Wall clock time and date at job start Tue Mar 31 2020 17:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.52299 * 2 1 4 4 C 1.53197 * 109.50000 * 239.91916 * 2 1 3 5 5 N 1.46919 * 108.77726 * 185.41503 * 4 2 1 6 6 C 1.34775 * 120.63217 * 233.58905 * 5 4 2 7 7 O 1.21483 * 119.99837 * 359.48111 * 6 5 4 8 8 C 1.48454 * 120.00203 * 179.48645 * 6 5 4 9 9 C 1.39537 * 120.54685 * 200.68116 * 8 6 5 10 10 C 1.38762 * 118.26145 * 179.76238 * 9 8 6 11 11 N 1.32200 * 119.14615 * 0.50686 * 10 9 8 12 12 C 1.31885 * 121.03961 * 359.75161 * 11 10 9 13 13 C 1.50694 * 119.04422 * 179.97438 * 12 11 10 14 14 C 1.53000 * 117.49969 * 8.60223 * 13 12 11 15 15 C 1.52997 * 60.00139 * 252.50985 * 14 13 12 16 16 N 1.31578 * 121.91047 * 359.97415 * 12 11 10 17 17 C 1.46932 * 118.74140 * 53.60545 * 5 4 2 18 18 C 1.53188 * 108.77298 * 306.39482 * 17 5 4 19 19 C 1.53040 * 109.31756 * 54.63515 * 18 17 5 20 20 H 1.08998 * 109.46378 * 178.62584 * 19 18 17 21 21 N 1.46498 * 109.46154 * 58.64923 * 19 18 17 22 22 C 1.36941 * 119.99690 * 85.00105 * 21 19 18 23 23 H 1.07996 * 119.99788 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99827 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99910 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99852 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46938 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.46981 * 300.00097 * 26 24 22 29 29 H 1.48497 * 109.47138 * 60.00329 * 26 24 22 30 30 H 1.09002 * 109.47511 * 299.92195 * 1 2 3 31 31 H 1.09003 * 109.47189 * 59.92302 * 1 2 3 32 32 H 1.08998 * 109.47338 * 179.91825 * 1 2 3 33 33 H 1.09002 * 109.58242 * 65.62372 * 4 2 1 34 34 H 1.09001 * 109.58512 * 305.20227 * 4 2 1 35 35 H 1.08006 * 120.87049 * 359.97438 * 9 8 6 36 36 H 1.07997 * 120.42693 * 180.23342 * 10 9 8 37 37 H 1.09001 * 115.55102 * 154.30811 * 13 12 11 38 38 H 1.09007 * 117.49760 * 359.97438 * 14 13 12 39 39 H 1.09000 * 117.50228 * 145.02264 * 14 13 12 40 40 H 1.08999 * 117.49977 * 252.51051 * 15 14 13 41 41 H 1.09000 * 117.50432 * 107.48798 * 15 14 13 42 42 H 1.08998 * 109.58880 * 186.60312 * 17 5 4 43 43 H 1.09005 * 109.69708 * 66.24958 * 17 5 4 44 44 H 1.08998 * 109.49733 * 294.67951 * 18 17 5 45 45 H 1.09005 * 109.49900 * 174.58475 * 18 17 5 46 46 H 0.97003 * 120.00399 * 265.00500 * 21 19 18 47 47 H 0.96998 * 119.99576 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5045 -0.8292 -1.1696 6 6 4.2811 -0.3864 -2.1782 7 8 3.7719 0.0969 -3.1697 8 6 5.7586 -0.4893 -2.0777 9 6 6.5810 0.3171 -2.8654 10 6 7.9556 0.1851 -2.7294 11 7 8.4358 -0.6999 -1.8728 12 6 7.6300 -1.4506 -1.1472 13 6 8.2260 -2.4455 -0.1850 14 6 9.7379 -2.3892 0.0432 15 6 9.1285 -3.5362 -0.7654 16 7 6.3209 -1.3560 -1.2389 17 6 4.1053 -1.4267 0.0308 18 6 3.5708 -0.6950 1.2660 19 6 2.0407 -0.7231 1.2484 20 1 1.6581 -0.2243 2.1388 21 7 1.5782 -2.1130 1.2308 22 6 1.4468 -2.8058 2.4047 23 1 1.6836 -2.3273 3.3435 24 6 1.0080 -4.1227 2.3881 25 7 0.7189 -4.7056 1.2440 26 14 0.8280 -5.0674 3.9895 27 1 0.3478 -6.4428 3.7015 28 1 2.1440 -5.1362 4.6742 29 1 -0.1503 -4.3744 4.8658 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0276 -0.0015 33 1 1.7637 -0.1579 -2.1389 34 1 1.6052 -1.7216 -1.2980 35 1 6.1586 1.0280 -3.5602 36 1 8.6245 0.7944 -3.3190 37 1 7.5979 -2.7116 0.6652 38 1 10.3015 -1.6327 -0.5029 39 1 10.1047 -2.6182 1.0438 40 1 9.0944 -4.5198 -0.2968 41 1 9.2911 -3.5342 -1.8432 42 1 5.1895 -1.3246 -0.0137 43 1 3.8396 -2.4823 0.0880 44 1 3.9158 0.3388 1.2540 45 1 3.9333 -1.1896 2.1671 46 1 1.3652 -2.5427 0.3876 47 1 0.4127 -5.6259 1.2324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036206925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:36 Heat of formation + Delta-G solvation = 54.523739 kcal Electronic energy + Delta-G solvation = -29032.304069 eV Core-core repulsion = 25216.389375 eV Total energy + Delta-G solvation = -3815.914694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.60409 -41.08765 -39.22186 -37.93304 -36.09845 -35.17495 -34.16887 -33.03334 -32.86326 -30.94878 -28.26329 -27.05953 -26.18211 -25.78973 -25.11131 -23.22082 -23.13419 -22.89479 -21.04057 -19.89409 -19.28907 -19.11957 -18.35330 -17.36074 -16.83494 -16.74928 -16.73522 -16.40480 -15.96200 -15.85363 -15.56617 -15.24247 -15.09884 -14.87079 -14.81844 -14.37187 -14.21076 -13.67067 -13.31833 -13.01439 -12.93621 -12.82759 -12.68004 -12.46424 -12.39576 -12.21464 -12.16352 -12.00697 -11.95671 -11.90619 -11.66578 -11.59500 -11.52911 -11.37058 -11.18737 -10.88857 -10.40352 -9.96625 -9.69837 -8.91604 -7.87996 -5.14452 -0.64675 -0.19689 1.49354 1.49497 1.50977 1.56865 1.73568 2.44716 2.56019 2.60184 2.85060 3.12238 3.29120 3.45658 3.64389 3.80500 3.85733 3.88632 3.92180 4.08341 4.09843 4.12217 4.14132 4.34655 4.41014 4.45909 4.51722 4.59671 4.61856 4.73828 4.80264 4.86209 4.97301 5.01066 5.02010 5.10404 5.13236 5.20003 5.22911 5.27041 5.33194 5.44021 5.46491 5.58040 5.62437 5.73892 6.25995 6.33235 6.75977 6.92526 7.40675 8.16544 8.40653 9.35179 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011012 B = 0.004066 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.083956 B = 6885.555798 C = 8812.782921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.120 3.880 5 N -0.575 5.575 6 C 0.561 3.439 7 O -0.561 6.561 8 C 0.119 3.881 9 C -0.174 4.174 10 C 0.169 3.831 11 N -0.508 5.508 12 C 0.338 3.662 13 C -0.131 4.131 14 C -0.132 4.132 15 C -0.150 4.150 16 N -0.501 5.501 17 C 0.094 3.906 18 C -0.142 4.142 19 C 0.172 3.828 20 H 0.048 0.952 21 N -0.723 5.723 22 C -0.229 4.229 23 H 0.074 0.926 24 C -0.072 4.072 25 N -0.969 5.969 26 Si 0.965 3.035 27 H -0.301 1.301 28 H -0.280 1.280 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.176 0.824 36 H 0.225 0.775 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.742 11.648 -6.098 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.003 4.003 5 N -0.304 5.304 6 C 0.348 3.652 7 O -0.440 6.440 8 C -0.027 4.027 9 C -0.196 4.196 10 C 0.001 3.999 11 N -0.222 5.222 12 C 0.072 3.928 13 C -0.151 4.151 14 C -0.169 4.169 15 C -0.188 4.188 16 N -0.218 5.218 17 C -0.028 4.028 18 C -0.182 4.182 19 C 0.063 3.937 20 H 0.066 0.934 21 N -0.364 5.364 22 C -0.361 4.361 23 H 0.092 0.908 24 C -0.264 4.264 25 N -0.620 5.620 26 Si 0.795 3.205 27 H -0.228 1.228 28 H -0.206 1.206 29 H -0.207 1.207 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.193 0.807 36 H 0.241 0.759 37 H 0.144 0.856 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.159 0.841 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.206 0.794 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.775 11.210 -5.790 21.798 hybrid contribution -1.305 -0.683 0.037 1.473 sum 16.470 10.528 -5.753 20.376 Atomic orbital electron populations 1.21594 0.93618 1.01593 1.02003 1.21628 0.96895 0.99242 0.93933 0.89452 1.21669 0.78505 1.00625 0.99477 1.48082 1.06973 1.57133 1.18238 1.18177 0.85720 0.78399 0.82940 1.90731 1.74416 1.47511 1.31384 1.21540 0.94328 0.93520 0.93280 1.23167 0.95774 1.00701 0.99980 1.24103 0.92923 0.91643 0.91215 1.68151 1.40763 1.06336 1.06929 1.22602 0.84710 0.92710 0.92774 1.20802 0.95272 0.99422 0.99590 1.23091 0.90794 1.00489 1.02555 1.23050 1.00687 0.94580 1.00468 1.68065 1.14014 1.20629 1.19114 1.22683 1.01947 0.96031 0.82174 1.22429 0.98631 0.99619 0.97571 1.20452 0.92063 0.85331 0.95869 0.93383 1.42551 1.79045 1.09234 1.05581 1.19534 1.34945 0.94023 0.87612 0.90786 1.25391 1.03472 0.98335 0.99189 1.69808 1.53786 1.12844 1.25608 0.85340 0.77842 0.77393 0.79946 1.22782 1.20598 1.20733 0.92038 0.91352 0.94156 0.89027 0.92875 0.80689 0.75854 0.85569 0.87204 0.86284 0.86625 0.89038 0.84118 0.93743 0.91501 0.91856 0.79403 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.05 71.98 0.65 -3.50 16 2 C -0.10 -3.19 2.67 -10.72 -0.03 -3.22 16 3 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.12 4.22 5.42 86.37 0.47 4.69 16 5 N -0.58 -20.15 2.97 -821.61 -2.44 -22.59 16 6 C 0.56 18.91 7.65 86.97 0.66 19.58 16 7 O -0.56 -20.59 16.02 -3.66 -0.06 -20.65 16 8 C 0.12 3.37 6.50 42.00 0.27 3.64 16 9 C -0.17 -3.51 9.72 22.71 0.22 -3.29 16 10 C 0.17 2.62 11.31 84.76 0.96 3.57 16 11 N -0.51 -10.33 9.32 -187.90 -1.75 -12.08 16 12 C 0.34 8.27 7.31 138.79 1.01 9.29 16 13 C -0.13 -2.74 6.23 -11.54 -0.07 -2.81 16 14 C -0.13 -1.98 10.01 30.59 0.31 -1.67 16 15 C -0.15 -2.53 10.23 30.59 0.31 -2.22 16 16 N -0.50 -14.46 6.40 -177.09 -1.13 -15.59 16 17 C 0.09 3.35 5.78 86.36 0.50 3.85 16 18 C -0.14 -4.92 5.78 30.67 0.18 -4.74 16 19 C 0.17 6.55 2.53 45.02 0.11 6.66 16 20 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 21 N -0.72 -34.70 3.64 -322.81 -1.18 -35.87 16 22 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 23 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 24 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 25 N -0.97 -58.75 13.06 21.65 0.28 -58.46 16 26 Si 0.96 45.76 29.55 68.60 2.03 47.79 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 29 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.54 7.54 -2.39 -0.02 1.52 16 33 H 0.09 3.10 7.01 -2.39 -0.02 3.09 16 34 H 0.05 2.16 6.64 -2.39 -0.02 2.15 16 35 H 0.18 2.91 7.87 -2.91 -0.02 2.89 16 36 H 0.23 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.11 1.65 7.54 -2.38 -0.02 1.64 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.14 4.70 3.95 -54.39 -0.21 4.48 16 43 H 0.04 1.94 7.74 -2.38 -0.02 1.92 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.37 19.59 5.93 -92.71 -0.55 19.04 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -68.30 377.66 2.84 -65.46 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: 0.24 Total: 37.15 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 6.86 Total: 14.86 kcal Atomic # 7 Polarization: -138.38 SS G_CDS: -6.22 Total: -144.60 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -68.30 2.84 -65.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036206925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.984 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds