Wall clock time and date at job start Tue Mar 31 2020 17:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49934 * 2 1 4 4 C 1.53189 * 109.49819 * 239.92879 * 2 1 3 5 5 N 1.46928 * 108.77645 * 185.37893 * 4 2 1 6 6 C 1.34767 * 120.63475 * 233.58674 * 5 4 2 7 7 O 1.21557 * 119.99771 * 5.82899 * 6 5 4 8 8 C 1.47832 * 120.00370 * 185.82946 * 6 5 4 9 9 C 1.39949 * 120.94114 * 220.50695 * 8 6 5 10 10 N 1.32145 * 118.92515 * 180.02562 * 9 8 6 11 11 C 1.31870 * 120.96834 * 359.97438 * 10 9 8 12 12 C 1.50697 * 118.95474 * 180.02562 * 11 10 9 13 13 C 1.53000 * 117.50031 * 188.74802 * 12 11 10 14 14 C 1.53005 * 117.49878 * 120.08588 * 12 11 10 15 15 N 1.31872 * 122.09435 * 0.02664 * 11 10 9 16 16 C 1.32151 * 120.96505 * 359.97438 * 15 11 10 17 17 C 1.46927 * 118.73388 * 53.86598 * 5 4 2 18 18 C 1.53628 * 108.54452 * 306.08904 * 17 5 4 19 19 C 1.53039 * 109.23713 * 54.86054 * 18 17 5 20 20 H 1.08996 * 109.46248 * 58.53281 * 19 18 17 21 21 N 1.46509 * 109.44655 * 178.49786 * 19 18 17 22 22 C 1.36931 * 119.99697 * 275.06224 * 21 19 18 23 23 H 1.08001 * 120.00607 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99865 * 180.02562 * 22 21 19 25 25 N 1.31610 * 120.00205 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99884 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46926 * 90.00247 * 26 24 22 28 28 H 1.48493 * 109.47327 * 210.00329 * 26 24 22 29 29 H 1.48505 * 109.47006 * 330.00448 * 26 24 22 30 30 H 1.09007 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47175 * 300.06551 * 1 2 3 32 32 H 1.09002 * 109.47012 * 60.06823 * 1 2 3 33 33 H 1.09002 * 109.58519 * 65.59740 * 4 2 1 34 34 H 1.09003 * 109.59053 * 305.17228 * 4 2 1 35 35 H 1.08007 * 120.53743 * 0.03956 * 9 8 6 36 36 H 1.09004 * 115.55012 * 334.42107 * 12 11 10 37 37 H 1.08995 * 117.49749 * 0.02562 * 13 12 11 38 38 H 1.08999 * 117.49752 * 145.02547 * 13 12 11 39 39 H 1.08999 * 117.49968 * 214.98271 * 14 12 11 40 40 H 1.09006 * 117.49428 * 0.02562 * 14 12 11 41 41 H 1.08001 * 120.53333 * 179.97438 * 16 15 11 42 42 H 1.08995 * 109.59188 * 65.92481 * 17 5 4 43 43 H 1.09002 * 109.58336 * 186.34922 * 17 5 4 44 44 H 1.09002 * 109.63468 * 294.87072 * 18 17 5 45 45 H 1.09003 * 109.45788 * 174.74097 * 18 17 5 46 46 H 0.96998 * 119.99803 * 95.06232 * 21 19 18 47 47 H 0.97005 * 120.00431 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2807 -0.3852 -2.1789 7 8 3.7799 0.2017 -3.1183 8 6 5.7410 -0.6128 -2.1432 9 6 6.6347 0.3822 -2.5552 10 7 7.9320 0.1358 -2.5072 11 6 8.3867 -1.0256 -2.0789 12 6 9.8753 -1.2578 -2.0425 13 6 10.3618 -2.6761 -1.7382 14 6 10.5079 -1.5741 -0.6857 15 7 7.5803 -1.9904 -1.6815 16 6 6.2687 -1.8295 -1.6964 17 6 4.1057 -1.4307 0.0277 18 6 3.5715 -0.6941 1.2655 19 6 2.0415 -0.7229 1.2482 20 1 1.6979 -1.7572 1.2353 21 7 1.5274 -0.0528 2.4454 22 6 1.3980 -0.7491 3.6173 23 1 1.6744 -1.7923 3.6592 24 6 0.9105 -0.1143 4.7515 25 7 0.7856 -0.7836 5.8779 26 14 0.4316 1.6898 4.6791 27 1 -0.9996 1.8072 4.3011 28 1 0.6447 2.3124 6.0103 29 1 1.2692 2.3841 3.6682 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7633 -0.1578 -2.1389 34 1 1.6057 -1.7216 -1.2981 35 1 6.2699 1.3361 -2.9066 36 1 10.4609 -0.6646 -2.7448 37 1 9.6053 -3.4413 -1.5647 38 1 11.2678 -3.0158 -2.2400 39 1 11.5099 -1.1894 -0.4957 40 1 9.8473 -1.6147 0.1804 41 1 5.6147 -2.6245 -1.3697 42 1 3.8350 -2.4851 0.0814 43 1 5.1902 -1.3316 -0.0185 44 1 3.9161 0.3399 1.2535 45 1 3.9345 -1.1882 2.1668 46 1 1.2788 0.8840 2.4077 47 1 0.4452 -0.3400 6.6705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036209182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:39 Heat of formation + Delta-G solvation = 40.963742 kcal Electronic energy + Delta-G solvation = -28277.627708 eV Core-core repulsion = 24461.125009 eV Total energy + Delta-G solvation = -3816.502699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.59537 -41.10992 -39.14717 -37.95585 -36.42999 -35.11428 -34.53356 -33.39198 -32.81523 -31.53978 -28.15859 -27.22854 -26.11744 -25.83464 -24.24543 -23.23139 -23.06610 -22.52224 -21.60844 -20.81188 -19.50310 -19.20330 -18.25743 -17.99660 -17.33495 -16.81231 -16.47491 -16.06024 -16.01228 -15.78900 -15.39751 -15.16879 -15.13150 -14.90320 -14.76578 -14.51866 -14.16056 -13.72865 -13.51236 -13.34593 -13.05008 -12.96421 -12.83544 -12.73125 -12.47442 -12.34908 -12.20790 -12.11393 -11.96064 -11.88391 -11.87309 -11.75914 -11.42009 -11.19446 -11.12739 -10.92337 -10.47800 -10.39234 -9.79648 -9.27925 -8.00494 -5.32214 -0.69702 -0.14769 1.37339 1.38594 1.42931 1.45736 1.77399 2.39052 2.48475 2.61051 2.81490 3.14077 3.19001 3.30853 3.33860 3.53008 3.70657 3.79552 3.86672 3.91305 3.93711 3.98788 4.08201 4.18628 4.30738 4.33058 4.45124 4.53835 4.57910 4.71165 4.74346 4.80699 4.81042 4.88253 4.91973 4.99482 5.08355 5.14160 5.17875 5.23701 5.32355 5.36365 5.41848 5.56587 5.68172 5.80219 6.18679 6.23862 6.83208 6.87816 7.09906 7.87014 8.04503 9.21004 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.002983 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.454429 B = 9384.720487 C =10568.604526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 H 0.060 0.940 4 C 0.126 3.874 5 N -0.595 5.595 6 C 0.575 3.425 7 O -0.565 6.565 8 C -0.251 4.251 9 C 0.201 3.799 10 N -0.531 5.531 11 C 0.357 3.643 12 C -0.126 4.126 13 C -0.141 4.141 14 C -0.147 4.147 15 N -0.524 5.524 16 C 0.193 3.807 17 C 0.108 3.892 18 C -0.144 4.144 19 C 0.182 3.818 20 H 0.056 0.944 21 N -0.748 5.748 22 C -0.217 4.217 23 H 0.064 0.936 24 C -0.062 4.062 25 N -0.984 5.984 26 Si 0.945 3.055 27 H -0.280 1.280 28 H -0.301 1.301 29 H -0.258 1.258 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.186 0.814 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.201 0.799 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.362 0.638 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.738 -2.632 -19.589 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 H 0.079 0.921 4 C 0.004 3.996 5 N -0.326 5.326 6 C 0.363 3.637 7 O -0.445 6.445 8 C -0.258 4.258 9 C 0.035 3.965 10 N -0.244 5.244 11 C 0.092 3.908 12 C -0.146 4.146 13 C -0.178 4.178 14 C -0.185 4.185 15 N -0.237 5.237 16 C 0.026 3.974 17 C -0.014 4.014 18 C -0.185 4.185 19 C 0.074 3.926 20 H 0.074 0.926 21 N -0.390 5.390 22 C -0.348 4.348 23 H 0.082 0.918 24 C -0.254 4.254 25 N -0.635 5.635 26 Si 0.774 3.226 27 H -0.206 1.206 28 H -0.228 1.228 29 H -0.183 1.183 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.203 0.797 36 H 0.158 0.842 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.104 0.896 41 H 0.217 0.783 42 H 0.120 0.880 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.445 -2.653 -19.918 25.965 hybrid contribution -1.605 1.495 0.801 2.335 sum 14.840 -1.158 -19.117 24.228 Atomic orbital electron populations 1.21640 0.93516 1.02559 1.01588 1.21673 0.97035 0.99467 0.94259 0.92117 1.21738 0.77698 1.02106 0.98031 1.48083 1.07377 1.59484 1.17672 1.17924 0.85598 0.78068 0.82114 1.90779 1.75148 1.42843 1.35711 1.21611 0.95446 0.99751 1.09038 1.23601 0.87175 0.98775 0.86988 1.68311 1.15787 1.22608 1.17676 1.22935 0.97142 0.84075 0.86651 1.20889 0.86099 1.03713 1.03885 1.23128 1.03420 0.89993 1.01282 1.23094 1.02432 1.02320 0.90704 1.68288 1.04501 1.32864 1.18091 1.23981 0.91525 0.95041 0.86861 1.22249 0.98265 0.98359 0.82556 1.22546 0.98446 1.00175 0.97330 1.20435 0.91390 0.95919 0.84846 0.92577 1.42810 1.78460 1.10089 1.07649 1.19009 1.33609 0.94722 0.87428 0.91825 1.25371 1.02815 1.01706 0.95489 1.69857 1.54533 1.37598 1.01498 0.85554 0.78607 0.81821 0.76630 1.20588 1.22814 1.18278 0.91978 0.93812 0.91151 0.88922 0.88846 0.79729 0.84185 0.88016 0.85807 0.85709 0.89591 0.78285 0.88005 0.89144 0.93320 0.91635 0.80542 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.03 71.98 0.65 -2.91 16 2 C -0.10 -2.83 2.46 -10.72 -0.03 -2.85 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.13 2.84 5.72 86.36 0.49 3.33 16 5 N -0.60 -13.25 2.97 -821.49 -2.44 -15.69 16 6 C 0.58 14.05 7.36 86.78 0.64 14.69 16 7 O -0.56 -17.18 16.38 -3.90 -0.06 -17.25 16 8 C -0.25 -5.37 5.13 -19.91 -0.10 -5.47 16 9 C 0.20 4.39 10.97 85.06 0.93 5.33 16 10 N -0.53 -12.02 10.31 -186.79 -1.93 -13.94 16 11 C 0.36 7.44 7.31 138.70 1.01 8.45 16 12 C -0.13 -1.92 6.23 -11.54 -0.07 -2.00 16 13 C -0.14 -1.64 10.01 30.62 0.31 -1.34 16 14 C -0.15 -1.83 10.24 30.62 0.31 -1.52 16 15 N -0.52 -10.59 9.32 -186.80 -1.74 -12.33 16 16 C 0.19 3.57 8.69 85.06 0.74 4.31 16 17 C 0.11 2.23 4.98 86.51 0.43 2.66 16 18 C -0.14 -4.22 5.67 30.82 0.17 -4.04 16 19 C 0.18 5.99 2.19 45.02 0.10 6.09 16 20 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 21 N -0.75 -32.21 4.22 -322.79 -1.36 -33.57 16 22 C -0.22 -11.57 10.41 84.04 0.87 -10.69 16 23 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 24 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 25 N -0.98 -61.60 13.97 21.65 0.30 -61.29 16 26 Si 0.95 44.81 27.74 68.60 1.90 46.72 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 28 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 29 H -0.26 -11.19 6.52 99.48 0.65 -10.54 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.04 1.36 7.37 -2.39 -0.02 1.35 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 2.17 7.00 -2.39 -0.02 2.15 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.19 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 1.42 7.53 -2.39 -0.02 1.40 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.20 2.62 6.69 -2.91 -0.02 2.60 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.09 1.68 4.74 -2.39 -0.01 1.67 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.36 15.53 5.37 -92.71 -0.50 15.03 16 47 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -70.49 378.29 2.04 -68.44 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.43 Total: 27.97 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.94 Total: 10.94 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -7.16 Total: -136.83 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.06 Total: -17.25 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.72 kcal Total: -70.49 2.04 -68.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036209182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.407 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds