Wall clock time and date at job start Tue Mar 31 2020 17:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.51802 * 2 1 4 4 C 1.53189 * 109.50021 * 120.08248 * 2 1 3 5 5 N 1.46920 * 108.89235 * 174.65542 * 4 2 1 6 6 C 1.34783 * 120.62653 * 126.34193 * 5 4 2 7 7 O 1.21473 * 120.00056 * 352.56342 * 6 5 4 8 8 C 1.48459 * 119.99675 * 172.56121 * 6 5 4 9 9 C 1.39541 * 120.54759 * 171.13367 * 8 6 5 10 10 C 1.38759 * 118.26311 * 179.97438 * 9 8 6 11 11 N 1.32202 * 119.14861 * 0.02562 * 10 9 8 12 12 C 1.31883 * 121.03688 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.04174 * 180.02562 * 12 11 10 14 14 C 1.52998 * 117.49910 * 8.75292 * 13 12 11 15 15 C 1.52995 * 117.50013 * 300.09046 * 13 12 11 16 16 N 1.31592 * 121.91504 * 359.74302 * 12 11 10 17 17 C 1.46922 * 118.74399 * 306.32578 * 5 4 2 18 18 C 1.53186 * 108.77613 * 53.60335 * 17 5 4 19 19 C 1.53041 * 109.31417 * 305.36880 * 18 17 5 20 20 H 1.09000 * 109.45837 * 181.38775 * 19 18 17 21 21 N 1.46502 * 109.46070 * 301.35632 * 19 18 17 22 22 C 1.36937 * 120.00006 * 275.00348 * 21 19 18 23 23 H 1.07995 * 119.99827 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99429 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00686 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99530 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47045 * 90.00307 * 26 24 22 28 28 H 1.48498 * 109.47072 * 209.99637 * 26 24 22 29 29 H 1.48496 * 109.47548 * 330.00104 * 26 24 22 30 30 H 1.08999 * 109.47284 * 299.91148 * 1 2 3 31 31 H 1.09001 * 109.47298 * 59.91786 * 1 2 3 32 32 H 1.09005 * 109.46831 * 179.91645 * 1 2 3 33 33 H 1.09001 * 109.58346 * 54.79848 * 4 2 1 34 34 H 1.08997 * 109.58839 * 294.52028 * 4 2 1 35 35 H 1.07996 * 120.86814 * 0.02562 * 9 8 6 36 36 H 1.07997 * 120.42270 * 180.02562 * 10 9 8 37 37 H 1.09004 * 115.54755 * 154.41911 * 13 12 11 38 38 H 1.08999 * 117.49602 * 359.97438 * 14 13 12 39 39 H 1.08996 * 117.50014 * 145.01842 * 14 13 12 40 40 H 1.09004 * 117.49512 * 214.98116 * 15 13 12 41 41 H 1.09002 * 117.49691 * 359.97402 * 15 13 12 42 42 H 1.09005 * 109.59082 * 173.39777 * 17 5 4 43 43 H 1.09000 * 109.58050 * 293.81444 * 17 5 4 44 44 H 1.08997 * 109.49653 * 65.31953 * 18 17 5 45 45 H 1.09006 * 109.49949 * 185.41932 * 18 17 5 46 46 H 0.97003 * 119.99327 * 94.99573 * 21 19 18 47 47 H 0.97001 * 120.00263 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5048 -0.8290 1.1729 6 6 4.2790 -0.3852 2.1830 7 8 3.7809 0.2279 3.1058 8 6 5.7405 -0.6456 2.1677 9 6 6.5788 -0.0393 3.1040 10 6 7.9372 -0.3166 3.0467 11 7 8.3877 -1.1385 2.1144 12 6 7.5676 -1.6950 1.2444 13 6 8.1297 -2.6257 0.2008 14 6 9.5979 -3.0344 0.3360 15 6 9.1729 -2.0581 -0.7637 16 7 6.2720 -1.4654 1.2643 17 6 4.1084 -1.4276 -0.0255 18 6 3.5766 -0.6972 -1.2626 19 6 2.0465 -0.7255 -1.2484 20 1 1.6659 -0.2279 -2.1403 21 7 1.5842 -2.1155 -1.2303 22 6 1.4555 -2.8097 -2.4037 23 1 1.6945 -2.3322 -3.3424 24 6 1.0180 -4.1269 -2.3863 25 7 0.7272 -4.7089 -1.2422 26 14 0.8417 -5.0736 -3.9870 27 1 2.1198 -5.7631 -4.2976 28 1 -0.2425 -6.0790 -3.8507 29 1 0.5080 -4.1314 -5.0853 30 1 -0.3634 0.5124 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6053 -1.7216 1.2979 34 1 1.7617 -0.1593 2.1390 35 1 6.1806 0.6278 3.8543 36 1 8.6175 0.1333 3.7545 37 1 7.4344 -3.3686 -0.1901 38 1 10.1573 -2.6298 1.1795 39 1 9.8685 -4.0460 0.0337 40 1 9.1641 -2.4278 -1.7891 41 1 9.4524 -1.0113 -0.6438 42 1 5.1926 -1.3254 0.0214 43 1 3.8409 -2.4828 -0.0810 44 1 3.9215 0.3367 -1.2509 45 1 3.9413 -1.1927 -2.1624 46 1 1.3694 -2.5442 -0.3870 47 1 0.4211 -5.6293 -1.2302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036206924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:33 Heat of formation + Delta-G solvation = 55.988603 kcal Electronic energy + Delta-G solvation = -29069.614092 eV Core-core repulsion = 25253.762920 eV Total energy + Delta-G solvation = -3815.851172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.59778 -41.07369 -39.20423 -37.92265 -36.10182 -35.17567 -34.14922 -33.02693 -32.85330 -30.94262 -28.25600 -27.05566 -26.16750 -25.78561 -25.10144 -23.21863 -23.12806 -22.87943 -21.04242 -19.90847 -19.29325 -19.12085 -18.29337 -17.23881 -16.92402 -16.80750 -16.66199 -16.45355 -15.97556 -15.75654 -15.52485 -15.42077 -14.97369 -14.86985 -14.77391 -14.41478 -14.22977 -13.67651 -13.30931 -13.00441 -12.91419 -12.85196 -12.67333 -12.45896 -12.37568 -12.19663 -12.11231 -12.06768 -11.95388 -11.89887 -11.64302 -11.59076 -11.52987 -11.36147 -11.17222 -10.89938 -10.38378 -9.92482 -9.67445 -8.91088 -7.88132 -5.14392 -0.66973 -0.19636 1.49524 1.49680 1.52600 1.57885 1.75110 2.44207 2.57323 2.60101 2.87403 3.09477 3.30831 3.45815 3.64368 3.80753 3.85990 3.88928 3.92156 4.09194 4.10849 4.12912 4.14846 4.36460 4.42593 4.46542 4.52970 4.60148 4.62824 4.74751 4.81380 4.86894 4.97737 5.01635 5.02809 5.11084 5.14172 5.20969 5.23423 5.29077 5.33503 5.46731 5.47920 5.58907 5.64468 5.74128 6.28024 6.33314 6.76015 6.93143 7.40753 8.16616 8.40872 9.35312 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010881 B = 0.004132 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.758393 B = 6774.980457 C = 8700.769584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.119 3.881 5 N -0.576 5.576 6 C 0.561 3.439 7 O -0.560 6.560 8 C 0.117 3.883 9 C -0.173 4.173 10 C 0.169 3.831 11 N -0.508 5.508 12 C 0.338 3.662 13 C -0.132 4.132 14 C -0.136 4.136 15 C -0.143 4.143 16 N -0.500 5.500 17 C 0.092 3.908 18 C -0.141 4.141 19 C 0.171 3.829 20 H 0.047 0.953 21 N -0.723 5.723 22 C -0.227 4.227 23 H 0.074 0.926 24 C -0.072 4.072 25 N -0.970 5.970 26 Si 0.964 3.036 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.271 1.271 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.176 0.824 36 H 0.225 0.775 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.148 0.852 43 H 0.042 0.958 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.745 10.934 6.384 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.104 0.896 4 C -0.003 4.003 5 N -0.305 5.305 6 C 0.347 3.653 7 O -0.439 6.439 8 C -0.028 4.028 9 C -0.195 4.195 10 C 0.001 3.999 11 N -0.222 5.222 12 C 0.072 3.928 13 C -0.153 4.153 14 C -0.174 4.174 15 C -0.181 4.181 16 N -0.216 5.216 17 C -0.030 4.030 18 C -0.182 4.182 19 C 0.063 3.937 20 H 0.065 0.935 21 N -0.364 5.364 22 C -0.359 4.359 23 H 0.092 0.908 24 C -0.264 4.264 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.196 1.196 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.193 0.807 36 H 0.241 0.759 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.164 0.836 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.206 0.794 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.756 10.611 5.989 21.535 hybrid contribution -1.290 -0.703 0.005 1.469 sum 16.467 9.908 5.994 20.131 Atomic orbital electron populations 1.21590 0.93623 1.01590 1.01982 1.21672 0.96856 0.99180 0.93990 0.89616 1.21659 0.78598 1.00553 0.99501 1.48080 1.06923 1.57402 1.18124 1.18165 0.85520 0.79262 0.82320 1.90720 1.74298 1.42270 1.36585 1.21587 0.94450 0.93883 0.92896 1.23174 0.95537 1.01088 0.99748 1.24110 0.93223 0.89298 0.93248 1.68154 1.40089 1.09423 1.04512 1.22633 0.84783 0.92492 0.92878 1.20791 0.94263 1.01014 0.99184 1.23098 0.92226 1.00923 1.01123 1.23070 0.98877 0.99942 0.96216 1.68103 1.14812 1.16291 1.22439 1.22797 1.02282 0.95865 0.82021 1.22422 0.98501 0.99619 0.97658 1.20512 0.92133 0.85291 0.95807 0.93471 1.42553 1.79005 1.09209 1.05620 1.19569 1.34743 0.93958 0.87641 0.90777 1.25381 1.03534 0.98330 0.99174 1.69810 1.53896 1.12832 1.25565 0.85271 0.76654 0.78439 0.80194 1.21769 1.22847 1.19604 0.91371 0.92060 0.94122 0.92840 0.89110 0.80682 0.75861 0.85898 0.87256 0.86541 0.86454 0.88645 0.83568 0.93959 0.91593 0.91811 0.79406 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.07 71.98 0.65 -3.52 16 2 C -0.10 -3.23 2.68 -10.61 -0.03 -3.26 16 3 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.12 4.23 5.42 86.36 0.47 4.69 16 5 N -0.58 -20.22 2.97 -821.65 -2.44 -22.66 16 6 C 0.56 18.86 7.67 86.97 0.67 19.53 16 7 O -0.56 -20.31 15.89 -3.63 -0.06 -20.37 16 8 C 0.12 3.34 6.61 42.00 0.28 3.61 16 9 C -0.17 -3.53 9.72 22.71 0.22 -3.31 16 10 C 0.17 2.64 11.31 84.76 0.96 3.60 16 11 N -0.51 -10.41 9.33 -187.88 -1.75 -12.16 16 12 C 0.34 8.32 7.31 138.78 1.01 9.33 16 13 C -0.13 -2.80 6.23 -11.54 -0.07 -2.87 16 14 C -0.14 -2.10 10.01 30.62 0.31 -1.79 16 15 C -0.14 -2.29 10.24 30.62 0.31 -1.98 16 16 N -0.50 -14.42 6.20 -177.06 -1.10 -15.52 16 17 C 0.09 3.31 5.67 86.36 0.49 3.80 16 18 C -0.14 -4.94 5.78 30.67 0.18 -4.77 16 19 C 0.17 6.59 2.54 45.12 0.11 6.70 16 20 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 21 N -0.72 -34.75 3.65 -322.32 -1.18 -35.93 16 22 C -0.23 -12.15 9.93 84.03 0.83 -11.32 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 25 N -0.97 -58.77 13.06 21.65 0.28 -58.48 16 26 Si 0.96 45.80 29.55 68.60 2.03 47.83 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 29 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.55 7.55 -2.38 -0.02 1.54 16 33 H 0.05 2.17 6.64 -2.39 -0.02 2.16 16 34 H 0.09 3.09 7.00 -2.39 -0.02 3.07 16 35 H 0.18 2.98 7.76 -2.91 -0.02 2.96 16 36 H 0.23 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 38 H 0.11 1.70 7.54 -2.39 -0.02 1.68 16 39 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.15 4.90 4.01 -61.71 -0.25 4.65 16 43 H 0.04 1.85 7.74 -2.39 -0.02 1.83 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.37 19.59 5.93 -92.71 -0.55 19.04 16 47 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -68.05 377.37 2.85 -65.21 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: 0.20 Total: 37.21 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.86 Total: 14.88 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -6.19 Total: -144.75 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.37 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.05 2.85 -65.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036206924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.195 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds