Wall clock time and date at job start Tue Mar 31 2020 17:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 109.49786 * 2 1 4 4 C 1.53198 * 109.49558 * 239.93066 * 2 1 3 5 5 N 1.46925 * 108.77453 * 185.41105 * 4 2 1 6 6 C 1.34770 * 120.63374 * 233.63134 * 5 4 2 7 7 O 1.21483 * 119.99718 * 359.41711 * 6 5 4 8 8 C 1.48455 * 120.00215 * 179.42094 * 6 5 4 9 9 C 1.39533 * 120.55005 * 200.83443 * 8 6 5 10 10 C 1.38759 * 118.26387 * 179.75641 * 9 8 6 11 11 N 1.32203 * 119.14459 * 0.51530 * 10 9 8 12 12 C 1.31882 * 121.03858 * 359.74607 * 11 10 9 13 13 C 1.50704 * 119.04111 * 180.02562 * 12 11 10 14 14 C 1.52994 * 117.49968 * 8.59460 * 13 12 11 15 15 C 1.52993 * 60.00247 * 252.51304 * 14 13 12 16 16 N 1.31578 * 121.91612 * 359.97438 * 12 11 10 17 17 C 1.46922 * 118.73292 * 53.61525 * 5 4 2 18 18 C 1.53195 * 108.77721 * 306.38332 * 17 5 4 19 19 C 1.53035 * 109.33563 * 54.62521 * 18 17 5 20 20 H 1.09005 * 109.46378 * 58.67190 * 19 18 17 21 21 N 1.46501 * 109.45964 * 178.62879 * 19 18 17 22 22 C 1.36934 * 120.00216 * 274.99718 * 21 19 18 23 23 H 1.07997 * 120.00082 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00274 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99660 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00325 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47073 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46899 * 120.00495 * 26 24 22 29 29 H 1.48495 * 109.47721 * 240.00803 * 26 24 22 30 30 H 1.08993 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46398 * 300.06751 * 1 2 3 32 32 H 1.09002 * 109.46654 * 60.06437 * 1 2 3 33 33 H 1.08999 * 109.58238 * 65.62913 * 4 2 1 34 34 H 1.09000 * 109.70256 * 305.27367 * 4 2 1 35 35 H 1.08001 * 120.86777 * 359.97438 * 9 8 6 36 36 H 1.08002 * 120.42620 * 180.23567 * 10 9 8 37 37 H 1.09001 * 115.54716 * 154.30756 * 13 12 11 38 38 H 1.09003 * 117.49999 * 0.02562 * 14 13 12 39 39 H 1.09001 * 117.49638 * 145.02013 * 14 13 12 40 40 H 1.09000 * 117.50348 * 252.51304 * 15 14 13 41 41 H 1.09000 * 117.49830 * 107.48699 * 15 14 13 42 42 H 1.09004 * 109.58505 * 186.60255 * 17 5 4 43 43 H 1.08996 * 109.59209 * 66.17749 * 17 5 4 44 44 H 1.09001 * 109.49908 * 174.58849 * 18 17 5 45 45 H 1.08999 * 109.49969 * 294.65840 * 18 17 5 46 46 H 0.96998 * 119.99924 * 94.99932 * 21 19 18 47 47 H 0.96997 * 119.99507 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7236 -1.2498 5 7 3.5047 -0.8289 -1.1699 6 6 4.2812 -0.3852 -2.1780 7 8 3.7719 0.0979 -3.1696 8 6 5.7588 -0.4868 -2.0770 9 6 6.5807 0.3228 -2.8618 10 6 7.9554 0.1921 -2.7253 11 7 8.4361 -0.6950 -1.8710 12 6 7.6306 -1.4487 -1.1481 13 6 8.2272 -2.4451 -0.1876 14 6 9.7387 -2.3870 0.0423 15 6 9.1319 -3.5330 -0.7697 16 7 6.3214 -1.3553 -1.2403 17 6 4.1052 -1.4268 0.0303 18 6 3.5709 -0.6954 1.2658 19 6 2.0409 -0.7227 1.2485 20 1 1.6962 -1.7567 1.2355 21 7 1.5273 -0.0524 2.4457 22 6 1.3958 -0.7490 3.6172 23 1 1.6711 -1.7925 3.6588 24 6 0.9096 -0.1138 4.7517 25 7 0.5745 1.1581 4.7011 26 14 0.7295 -1.0642 6.3497 27 1 1.1707 -2.4672 6.1436 28 1 1.5679 -0.4311 7.3992 29 1 -0.6926 -1.0499 6.7767 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5149 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.7638 -0.1574 -2.1389 34 1 1.6054 -1.7213 -1.3010 35 1 6.1580 1.0352 -3.5548 36 1 8.6240 0.8039 -3.3127 37 1 7.5986 -2.7142 0.6612 38 1 10.3016 -1.6279 -0.5009 39 1 10.1048 -2.6178 1.0427 40 1 9.0988 -4.5177 -0.3036 41 1 9.2956 -3.5280 -1.8473 42 1 5.1896 -1.3247 -0.0141 43 1 3.8375 -2.4819 0.0861 44 1 3.9334 -1.1903 2.1667 45 1 3.9164 0.3383 1.2544 46 1 1.2803 0.8849 2.4084 47 1 0.2344 1.6019 5.4937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036206923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:30 Heat of formation + Delta-G solvation = 50.263461 kcal Electronic energy + Delta-G solvation = -28529.193343 eV Core-core repulsion = 24713.093910 eV Total energy + Delta-G solvation = -3816.099433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60405 -41.04854 -39.14140 -37.92103 -36.35788 -35.26039 -34.16636 -33.09171 -32.87494 -31.08275 -28.26984 -27.07103 -26.18521 -25.98779 -24.31960 -23.19964 -23.18032 -22.83740 -21.29343 -20.48631 -19.23742 -19.02733 -18.39641 -17.42220 -16.90596 -16.76122 -16.69585 -16.52254 -15.88098 -15.73726 -15.52004 -15.31375 -15.17173 -14.91024 -14.83957 -14.34929 -14.02508 -13.71298 -13.38476 -13.09349 -12.93565 -12.88638 -12.77352 -12.51410 -12.38648 -12.21385 -12.08975 -12.00247 -11.90953 -11.87695 -11.80164 -11.64846 -11.56176 -11.35591 -11.18937 -10.92862 -10.40952 -10.04100 -9.78007 -8.95825 -7.91958 -5.19655 -0.65238 -0.21202 1.47586 1.48138 1.48504 1.58168 1.69894 2.45038 2.53428 2.58121 2.84676 3.12486 3.28237 3.41779 3.63626 3.75970 3.78087 3.88437 3.93946 4.01142 4.12108 4.13442 4.16826 4.33733 4.34683 4.42568 4.49461 4.55442 4.68855 4.73968 4.80794 4.82592 4.88653 4.98403 4.99687 5.01311 5.12534 5.19185 5.24482 5.32045 5.35039 5.43476 5.46111 5.54233 5.61582 5.71097 6.19102 6.29666 6.74481 6.90477 7.36078 8.11278 8.35336 9.31862 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.003354 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.965768 B = 8346.969393 C =10064.974002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 H 0.053 0.947 4 C 0.123 3.877 5 N -0.581 5.581 6 C 0.564 3.436 7 O -0.559 6.559 8 C 0.119 3.881 9 C -0.178 4.178 10 C 0.168 3.832 11 N -0.510 5.510 12 C 0.336 3.664 13 C -0.127 4.127 14 C -0.142 4.142 15 C -0.143 4.143 16 N -0.495 5.495 17 C 0.086 3.914 18 C -0.139 4.139 19 C 0.179 3.821 20 H 0.048 0.952 21 N -0.731 5.731 22 C -0.230 4.230 23 H 0.077 0.923 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.264 1.264 28 H -0.297 1.297 29 H -0.296 1.296 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.221 0.779 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.370 0.630 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.865 -6.906 -16.514 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.119 4.119 3 H 0.072 0.928 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.351 3.649 7 O -0.437 6.437 8 C -0.027 4.027 9 C -0.201 4.201 10 C 0.000 4.000 11 N -0.224 5.224 12 C 0.071 3.929 13 C -0.147 4.147 14 C -0.180 4.180 15 C -0.181 4.181 16 N -0.212 5.212 17 C -0.036 4.036 18 C -0.180 4.180 19 C 0.070 3.930 20 H 0.066 0.934 21 N -0.370 5.370 22 C -0.362 4.362 23 H 0.095 0.905 24 C -0.268 4.268 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.224 1.224 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.190 0.810 36 H 0.238 0.762 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.202 0.798 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.906 -7.477 -16.285 25.332 hybrid contribution -1.162 0.983 0.753 1.698 sum 16.744 -6.494 -15.532 23.744 Atomic orbital electron populations 1.21571 0.93494 1.02169 1.01413 1.21604 0.96998 0.99005 0.94331 0.92844 1.21778 0.78086 1.01847 0.98240 1.48122 1.07184 1.57644 1.18104 1.18115 0.85565 0.78145 0.83091 1.90750 1.74355 1.46944 1.31677 1.21553 0.94446 0.93567 0.93120 1.23161 0.95848 1.00797 1.00247 1.24053 0.92960 0.91723 0.91253 1.68154 1.40966 1.06332 1.06992 1.22690 0.84827 0.92711 0.92705 1.20824 0.95066 0.99263 0.99589 1.23087 0.91294 1.00951 1.02621 1.23051 1.00138 0.94534 1.00355 1.68031 1.13784 1.20828 1.18549 1.22919 1.02705 0.96633 0.81386 1.22485 0.98511 0.99445 0.97583 1.20440 0.91518 0.95354 0.85654 0.93397 1.42583 1.76898 1.10798 1.06712 1.19634 1.33715 0.94379 0.88510 0.90531 1.25483 1.03124 0.96909 1.01252 1.69830 1.52114 1.11095 1.29196 0.85147 0.76641 0.78358 0.80091 1.18870 1.22432 1.22376 0.92197 0.93985 0.91368 0.88945 0.89401 0.80995 0.76226 0.84913 0.87700 0.86457 0.86100 0.89059 0.84098 0.90412 0.91769 0.94466 0.79793 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.03 71.99 0.65 -3.52 16 2 C -0.10 -3.33 2.46 -10.71 -0.03 -3.35 16 3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.12 3.52 5.72 86.36 0.49 4.02 16 5 N -0.58 -17.12 2.97 -821.62 -2.44 -19.56 16 6 C 0.56 16.85 7.65 86.97 0.66 17.51 16 7 O -0.56 -18.70 16.02 -3.66 -0.06 -18.76 16 8 C 0.12 3.02 6.50 41.99 0.27 3.29 16 9 C -0.18 -3.39 9.72 22.71 0.22 -3.16 16 10 C 0.17 2.46 11.31 84.76 0.96 3.42 16 11 N -0.51 -9.63 9.32 -187.89 -1.75 -11.38 16 12 C 0.34 7.23 7.31 138.79 1.01 8.24 16 13 C -0.13 -2.18 6.23 -11.54 -0.07 -2.25 16 14 C -0.14 -1.84 10.01 30.59 0.31 -1.53 16 15 C -0.14 -1.82 10.23 30.59 0.31 -1.51 16 16 N -0.49 -12.17 6.41 -177.08 -1.13 -13.30 16 17 C 0.09 2.47 6.04 86.36 0.52 2.99 16 18 C -0.14 -4.94 5.66 30.67 0.17 -4.76 16 19 C 0.18 6.93 2.19 45.02 0.10 7.03 16 20 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 21 N -0.73 -36.17 4.41 -322.82 -1.42 -37.60 16 22 C -0.23 -12.51 9.93 84.03 0.83 -11.68 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 25 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 26 Si 0.97 45.86 29.55 68.60 2.03 47.88 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.64 7.37 -2.39 -0.02 1.62 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.65 7.01 -2.39 -0.02 2.64 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.17 2.77 7.87 -2.91 -0.02 2.74 16 36 H 0.22 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.10 1.48 7.54 -2.39 -0.02 1.46 16 39 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.14 3.93 3.95 -53.91 -0.21 3.72 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.37 20.09 7.51 -92.71 -0.70 19.40 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -69.30 381.62 2.48 -66.83 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.09 Total: 34.06 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.89 Total: 10.91 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -6.47 Total: -140.93 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.06 Total: -18.76 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -69.30 2.48 -66.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036206923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.091 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds