Wall clock time and date at job start Tue Mar 31 2020 17:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49934 * 2 1 4 4 C 1.53189 * 109.49819 * 239.92879 * 2 1 3 5 5 N 1.46928 * 108.77645 * 185.37893 * 4 2 1 6 6 C 1.34767 * 120.63475 * 233.58674 * 5 4 2 7 7 O 1.21557 * 119.99771 * 5.82899 * 6 5 4 8 8 C 1.47832 * 120.00370 * 185.82946 * 6 5 4 9 9 C 1.39949 * 120.94114 * 220.50695 * 8 6 5 10 10 N 1.32145 * 118.92515 * 180.02562 * 9 8 6 11 11 C 1.31870 * 120.96834 * 359.97438 * 10 9 8 12 12 C 1.50697 * 118.95474 * 180.02562 * 11 10 9 13 13 C 1.53000 * 117.50031 * 188.74802 * 12 11 10 14 14 C 1.53005 * 117.49878 * 120.08588 * 12 11 10 15 15 N 1.31872 * 122.09435 * 0.02664 * 11 10 9 16 16 C 1.32151 * 120.96505 * 359.97438 * 15 11 10 17 17 C 1.46927 * 118.73388 * 53.86598 * 5 4 2 18 18 C 1.53628 * 108.54452 * 306.08904 * 17 5 4 19 19 C 1.53039 * 109.23713 * 54.86054 * 18 17 5 20 20 H 1.08996 * 109.46248 * 58.53281 * 19 18 17 21 21 N 1.46509 * 109.44655 * 178.49786 * 19 18 17 22 22 C 1.36931 * 119.99697 * 275.06224 * 21 19 18 23 23 H 1.08001 * 120.00607 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99865 * 180.02562 * 22 21 19 25 25 N 1.31610 * 120.00205 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99884 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46926 * 90.00247 * 26 24 22 28 28 H 1.48493 * 109.47327 * 210.00329 * 26 24 22 29 29 H 1.48505 * 109.47006 * 330.00448 * 26 24 22 30 30 H 1.09007 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47175 * 300.06551 * 1 2 3 32 32 H 1.09002 * 109.47012 * 60.06823 * 1 2 3 33 33 H 1.09002 * 109.58519 * 65.59740 * 4 2 1 34 34 H 1.09003 * 109.59053 * 305.17228 * 4 2 1 35 35 H 1.08007 * 120.53743 * 0.03956 * 9 8 6 36 36 H 1.09004 * 115.55012 * 334.42107 * 12 11 10 37 37 H 1.08995 * 117.49749 * 0.02562 * 13 12 11 38 38 H 1.08999 * 117.49752 * 145.02547 * 13 12 11 39 39 H 1.08999 * 117.49968 * 214.98271 * 14 12 11 40 40 H 1.09006 * 117.49428 * 0.02562 * 14 12 11 41 41 H 1.08001 * 120.53333 * 179.97438 * 16 15 11 42 42 H 1.08995 * 109.59188 * 65.92481 * 17 5 4 43 43 H 1.09002 * 109.58336 * 186.34922 * 17 5 4 44 44 H 1.09002 * 109.63468 * 294.87072 * 18 17 5 45 45 H 1.09003 * 109.45788 * 174.74097 * 18 17 5 46 46 H 0.96998 * 119.99803 * 95.06232 * 21 19 18 47 47 H 0.97005 * 120.00431 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2807 -0.3852 -2.1789 7 8 3.7799 0.2017 -3.1183 8 6 5.7410 -0.6128 -2.1432 9 6 6.6347 0.3822 -2.5552 10 7 7.9320 0.1358 -2.5072 11 6 8.3867 -1.0256 -2.0789 12 6 9.8753 -1.2578 -2.0425 13 6 10.3618 -2.6761 -1.7382 14 6 10.5079 -1.5741 -0.6857 15 7 7.5803 -1.9904 -1.6815 16 6 6.2687 -1.8295 -1.6964 17 6 4.1057 -1.4307 0.0277 18 6 3.5715 -0.6941 1.2655 19 6 2.0415 -0.7229 1.2482 20 1 1.6979 -1.7572 1.2353 21 7 1.5274 -0.0528 2.4454 22 6 1.3980 -0.7491 3.6173 23 1 1.6744 -1.7923 3.6592 24 6 0.9105 -0.1143 4.7515 25 7 0.7856 -0.7836 5.8779 26 14 0.4316 1.6898 4.6791 27 1 -0.9996 1.8072 4.3011 28 1 0.6447 2.3124 6.0103 29 1 1.2692 2.3841 3.6682 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7633 -0.1578 -2.1389 34 1 1.6057 -1.7216 -1.2981 35 1 6.2699 1.3361 -2.9066 36 1 10.4609 -0.6646 -2.7448 37 1 9.6053 -3.4413 -1.5647 38 1 11.2678 -3.0158 -2.2400 39 1 11.5099 -1.1894 -0.4957 40 1 9.8473 -1.6147 0.1804 41 1 5.6147 -2.6245 -1.3697 42 1 3.8350 -2.4851 0.0814 43 1 5.1902 -1.3316 -0.0185 44 1 3.9161 0.3399 1.2535 45 1 3.9345 -1.1882 2.1668 46 1 1.2788 0.8840 2.4077 47 1 0.4452 -0.3400 6.6705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036209182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:40 Heat of formation + Delta-G solvation = 60.531868 kcal Electronic energy + Delta-G solvation = -28276.779171 eV Core-core repulsion = 24461.125009 eV Total energy + Delta-G solvation = -3815.654162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73059 -40.07336 -37.93668 -37.29686 -35.04731 -34.11858 -33.21157 -32.03091 -31.61888 -29.93858 -27.17272 -26.02891 -25.01983 -24.83157 -22.80068 -22.68410 -21.84180 -21.60749 -20.44024 -19.58948 -18.34952 -17.66954 -17.35646 -17.10550 -16.27089 -15.72232 -15.19796 -15.12052 -14.77909 -14.51143 -14.48109 -14.14484 -13.96323 -13.80977 -13.40974 -13.11025 -12.65607 -12.58738 -12.50040 -12.08153 -11.96158 -11.87569 -11.76468 -11.52836 -11.23483 -11.20125 -11.10302 -10.97373 -10.85473 -10.78397 -10.61254 -10.30426 -10.07760 -9.86710 -9.64755 -9.63282 -9.57590 -8.99763 -8.72189 -7.34625 -5.83918 -3.19789 0.15593 0.68555 2.42711 2.75861 3.16587 3.32186 3.34786 3.35234 3.40912 3.55873 3.83309 4.09304 4.19677 4.47968 4.52753 4.57167 4.63494 4.64008 4.82063 4.94157 4.98260 5.04887 5.11915 5.31467 5.33868 5.35990 5.37601 5.45428 5.52700 5.57474 5.72096 5.73485 5.84489 5.85553 5.90550 5.93197 6.00299 6.16500 6.19745 6.28431 6.39041 6.51330 6.60027 6.66613 6.84446 7.20921 7.66348 7.89853 7.90981 8.35029 9.12925 9.85765 10.05317 11.34240 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.002983 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.454429 B = 9384.720487 C =10568.604526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.598 5.598 6 C 0.570 3.430 7 O -0.535 6.535 8 C -0.241 4.241 9 C 0.206 3.794 10 N -0.516 5.516 11 C 0.364 3.636 12 C -0.109 4.109 13 C -0.152 4.152 14 C -0.152 4.152 15 N -0.517 5.517 16 C 0.188 3.812 17 C 0.098 3.902 18 C -0.151 4.151 19 C 0.189 3.811 20 H 0.059 0.941 21 N -0.745 5.745 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.932 5.932 26 Si 0.882 3.118 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.178 0.822 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.613 -2.562 -17.624 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.329 5.329 6 C 0.356 3.644 7 O -0.413 6.413 8 C -0.249 4.249 9 C 0.039 3.961 10 N -0.229 5.229 11 C 0.099 3.901 12 C -0.129 4.129 13 C -0.189 4.189 14 C -0.191 4.191 15 N -0.231 5.231 16 C 0.021 3.979 17 C -0.025 4.025 18 C -0.192 4.192 19 C 0.079 3.921 20 H 0.077 0.923 21 N -0.386 5.386 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.195 0.805 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.195 0.805 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.293 -2.578 -17.893 23.679 hybrid contribution -1.323 1.557 0.250 2.059 sum 13.970 -1.021 -17.644 22.528 Atomic orbital electron populations 1.21668 0.93939 1.02250 1.01649 1.21796 0.96719 1.00132 0.94787 0.91214 1.21769 0.77583 1.01269 0.99452 1.48079 1.07399 1.59751 1.17717 1.17801 0.85137 0.78886 0.82579 1.90792 1.74509 1.41472 1.34534 1.21738 0.96443 0.99004 1.07671 1.23395 0.87061 0.98294 0.87318 1.68246 1.15693 1.22047 1.16864 1.22382 0.95875 0.84330 0.87512 1.20705 0.87366 1.02171 1.02641 1.23064 1.03056 0.91037 1.01783 1.23032 1.01936 1.02351 0.91750 1.68187 1.04296 1.32908 1.17686 1.23619 0.91369 0.95049 0.87876 1.22277 0.97672 0.97776 0.84782 1.22743 1.00079 1.00395 0.96010 1.20172 0.90308 0.96144 0.85483 0.92337 1.42771 1.78129 1.10134 1.07592 1.19035 1.36537 0.95719 0.86084 0.89179 1.24657 1.01264 0.97395 0.95616 1.69689 1.51925 1.35730 1.00651 0.86600 0.78607 0.86749 0.76846 1.21022 1.21769 1.20392 0.92452 0.91401 0.93453 0.88964 0.90887 0.80492 0.85105 0.87014 0.88029 0.87704 0.88281 0.80517 0.90528 0.90517 0.92247 0.89894 0.80593 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.03 37.16 0.34 -1.61 16 2 C -0.11 -1.66 2.46 -90.50 -0.22 -1.88 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 1.52 5.72 -3.71 -0.02 1.50 16 5 N -0.60 -7.38 2.97 -173.62 -0.51 -7.90 16 6 C 0.57 7.50 7.36 -12.34 -0.09 7.41 16 7 O -0.54 -8.53 16.38 5.32 0.09 -8.45 16 8 C -0.24 -2.78 5.13 -104.69 -0.54 -3.32 16 9 C 0.21 2.36 10.97 -16.78 -0.18 2.17 16 10 N -0.52 -6.11 10.31 -10.39 -0.11 -6.21 16 11 C 0.36 4.05 7.31 -157.06 -1.15 2.90 16 12 C -0.11 -0.92 6.23 -91.77 -0.57 -1.49 16 13 C -0.15 -1.05 10.01 -26.69 -0.27 -1.32 16 14 C -0.15 -1.09 10.24 -26.69 -0.27 -1.37 16 15 N -0.52 -5.67 9.32 -10.39 -0.10 -5.77 16 16 C 0.19 1.94 8.69 -16.78 -0.15 1.80 16 17 C 0.10 1.13 4.98 -3.48 -0.02 1.11 16 18 C -0.15 -2.31 5.67 -26.38 -0.15 -2.46 16 19 C 0.19 3.22 2.19 -67.88 -0.15 3.07 16 20 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 21 N -0.74 -16.24 4.22 -53.38 -0.23 -16.47 16 22 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 23 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -28.41 13.97 55.49 0.78 -27.64 16 26 Si 0.88 21.50 27.74 -169.99 -4.71 16.79 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 30 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.07 1.11 7.37 -51.93 -0.38 0.73 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.11 0.88 7.53 -51.93 -0.39 0.49 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.18 1.44 6.69 -52.49 -0.35 1.09 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.81 4.74 -51.93 -0.25 0.57 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 46 H 0.36 7.96 5.37 -40.82 -0.22 7.74 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -32.15 378.29 -9.83 -41.98 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.04 Total: 7.96 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -3.69 Total: 0.01 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -0.17 Total: -63.99 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.15 -9.83 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036209182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.507 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds