Wall clock time and date at job start Tue Mar 31 2020 17:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49795 * 2 1 4 4 C 1.53634 * 109.45298 * 120.20314 * 2 1 3 5 5 N 1.46927 * 108.53897 * 174.73991 * 4 2 1 6 6 C 1.34779 * 120.62772 * 126.37198 * 5 4 2 7 7 O 1.21476 * 119.99828 * 0.43013 * 6 5 4 8 8 C 1.48461 * 119.99488 * 180.43628 * 6 5 4 9 9 C 1.39537 * 120.54522 * 158.21111 * 8 6 5 10 10 C 1.38763 * 118.25813 * 179.97438 * 9 8 6 11 11 N 1.32195 * 119.15181 * 359.97438 * 10 9 8 12 12 C 1.31883 * 121.03496 * 0.02562 * 11 10 9 13 13 C 1.50709 * 119.04072 * 179.97438 * 12 11 10 14 14 C 1.52994 * 117.49731 * 351.25471 * 13 12 11 15 15 C 1.53003 * 117.49689 * 59.91469 * 13 12 11 16 16 N 1.31575 * 121.91829 * 0.27373 * 12 11 10 17 17 C 1.46931 * 118.73947 * 306.09774 * 5 4 2 18 18 C 1.53190 * 108.77747 * 53.85928 * 17 5 4 19 19 C 1.53036 * 109.49951 * 239.93056 * 2 1 3 20 20 H 1.09002 * 109.45843 * 298.67734 * 19 2 1 21 21 N 1.46499 * 109.45999 * 58.63339 * 19 2 1 22 22 C 1.36942 * 119.99981 * 205.06973 * 21 19 2 23 23 H 1.07994 * 119.99871 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99386 * 180.02562 * 22 21 19 25 25 N 1.31611 * 120.00485 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99386 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47323 * 89.99772 * 26 24 22 28 28 H 1.48497 * 109.46836 * 209.99963 * 26 24 22 29 29 H 1.48502 * 109.46974 * 329.99497 * 26 24 22 30 30 H 1.08994 * 109.47791 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47385 * 300.06889 * 1 2 3 32 32 H 1.09003 * 109.46740 * 60.06603 * 1 2 3 33 33 H 1.09001 * 109.73639 * 55.00672 * 4 2 1 34 34 H 1.08993 * 109.66492 * 294.43494 * 4 2 1 35 35 H 1.07998 * 120.87056 * 0.02562 * 9 8 6 36 36 H 1.08005 * 120.42164 * 180.02562 * 10 9 8 37 37 H 1.08996 * 115.54682 * 205.58350 * 13 12 11 38 38 H 1.09004 * 117.50038 * 214.99915 * 14 13 12 39 39 H 1.09004 * 117.50485 * 0.02562 * 14 13 12 40 40 H 1.08998 * 117.49435 * 359.97337 * 15 13 12 41 41 H 1.08996 * 117.49664 * 144.97312 * 15 13 12 42 42 H 1.09002 * 109.58119 * 173.64972 * 17 5 4 43 43 H 1.08997 * 109.58079 * 294.07106 * 17 5 4 44 44 H 1.08994 * 109.49673 * 65.31885 * 18 17 5 45 45 H 1.08992 * 109.49499 * 185.41481 * 18 17 5 46 46 H 0.97005 * 119.99986 * 25.06754 * 21 19 2 47 47 H 0.97002 * 120.00081 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7288 1.2520 5 7 3.5052 -0.8283 1.1692 6 6 4.2817 -0.3853 2.1778 7 8 3.7724 0.0947 3.1706 8 6 5.7595 -0.4840 2.0751 9 6 6.5805 0.3394 2.8466 10 6 7.9553 0.2067 2.7133 11 7 8.4370 -0.6879 1.8676 12 6 7.6324 -1.4505 1.1533 13 6 8.2300 -2.4553 0.2023 14 6 9.7406 -2.3941 -0.0326 15 6 9.1398 -3.5338 0.7940 16 7 6.3231 -1.3557 1.2425 17 6 4.1059 -1.4256 -0.0314 18 6 3.5708 -0.6941 -1.2665 19 6 2.0408 -0.7228 -1.2484 20 1 1.6971 -1.7571 -1.2353 21 7 1.5260 -0.0529 -2.4452 22 6 1.3946 -0.7496 -3.6168 23 1 1.6709 -1.7927 -3.6586 24 6 0.9072 -0.1145 -4.7509 25 7 0.5710 1.1569 -4.7001 26 14 0.7273 -1.0651 -6.3490 27 1 -0.6249 -1.6753 -6.4124 28 1 0.9079 -0.1412 -7.4974 29 1 1.7562 -2.1344 -6.4074 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6094 -1.7283 1.2985 34 1 1.7634 -0.1663 2.1432 35 1 6.1569 1.0603 3.5301 36 1 8.6233 0.8259 3.2938 37 1 7.6003 -2.7357 -0.6421 38 1 10.1048 -2.6343 -1.0315 39 1 10.3023 -1.6274 0.5010 40 1 9.3064 -3.5162 1.8710 41 1 9.1083 -4.5239 0.3392 42 1 5.1901 -1.3230 0.0130 43 1 3.8385 -2.4808 -0.0873 44 1 3.9154 0.3399 -1.2546 45 1 3.9334 -1.1886 -2.1676 46 1 1.2781 0.8842 -2.4078 47 1 0.2301 1.6005 -5.4925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036206922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:27 Heat of formation + Delta-G solvation = 50.295015 kcal Electronic energy + Delta-G solvation = -28526.277651 eV Core-core repulsion = 24710.179586 eV Total energy + Delta-G solvation = -3816.098065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.60242 -41.04277 -39.13426 -37.91633 -36.35602 -35.25380 -34.16217 -33.08403 -32.87255 -31.08224 -28.26827 -27.06845 -26.18384 -25.98272 -24.31864 -23.20255 -23.17810 -22.83287 -21.28984 -20.48689 -19.23531 -19.02737 -18.39849 -17.42740 -16.90123 -16.76056 -16.69653 -16.51240 -15.87801 -15.73162 -15.52323 -15.31348 -15.16989 -14.90944 -14.83751 -14.34790 -14.02419 -13.71074 -13.38418 -13.09547 -12.93830 -12.86355 -12.76238 -12.50933 -12.38874 -12.20966 -12.14800 -11.99890 -11.91080 -11.87649 -11.79651 -11.64799 -11.55888 -11.35306 -11.19113 -10.91744 -10.40887 -10.04788 -9.77958 -8.95784 -7.91715 -5.19483 -0.65048 -0.21164 1.47373 1.48389 1.49219 1.57396 1.69945 2.44773 2.53657 2.58297 2.84610 3.12404 3.28218 3.41847 3.63667 3.75523 3.78284 3.88465 3.93980 4.01363 4.11993 4.13260 4.16702 4.33508 4.34766 4.42569 4.49400 4.55303 4.68790 4.73812 4.80701 4.82607 4.88622 4.98369 4.99657 5.01257 5.12527 5.19190 5.24466 5.31949 5.34984 5.43320 5.46091 5.54030 5.61466 5.71164 6.18978 6.29681 6.74494 6.90497 7.36175 8.11466 8.35525 9.31890 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003350 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.455824 B = 8356.795023 C =10067.750189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 H 0.053 0.947 4 C 0.123 3.877 5 N -0.581 5.581 6 C 0.564 3.436 7 O -0.558 6.558 8 C 0.119 3.881 9 C -0.178 4.178 10 C 0.168 3.832 11 N -0.510 5.510 12 C 0.336 3.664 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.143 4.143 16 N -0.495 5.495 17 C 0.087 3.913 18 C -0.139 4.139 19 C 0.179 3.821 20 H 0.048 0.952 21 N -0.731 5.731 22 C -0.232 4.232 23 H 0.077 0.923 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.289 1.289 28 H -0.299 1.299 29 H -0.268 1.268 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.172 0.828 36 H 0.221 0.779 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.370 0.630 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.881 -6.845 16.461 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.119 4.119 3 H 0.072 0.928 4 C 0.001 3.999 5 N -0.311 5.311 6 C 0.351 3.649 7 O -0.437 6.437 8 C -0.027 4.027 9 C -0.201 4.201 10 C 0.000 4.000 11 N -0.224 5.224 12 C 0.071 3.929 13 C -0.147 4.147 14 C -0.180 4.180 15 C -0.181 4.181 16 N -0.212 5.212 17 C -0.036 4.036 18 C -0.180 4.180 19 C 0.070 3.930 20 H 0.066 0.934 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.094 0.906 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.216 1.216 28 H -0.226 1.226 29 H -0.193 1.193 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.190 0.810 36 H 0.238 0.762 37 H 0.151 0.849 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.202 0.798 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 17.928 -7.406 16.225 25.288 hybrid contribution -1.171 0.964 -0.747 1.691 sum 16.756 -6.442 15.478 23.703 Atomic orbital electron populations 1.21570 0.93535 1.02160 1.01405 1.21683 0.96962 0.98970 0.94303 0.92817 1.21874 0.78034 1.01807 0.98230 1.48130 1.07190 1.57724 1.18045 1.18118 0.85564 0.78137 0.83087 1.90748 1.74353 1.47033 1.31581 1.21555 0.94451 0.93553 0.93119 1.23163 0.95864 1.00724 1.00323 1.24051 0.92947 0.91857 0.91138 1.68153 1.40976 1.06188 1.07132 1.22690 0.84831 0.92731 0.92679 1.20827 0.95004 0.99127 0.99772 1.23101 0.91340 1.00994 1.02530 1.23064 1.00102 0.94684 1.00227 1.68033 1.13765 1.21111 1.18306 1.22900 1.02619 0.96650 0.81395 1.22483 0.98529 0.99440 0.97561 1.20442 0.91499 0.95359 0.85668 0.93400 1.42579 1.76859 1.10824 1.06730 1.19599 1.33859 0.94392 0.88555 0.90558 1.25481 1.03079 0.96890 1.01256 1.69818 1.51984 1.11110 1.29307 0.85214 0.77879 0.77511 0.79635 1.21624 1.22626 1.19316 0.92209 0.91363 0.94008 0.89371 0.88908 0.81002 0.76231 0.84922 0.86455 0.87704 0.89052 0.86096 0.84185 0.90403 0.94458 0.91797 0.79792 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.03 71.98 0.65 -3.53 16 2 C -0.10 -3.32 2.47 -10.57 -0.03 -3.35 16 3 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 4 C 0.12 3.52 5.75 86.51 0.50 4.02 16 5 N -0.58 -17.12 2.97 -820.75 -2.43 -19.56 16 6 C 0.56 16.85 7.64 86.97 0.66 17.52 16 7 O -0.56 -18.70 16.04 -3.64 -0.06 -18.76 16 8 C 0.12 3.03 6.49 42.00 0.27 3.30 16 9 C -0.18 -3.40 9.72 22.71 0.22 -3.17 16 10 C 0.17 2.47 11.31 84.76 0.96 3.43 16 11 N -0.51 -9.65 9.33 -187.89 -1.75 -11.40 16 12 C 0.34 7.24 7.31 138.79 1.01 8.25 16 13 C -0.13 -2.18 6.23 -11.54 -0.07 -2.25 16 14 C -0.14 -1.84 10.01 30.62 0.31 -1.54 16 15 C -0.14 -1.82 10.24 30.62 0.31 -1.51 16 16 N -0.50 -12.19 6.42 -177.06 -1.14 -13.33 16 17 C 0.09 2.50 6.03 86.36 0.52 3.02 16 18 C -0.14 -4.94 5.66 30.67 0.17 -4.77 16 19 C 0.18 6.94 2.19 45.02 0.10 7.04 16 20 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 21 N -0.73 -36.20 4.41 -322.82 -1.42 -37.62 16 22 C -0.23 -12.61 9.93 84.03 0.83 -11.78 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 25 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 26 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 27 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 29 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.63 7.36 -2.39 -0.02 1.61 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 2.66 7.01 -2.39 -0.02 2.64 16 35 H 0.17 2.77 7.88 -2.91 -0.02 2.75 16 36 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.10 1.48 7.54 -2.38 -0.02 1.46 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.14 3.92 3.96 -52.38 -0.21 3.71 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.37 20.10 7.50 -92.70 -0.70 19.41 16 47 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -69.27 381.68 2.49 -66.78 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.09 Total: 34.24 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.89 Total: 10.88 kcal Atomic # 7 Polarization: -134.53 SS G_CDS: -6.46 Total: -140.99 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.06 Total: -18.76 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -69.27 2.49 -66.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036206922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.070 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds