Wall clock time and date at job start Tue Mar 31 2020 17:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.51802 * 2 1 4 4 C 1.53189 * 109.50021 * 120.08248 * 2 1 3 5 5 N 1.46920 * 108.89235 * 174.65542 * 4 2 1 6 6 C 1.34783 * 120.62653 * 126.34193 * 5 4 2 7 7 O 1.21473 * 120.00056 * 352.56342 * 6 5 4 8 8 C 1.48459 * 119.99675 * 172.56121 * 6 5 4 9 9 C 1.39541 * 120.54759 * 171.13367 * 8 6 5 10 10 C 1.38759 * 118.26311 * 179.97438 * 9 8 6 11 11 N 1.32202 * 119.14861 * 0.02562 * 10 9 8 12 12 C 1.31883 * 121.03688 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.04174 * 180.02562 * 12 11 10 14 14 C 1.52998 * 117.49910 * 8.75292 * 13 12 11 15 15 C 1.52995 * 117.50013 * 300.09046 * 13 12 11 16 16 N 1.31592 * 121.91504 * 359.74302 * 12 11 10 17 17 C 1.46922 * 118.74399 * 306.32578 * 5 4 2 18 18 C 1.53186 * 108.77613 * 53.60335 * 17 5 4 19 19 C 1.53041 * 109.31417 * 305.36880 * 18 17 5 20 20 H 1.09000 * 109.45837 * 181.38775 * 19 18 17 21 21 N 1.46502 * 109.46070 * 301.35632 * 19 18 17 22 22 C 1.36937 * 120.00006 * 275.00348 * 21 19 18 23 23 H 1.07995 * 119.99827 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99429 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00686 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99530 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47045 * 90.00307 * 26 24 22 28 28 H 1.48498 * 109.47072 * 209.99637 * 26 24 22 29 29 H 1.48496 * 109.47548 * 330.00104 * 26 24 22 30 30 H 1.08999 * 109.47284 * 299.91148 * 1 2 3 31 31 H 1.09001 * 109.47298 * 59.91786 * 1 2 3 32 32 H 1.09005 * 109.46831 * 179.91645 * 1 2 3 33 33 H 1.09001 * 109.58346 * 54.79848 * 4 2 1 34 34 H 1.08997 * 109.58839 * 294.52028 * 4 2 1 35 35 H 1.07996 * 120.86814 * 0.02562 * 9 8 6 36 36 H 1.07997 * 120.42270 * 180.02562 * 10 9 8 37 37 H 1.09004 * 115.54755 * 154.41911 * 13 12 11 38 38 H 1.08999 * 117.49602 * 359.97438 * 14 13 12 39 39 H 1.08996 * 117.50014 * 145.01842 * 14 13 12 40 40 H 1.09004 * 117.49512 * 214.98116 * 15 13 12 41 41 H 1.09002 * 117.49691 * 359.97402 * 15 13 12 42 42 H 1.09005 * 109.59082 * 173.39777 * 17 5 4 43 43 H 1.09000 * 109.58050 * 293.81444 * 17 5 4 44 44 H 1.08997 * 109.49653 * 65.31953 * 18 17 5 45 45 H 1.09006 * 109.49949 * 185.41932 * 18 17 5 46 46 H 0.97003 * 119.99327 * 94.99573 * 21 19 18 47 47 H 0.97001 * 120.00263 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5048 -0.8290 1.1729 6 6 4.2790 -0.3852 2.1830 7 8 3.7809 0.2279 3.1058 8 6 5.7405 -0.6456 2.1677 9 6 6.5788 -0.0393 3.1040 10 6 7.9372 -0.3166 3.0467 11 7 8.3877 -1.1385 2.1144 12 6 7.5676 -1.6950 1.2444 13 6 8.1297 -2.6257 0.2008 14 6 9.5979 -3.0344 0.3360 15 6 9.1729 -2.0581 -0.7637 16 7 6.2720 -1.4654 1.2643 17 6 4.1084 -1.4276 -0.0255 18 6 3.5766 -0.6972 -1.2626 19 6 2.0465 -0.7255 -1.2484 20 1 1.6659 -0.2279 -2.1403 21 7 1.5842 -2.1155 -1.2303 22 6 1.4555 -2.8097 -2.4037 23 1 1.6945 -2.3322 -3.3424 24 6 1.0180 -4.1269 -2.3863 25 7 0.7272 -4.7089 -1.2422 26 14 0.8417 -5.0736 -3.9870 27 1 2.1198 -5.7631 -4.2976 28 1 -0.2425 -6.0790 -3.8507 29 1 0.5080 -4.1314 -5.0853 30 1 -0.3634 0.5124 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6053 -1.7216 1.2979 34 1 1.7617 -0.1593 2.1390 35 1 6.1806 0.6278 3.8543 36 1 8.6175 0.1333 3.7545 37 1 7.4344 -3.3686 -0.1901 38 1 10.1573 -2.6298 1.1795 39 1 9.8685 -4.0460 0.0337 40 1 9.1641 -2.4278 -1.7891 41 1 9.4524 -1.0113 -0.6438 42 1 5.1926 -1.3254 0.0214 43 1 3.8409 -2.4828 -0.0810 44 1 3.9215 0.3367 -1.2509 45 1 3.9413 -1.1927 -2.1624 46 1 1.3694 -2.5442 -0.3870 47 1 0.4211 -5.6293 -1.2302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036206924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:34 Heat of formation + Delta-G solvation = 72.800035 kcal Electronic energy + Delta-G solvation = -29068.885094 eV Core-core repulsion = 25253.762920 eV Total energy + Delta-G solvation = -3815.122174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59536 -39.76702 -37.78700 -37.10405 -34.71430 -33.79131 -32.62984 -31.97003 -31.35081 -29.13707 -27.00547 -25.63521 -25.26574 -24.34193 -23.38272 -22.53401 -21.98917 -21.57088 -19.87106 -18.48507 -18.10303 -17.29536 -17.15770 -16.04045 -15.90192 -15.63857 -15.55203 -14.88228 -14.68954 -14.43855 -14.23382 -14.15685 -13.83337 -13.43960 -13.24585 -12.98864 -12.52157 -12.50136 -12.09546 -11.73427 -11.62606 -11.40675 -11.20092 -11.19100 -11.01777 -10.95430 -10.85979 -10.73327 -10.67779 -10.48310 -10.34629 -10.22854 -10.16665 -9.80921 -9.53183 -9.51482 -9.03750 -8.69337 -8.22677 -6.93945 -5.76618 -3.04540 0.34992 0.66889 2.70989 2.99196 3.38333 3.42629 3.48525 3.49800 3.50626 3.77009 3.95495 4.32340 4.58722 4.59437 4.67109 4.73999 4.82128 4.93302 5.19232 5.29095 5.35374 5.40433 5.45358 5.47663 5.65644 5.67340 5.68773 5.83291 5.86135 5.92536 5.95055 6.01639 6.06412 6.12585 6.17727 6.30162 6.45414 6.50332 6.56575 6.65140 6.69566 6.82556 6.85423 7.00319 7.05479 7.62587 7.70775 7.77777 8.19030 8.41868 9.53460 10.10710 10.45946 11.45941 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.004132 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.758393 B = 6774.980457 C = 8700.769584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.115 3.885 5 N -0.570 5.570 6 C 0.561 3.439 7 O -0.542 6.542 8 C 0.145 3.855 9 C -0.182 4.182 10 C 0.153 3.847 11 N -0.507 5.507 12 C 0.345 3.655 13 C -0.106 4.106 14 C -0.152 4.152 15 C -0.153 4.153 16 N -0.472 5.472 17 C 0.079 3.921 18 C -0.149 4.149 19 C 0.177 3.823 20 H 0.049 0.951 21 N -0.718 5.718 22 C -0.235 4.235 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.933 5.933 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.176 0.824 37 H 0.135 0.865 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.426 9.128 6.282 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.083 0.917 4 C -0.007 4.007 5 N -0.299 5.299 6 C 0.346 3.654 7 O -0.419 6.419 8 C -0.002 4.002 9 C -0.204 4.204 10 C -0.014 4.014 11 N -0.222 5.222 12 C 0.079 3.921 13 C -0.126 4.126 14 C -0.190 4.190 15 C -0.192 4.192 16 N -0.189 5.189 17 C -0.042 4.042 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.366 4.366 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.178 0.822 36 H 0.193 0.807 37 H 0.153 0.847 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.149 0.851 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.422 8.760 5.911 18.695 hybrid contribution -0.669 -0.222 -0.049 0.707 sum 14.752 8.539 5.863 18.025 Atomic orbital electron populations 1.21660 0.94136 1.03218 1.00443 1.21746 0.96503 0.98786 0.95678 0.91658 1.21780 0.78148 1.01868 0.98910 1.48065 1.07015 1.57024 1.17838 1.17790 0.84358 0.80081 0.83150 1.90748 1.73472 1.41465 1.36260 1.21803 0.95511 0.91992 0.90901 1.22924 0.95074 1.01764 1.00669 1.23308 0.93359 0.90979 0.93783 1.68040 1.40528 1.09195 1.04397 1.22354 0.85306 0.92175 0.92242 1.20724 0.93275 1.00493 0.98096 1.23031 0.94456 1.00143 1.01374 1.23003 1.00638 0.99809 0.95723 1.68370 1.13633 1.15474 1.21406 1.22950 1.01243 0.98237 0.81801 1.22543 1.00009 0.98419 0.98086 1.20300 0.91117 0.87299 0.94619 0.93301 1.42452 1.78936 1.07691 1.06915 1.19215 1.36976 0.93855 0.86583 0.91303 1.24683 1.02384 0.97151 0.96527 1.69647 1.51841 1.13008 1.23634 0.86249 0.77254 0.79851 0.83171 1.21850 1.21932 1.20886 0.93752 0.92766 0.91003 0.90222 0.89745 0.82248 0.80667 0.84688 0.87309 0.88048 0.87652 0.88629 0.85130 0.89998 0.93903 0.90822 0.78162 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.07 37.16 0.34 -1.89 16 2 C -0.11 -1.81 2.68 -90.34 -0.24 -2.05 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.11 2.00 5.42 -3.72 -0.02 1.98 16 5 N -0.57 -9.87 2.97 -173.66 -0.52 -10.38 16 6 C 0.56 9.49 7.67 -12.05 -0.09 9.39 16 7 O -0.54 -9.98 15.89 5.39 0.09 -9.89 16 8 C 0.15 2.12 6.61 -82.63 -0.55 1.57 16 9 C -0.18 -2.07 9.72 -38.90 -0.38 -2.44 16 10 C 0.15 1.46 11.31 -17.20 -0.19 1.27 16 11 N -0.51 -5.82 9.33 -10.74 -0.10 -5.92 16 12 C 0.35 4.42 7.31 -157.29 -1.15 3.27 16 13 C -0.11 -1.15 6.23 -91.77 -0.57 -1.73 16 14 C -0.15 -1.32 10.01 -26.69 -0.27 -1.59 16 15 C -0.15 -1.36 10.24 -26.70 -0.27 -1.64 16 16 N -0.47 -6.86 6.20 -7.32 -0.05 -6.91 16 17 C 0.08 1.39 5.67 -3.72 -0.02 1.37 16 18 C -0.15 -2.63 5.78 -26.61 -0.15 -2.78 16 19 C 0.18 3.40 2.54 -67.73 -0.17 3.23 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -16.75 3.65 -53.23 -0.19 -16.95 16 22 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 26 Si 0.90 21.89 29.55 -169.99 -5.02 16.86 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.35 7.55 -51.93 -0.39 0.96 16 33 H 0.08 1.53 6.64 -51.93 -0.34 1.18 16 34 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 35 H 0.16 1.58 7.76 -52.49 -0.41 1.17 16 36 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.14 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.11 0.97 7.54 -51.93 -0.39 0.58 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.13 2.15 4.01 -81.97 -0.33 1.82 16 43 H 0.08 1.69 7.74 -51.93 -0.40 1.29 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.38 9.60 5.93 -40.82 -0.24 9.36 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -30.68 377.37 -10.44 -41.12 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.06 Total: 11.71 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.99 Total: 1.22 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -0.13 Total: -66.70 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.68 -10.44 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036206924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.918 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds