Wall clock time and date at job start Tue Mar 31 2020 17:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.52299 * 2 1 4 4 C 1.53197 * 109.50000 * 239.91916 * 2 1 3 5 5 N 1.46919 * 108.77726 * 185.41503 * 4 2 1 6 6 C 1.34775 * 120.63217 * 233.58905 * 5 4 2 7 7 O 1.21483 * 119.99837 * 359.48111 * 6 5 4 8 8 C 1.48454 * 120.00203 * 179.48645 * 6 5 4 9 9 C 1.39537 * 120.54685 * 200.68116 * 8 6 5 10 10 C 1.38762 * 118.26145 * 179.76238 * 9 8 6 11 11 N 1.32200 * 119.14615 * 0.50686 * 10 9 8 12 12 C 1.31885 * 121.03961 * 359.75161 * 11 10 9 13 13 C 1.50694 * 119.04422 * 179.97438 * 12 11 10 14 14 C 1.53000 * 117.49969 * 8.60223 * 13 12 11 15 15 C 1.52997 * 60.00139 * 252.50985 * 14 13 12 16 16 N 1.31578 * 121.91047 * 359.97415 * 12 11 10 17 17 C 1.46932 * 118.74140 * 53.60545 * 5 4 2 18 18 C 1.53188 * 108.77298 * 306.39482 * 17 5 4 19 19 C 1.53040 * 109.31756 * 54.63515 * 18 17 5 20 20 H 1.08998 * 109.46378 * 178.62584 * 19 18 17 21 21 N 1.46498 * 109.46154 * 58.64923 * 19 18 17 22 22 C 1.36941 * 119.99690 * 85.00105 * 21 19 18 23 23 H 1.07996 * 119.99788 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99827 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99910 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99852 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46938 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.46981 * 300.00097 * 26 24 22 29 29 H 1.48497 * 109.47138 * 60.00329 * 26 24 22 30 30 H 1.09002 * 109.47511 * 299.92195 * 1 2 3 31 31 H 1.09003 * 109.47189 * 59.92302 * 1 2 3 32 32 H 1.08998 * 109.47338 * 179.91825 * 1 2 3 33 33 H 1.09002 * 109.58242 * 65.62372 * 4 2 1 34 34 H 1.09001 * 109.58512 * 305.20227 * 4 2 1 35 35 H 1.08006 * 120.87049 * 359.97438 * 9 8 6 36 36 H 1.07997 * 120.42693 * 180.23342 * 10 9 8 37 37 H 1.09001 * 115.55102 * 154.30811 * 13 12 11 38 38 H 1.09007 * 117.49760 * 359.97438 * 14 13 12 39 39 H 1.09000 * 117.50228 * 145.02264 * 14 13 12 40 40 H 1.08999 * 117.49977 * 252.51051 * 15 14 13 41 41 H 1.09000 * 117.50432 * 107.48798 * 15 14 13 42 42 H 1.08998 * 109.58880 * 186.60312 * 17 5 4 43 43 H 1.09005 * 109.69708 * 66.24958 * 17 5 4 44 44 H 1.08998 * 109.49733 * 294.67951 * 18 17 5 45 45 H 1.09005 * 109.49900 * 174.58475 * 18 17 5 46 46 H 0.97003 * 120.00399 * 265.00500 * 21 19 18 47 47 H 0.96998 * 119.99576 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5045 -0.8292 -1.1696 6 6 4.2811 -0.3864 -2.1782 7 8 3.7719 0.0969 -3.1697 8 6 5.7586 -0.4893 -2.0777 9 6 6.5810 0.3171 -2.8654 10 6 7.9556 0.1851 -2.7294 11 7 8.4358 -0.6999 -1.8728 12 6 7.6300 -1.4506 -1.1472 13 6 8.2260 -2.4455 -0.1850 14 6 9.7379 -2.3892 0.0432 15 6 9.1285 -3.5362 -0.7654 16 7 6.3209 -1.3560 -1.2389 17 6 4.1053 -1.4267 0.0308 18 6 3.5708 -0.6950 1.2660 19 6 2.0407 -0.7231 1.2484 20 1 1.6581 -0.2243 2.1388 21 7 1.5782 -2.1130 1.2308 22 6 1.4468 -2.8058 2.4047 23 1 1.6836 -2.3273 3.3435 24 6 1.0080 -4.1227 2.3881 25 7 0.7189 -4.7056 1.2440 26 14 0.8280 -5.0674 3.9895 27 1 0.3478 -6.4428 3.7015 28 1 2.1440 -5.1362 4.6742 29 1 -0.1503 -4.3744 4.8658 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0276 -0.0015 33 1 1.7637 -0.1579 -2.1389 34 1 1.6052 -1.7216 -1.2980 35 1 6.1586 1.0280 -3.5602 36 1 8.6245 0.7944 -3.3190 37 1 7.5979 -2.7116 0.6652 38 1 10.3015 -1.6327 -0.5029 39 1 10.1047 -2.6182 1.0438 40 1 9.0944 -4.5198 -0.2968 41 1 9.2911 -3.5342 -1.8432 42 1 5.1895 -1.3246 -0.0137 43 1 3.8396 -2.4823 0.0880 44 1 3.9158 0.3388 1.2540 45 1 3.9333 -1.1896 2.1671 46 1 1.3652 -2.5427 0.3876 47 1 0.4127 -5.6259 1.2324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036206925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:37 Heat of formation + Delta-G solvation = 71.431625 kcal Electronic energy + Delta-G solvation = -29031.570888 eV Core-core repulsion = 25216.389375 eV Total energy + Delta-G solvation = -3815.181513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60393 -39.78234 -37.80600 -37.11538 -34.70695 -33.80564 -32.64987 -31.98366 -31.36191 -29.14626 -27.01674 -25.64138 -25.28439 -24.35541 -23.39414 -22.53017 -22.00256 -21.58985 -19.87261 -18.46836 -18.10376 -17.31212 -17.21718 -16.14364 -15.86601 -15.66544 -15.46004 -14.94141 -14.71078 -14.35606 -14.25140 -14.17295 -13.87975 -13.48870 -13.26286 -12.92897 -12.52441 -12.49991 -12.12328 -11.72769 -11.67534 -11.42218 -11.22711 -11.14080 -11.04687 -10.93570 -10.84771 -10.74995 -10.68839 -10.49201 -10.34290 -10.25055 -10.20136 -9.82586 -9.54266 -9.52618 -9.05701 -8.73484 -8.25100 -6.94751 -5.76750 -3.04921 0.36658 0.66569 2.68608 2.98021 3.37192 3.43035 3.48188 3.48851 3.52021 3.70263 3.99827 4.30743 4.58264 4.59168 4.66274 4.74204 4.81938 4.92083 5.18351 5.27415 5.33882 5.38860 5.44014 5.47646 5.64986 5.65674 5.67036 5.82042 5.84477 5.92014 5.93869 6.00542 6.05121 6.10637 6.16095 6.29087 6.43925 6.48845 6.55577 6.62845 6.67458 6.80193 6.82246 6.98154 7.03037 7.60846 7.69898 7.77175 8.18239 8.41694 9.53159 10.10147 10.45375 11.45672 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.004066 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.083956 B = 6885.555798 C = 8812.782921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.115 3.885 5 N -0.570 5.570 6 C 0.562 3.438 7 O -0.542 6.542 8 C 0.147 3.853 9 C -0.182 4.182 10 C 0.153 3.847 11 N -0.507 5.507 12 C 0.345 3.655 13 C -0.105 4.105 14 C -0.153 4.153 15 C -0.153 4.153 16 N -0.473 5.473 17 C 0.081 3.919 18 C -0.150 4.150 19 C 0.177 3.823 20 H 0.049 0.951 21 N -0.717 5.717 22 C -0.237 4.237 23 H 0.068 0.932 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.292 1.292 28 H -0.287 1.287 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.135 0.865 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.415 9.627 -6.130 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.007 4.007 5 N -0.299 5.299 6 C 0.347 3.653 7 O -0.419 6.419 8 C -0.001 4.001 9 C -0.205 4.205 10 C -0.014 4.014 11 N -0.222 5.222 12 C 0.079 3.921 13 C -0.125 4.125 14 C -0.190 4.190 15 C -0.191 4.191 16 N -0.190 5.190 17 C -0.040 4.040 18 C -0.192 4.192 19 C 0.067 3.933 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.368 4.368 23 H 0.086 0.914 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.214 1.214 29 H -0.214 1.214 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.177 0.823 36 H 0.193 0.807 37 H 0.153 0.847 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.432 9.147 -5.847 18.868 hybrid contribution -0.681 -0.143 0.131 0.709 sum 14.750 9.003 -5.715 18.202 Atomic orbital electron populations 1.21663 0.94091 1.03255 1.00454 1.21703 0.96580 0.98766 0.95705 0.91680 1.21787 0.78073 1.01974 0.98819 1.48066 1.07051 1.56774 1.18011 1.17793 0.84496 0.79313 0.83742 1.90760 1.73562 1.46650 1.30968 1.21764 0.95541 0.91601 0.91170 1.22908 0.95234 1.01493 1.00884 1.23297 0.93077 0.92691 0.92371 1.68037 1.41187 1.06184 1.06755 1.22313 0.85232 0.92205 0.92333 1.20707 0.93973 0.98358 0.99496 1.23026 0.92904 1.01293 1.01808 1.22988 1.01562 0.94112 1.00484 1.68309 1.12805 1.19879 1.17982 1.22844 1.00877 0.98395 0.81922 1.22556 1.00151 0.98375 0.98078 1.20234 0.91052 0.87367 0.94641 0.93262 1.42446 1.78962 1.07681 1.06892 1.19168 1.37199 0.93917 0.86526 0.91363 1.24688 1.02311 0.97149 0.96535 1.69641 1.51695 1.13069 1.23676 0.86320 0.77731 0.79228 0.83191 1.21819 1.21383 1.21411 0.92751 0.93755 0.90970 0.89677 0.90148 0.82347 0.80665 0.84744 0.87301 0.88048 0.87670 0.88633 0.85700 0.89743 0.93916 0.90828 0.78133 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.05 37.15 0.34 -1.87 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 2.00 5.42 -3.71 -0.02 1.98 16 5 N -0.57 -9.84 2.97 -173.65 -0.52 -10.36 16 6 C 0.56 9.51 7.65 -12.05 -0.09 9.42 16 7 O -0.54 -10.06 16.02 5.38 0.09 -9.97 16 8 C 0.15 2.14 6.50 -82.64 -0.54 1.60 16 9 C -0.18 -2.07 9.72 -38.90 -0.38 -2.45 16 10 C 0.15 1.46 11.31 -17.20 -0.19 1.26 16 11 N -0.51 -5.81 9.32 -10.74 -0.10 -5.91 16 12 C 0.35 4.42 7.31 -157.31 -1.15 3.27 16 13 C -0.11 -1.14 6.23 -91.77 -0.57 -1.72 16 14 C -0.15 -1.30 10.01 -26.73 -0.27 -1.57 16 15 C -0.15 -1.39 10.23 -26.73 -0.27 -1.67 16 16 N -0.47 -6.89 6.40 -7.32 -0.05 -6.93 16 17 C 0.08 1.42 5.78 -3.71 -0.02 1.40 16 18 C -0.15 -2.63 5.78 -26.61 -0.15 -2.79 16 19 C 0.18 3.39 2.53 -67.89 -0.17 3.22 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -16.71 3.64 -53.38 -0.19 -16.91 16 22 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 23 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 26 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 33 H 0.08 1.44 7.01 -51.93 -0.36 1.08 16 34 H 0.08 1.54 6.64 -51.93 -0.34 1.20 16 35 H 0.16 1.55 7.87 -52.48 -0.41 1.14 16 36 H 0.18 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.11 0.96 7.54 -51.93 -0.39 0.57 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.13 2.05 3.95 -78.27 -0.31 1.74 16 43 H 0.08 1.74 7.74 -51.93 -0.40 1.34 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.38 9.59 5.93 -40.82 -0.24 9.35 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -30.71 377.66 -10.41 -41.12 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.05 Total: 11.67 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.98 Total: 1.27 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -0.13 Total: -66.63 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.71 -10.41 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036206925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.552 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds