 4.180 10 C 0.155 3.845 11 N -0.506 5.506 12 C 0.345 3.655 13 C -0.106 4.106 14 C -0.152 4.152 15 C -0.154 4.154 16 N -0.478 5.478 17 C 0.074 3.926 18 C -0.151 4.151 19 C 0.182 3.818 20 H 0.048 0.952 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.132 0.868 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.003 -5.485 15.311 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.006 4.006 5 N -0.306 5.306 6 C 0.350 3.650 7 O -0.413 6.413 8 C -0.002 4.002 9 C -0.203 4.203 10 C -0.012 4.012 11 N -0.220 5.220 12 C 0.079 3.921 13 C -0.126 4.126 14 C -0.189 4.189 15 C -0.192 4.192 16 N -0.195 5.195 17 C -0.048 4.048 18 C -0.192 4.192 19 C 0.072 3.928 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.177 0.823 36 H 0.195 0.805 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.028 -5.998 15.046 22.787 hybrid contribution -0.676 0.534 -0.498 0.996 sum 15.351 -5.464 14.547 21.844 Atomic orbital electron populations 1.21658 0.93995 1.01821 1.01890 1.21821 0.96640 0.99938 0.94504 0.91253 1.21943 0.77839 1.01199 0.99583 1.48084 1.07098 1.57565 1.17900 1.17796 0.84534 0.79016 0.83612 1.90773 1.73573 1.46129 1.30855 1.21714 0.95419 0.91806 0.91272 1.22927 0.95272 1.01220 1.00896 1.23327 0.93079 0.92662 0.92123 1.68042 1.41171 1.05931 1.06861 1.22297 0.85185 0.92268 0.92318 1.20700 0.94046 0.98239 0.99567 1.23048 0.92906 1.01234 1.01758 1.23000 1.01650 0.94208 1.00358 1.68216 1.12887 1.20656 1.17694 1.22973 1.02087 0.96752 0.83011 1.22689 1.00010 1.00172 0.96349 1.20232 0.90611 0.95636 0.86304 0.93400 1.42411 1.76542 1.11363 1.05806 1.19224 1.35767 0.94087 0.87726 0.91233 1.24717 1.02140 0.95993 0.98017 1.69656 1.50085 1.09482 1.28903 0.86228 0.77788 0.78691 0.83716 1.21775 1.21861 1.20795 0.92998 0.93791 0.90686 0.91049 0.89225 0.82251 0.80535 0.84821 0.87956 0.87218 0.88623 0.87734 0.85178 0.91530 0.92728 0.90636 0.78281 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.03 37.16 0.34 -1.88 16 2 C -0.11 -1.83 2.47 -90.27 -0.22 -2.05 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.73 5.75 -3.48 -0.02 1.71 16 5 N -0.58 -8.71 2.97 -173.38 -0.51 -9.23 16 6 C 0.57 8.64 7.64 -12.05 -0.09 8.55 16 7 O -0.54 -9.17 16.04 5.39 0.09 -9.08 16 8 C 0.15 1.92 6.49 -82.63 -0.54 1.38 16 9 C -0.18 -1.89 9.72 -38.90 -0.38 -2.27 16 10 C 0.16 1.36 11.31 -17.20 -0.19 1.17 16 11 N -0.51 -5.33 9.33 -10.74 -0.10 -5.43 16 12 C 0.35 3.95 7.31 -157.30 -1.15 2.80 16 13 C -0.11 -0.98 6.23 -91.77 -0.57 -1.55 16 14 C -0.15 -1.14 10.01 -26.70 -0.27 -1.41 16 15 C -0.15 -1.14 10.24 -26.69 -0.27 -1.41 16 16 N -0.48 -6.12 6.42 -7.32 -0.05 -6.16 16 17 C 0.07 1.09 6.03 -3.71 -0.02 1.07 16 18 C -0.15 -2.66 5.66 -26.61 -0.15 -2.81 16 19 C 0.18 3.52 2.19 -67.89 -0.15 3.37 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -17.45 4.41 -53.39 -0.24 -17.68 16 22 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 26 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.44 7.36 -51.93 -0.38 1.05 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.34 7.01 -51.93 -0.36 0.97 16 35 H 0.16 1.44 7.88 -52.49 -0.41 1.03 16 36 H 0.18 0.85 8.06 -52.48 -0.42 0.42 16 37 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.11 0.88 7.54 -51.93 -0.39 0.49 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.13 1.86 3.96 -77.25 -0.31 1.55 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.38 10.01 7.50 -40.82 -0.31 9.70 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -31.66 381.68 -10.50 -42.16 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.20 Total: 9.97 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.94 Total: -0.31 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -0.17 Total: -65.55 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.66 -10.50 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036206922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.391 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds