Wall clock time and date at job start Tue Mar 31 2020 17:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.53007 * 2 1 4 4 C 1.53205 * 109.49690 * 239.91938 * 2 1 3 5 5 N 1.46922 * 108.89379 * 185.48616 * 4 2 1 6 6 C 1.34779 * 120.63050 * 233.52107 * 5 4 2 7 7 O 1.21551 * 119.99930 * 356.19020 * 6 5 4 8 8 C 1.47825 * 119.99946 * 176.19988 * 6 5 4 9 9 C 1.39946 * 120.94575 * 49.70998 * 8 6 5 10 10 N 1.32149 * 118.92799 * 179.71968 * 9 8 6 11 11 C 1.31869 * 120.96596 * 0.56614 * 10 9 8 12 12 C 1.50697 * 118.95319 * 179.72516 * 11 10 9 13 13 C 1.53001 * 117.49841 * 8.72947 * 12 11 10 14 14 C 1.53006 * 117.49901 * 300.07003 * 12 11 10 15 15 N 1.31866 * 122.09425 * 359.71084 * 11 10 9 16 16 C 1.32147 * 120.97129 * 359.97438 * 15 11 10 17 17 C 1.46933 * 118.73891 * 53.53552 * 5 4 2 18 18 C 1.53189 * 108.77606 * 306.39098 * 17 5 4 19 19 C 1.53046 * 109.31050 * 54.63441 * 18 17 5 20 20 H 1.09001 * 109.45453 * 178.62617 * 19 18 17 21 21 N 1.46502 * 109.45954 * 58.65720 * 19 18 17 22 22 C 1.36930 * 120.00555 * 84.99638 * 21 19 18 23 23 H 1.08002 * 119.99960 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00447 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00117 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99638 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46831 * 90.00043 * 26 24 22 28 28 H 1.48496 * 109.46897 * 209.99808 * 26 24 22 29 29 H 1.48500 * 109.47050 * 330.00033 * 26 24 22 30 30 H 1.09002 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47062 * 300.08348 * 1 2 3 32 32 H 1.08996 * 109.47180 * 60.07898 * 1 2 3 33 33 H 1.09003 * 109.58348 * 65.62638 * 4 2 1 34 34 H 1.09003 * 109.58285 * 305.34637 * 4 2 1 35 35 H 1.08005 * 120.53718 * 359.97438 * 9 8 6 36 36 H 1.09003 * 115.55110 * 154.39944 * 12 11 10 37 37 H 1.09004 * 117.49761 * 359.97438 * 13 12 11 38 38 H 1.08995 * 117.49836 * 145.02047 * 13 12 11 39 39 H 1.08996 * 117.49695 * 214.98146 * 14 12 11 40 40 H 1.09000 * 117.49788 * 359.97438 * 14 12 11 41 41 H 1.08000 * 120.54046 * 179.97438 * 16 15 11 42 42 H 1.08995 * 109.58284 * 66.17842 * 17 5 4 43 43 H 1.08993 * 109.58223 * 186.60529 * 17 5 4 44 44 H 1.08998 * 109.49817 * 174.58575 * 18 17 5 45 45 H 1.08998 * 109.50017 * 294.68200 * 18 17 5 46 46 H 0.97001 * 119.99450 * 264.99754 * 21 19 18 47 47 H 0.97007 * 119.99984 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2497 5 7 3.5044 -0.8322 -1.1715 6 6 4.2805 -0.3916 -2.1815 7 8 3.7699 0.0372 -3.1978 8 6 5.7527 -0.4301 -2.0533 9 6 6.4089 -1.5951 -1.6405 10 7 7.7269 -1.5868 -1.5450 11 6 8.4203 -0.4996 -1.8212 12 6 9.9211 -0.5389 -1.6910 13 6 10.5732 -1.9003 -1.4413 14 6 10.5025 -0.8669 -0.3142 15 7 7.8422 0.6207 -2.2079 16 6 6.5294 0.6994 -2.3361 17 6 4.1055 -1.4302 0.0285 18 6 3.5742 -0.6966 1.2639 19 6 2.0440 -0.7216 1.2482 20 1 1.6637 -0.2214 2.1389 21 7 1.5786 -2.1106 1.2322 22 6 1.4473 -2.8023 2.4066 23 1 1.6863 -2.3238 3.3449 24 6 1.0058 -4.1183 2.3915 25 7 0.8790 -4.7829 3.5204 26 14 0.5916 -4.9458 0.7688 27 1 1.8054 -5.6078 0.2268 28 1 -0.4699 -5.9609 0.9876 29 1 0.1102 -3.9265 -0.1980 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.7637 -0.1579 -2.1390 34 1 1.6032 -1.7207 -1.2994 35 1 5.8476 -2.4880 -1.4077 36 1 10.4656 0.1738 -2.3105 37 1 9.9165 -2.7675 -1.3707 38 1 11.5467 -2.0831 -1.8961 39 1 11.4296 -0.3701 -0.0281 40 1 9.7994 -1.0538 0.4974 41 1 6.0632 1.6206 -2.6530 42 1 3.8356 -2.4847 0.0854 43 1 5.1898 -1.3304 -0.0176 44 1 3.9369 -1.1915 2.1648 45 1 3.9214 0.3365 1.2509 46 1 1.3636 -2.5403 0.3896 47 1 0.5702 -5.7025 3.5098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036209185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:47 Heat of formation + Delta-G solvation = 62.480884 kcal Electronic energy + Delta-G solvation = -28806.815144 eV Core-core repulsion = 24991.245498 eV Total energy + Delta-G solvation = -3815.569646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66036 -40.05879 -38.01378 -37.24915 -34.75569 -34.01013 -33.15173 -32.00579 -31.59362 -29.86148 -27.10948 -26.02957 -24.99770 -24.75601 -23.25663 -22.65056 -21.81238 -21.79322 -20.35192 -18.61645 -18.28228 -17.90968 -17.31226 -17.05402 -16.22240 -15.63953 -15.14051 -15.04627 -14.75528 -14.50488 -14.43808 -14.11721 -13.87048 -13.70788 -13.69975 -13.07246 -12.65106 -12.59213 -12.42166 -11.95938 -11.90055 -11.73752 -11.68893 -11.53838 -11.18386 -11.16151 -11.07666 -11.03480 -10.80795 -10.70271 -10.59142 -10.28909 -10.01889 -9.95397 -9.62730 -9.56969 -9.49195 -9.03425 -8.55332 -7.36771 -5.85403 -3.21486 0.25821 0.74471 2.46720 2.85948 3.20206 3.28214 3.30495 3.38727 3.41165 3.62295 3.89055 4.16488 4.28328 4.49821 4.53053 4.64337 4.68510 4.71506 4.91093 5.02228 5.04961 5.11073 5.22733 5.35483 5.38437 5.41927 5.50060 5.51979 5.52409 5.63434 5.73176 5.76600 5.81118 5.90238 5.94731 5.98080 6.11340 6.17277 6.28378 6.34027 6.42381 6.56239 6.58080 6.66194 6.75298 7.33348 7.72679 7.90215 7.98714 8.33380 9.11064 9.83519 10.02904 11.32852 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.003544 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.610622 B = 7898.837595 C = 9001.940589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.072 0.928 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.568 3.432 7 O -0.538 6.538 8 C -0.236 4.236 9 C 0.188 3.812 10 N -0.515 5.515 11 C 0.361 3.639 12 C -0.108 4.108 13 C -0.152 4.152 14 C -0.153 4.153 15 N -0.515 5.515 16 C 0.202 3.798 17 C 0.104 3.896 18 C -0.149 4.149 19 C 0.185 3.815 20 H 0.062 0.938 21 N -0.743 5.743 22 C -0.243 4.243 23 H 0.091 0.909 24 C 0.008 3.992 25 N -0.932 5.932 26 Si 0.877 3.123 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.176 0.824 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.390 10.135 -10.083 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.325 5.325 6 C 0.354 3.646 7 O -0.415 6.415 8 C -0.243 4.243 9 C 0.021 3.979 10 N -0.229 5.229 11 C 0.096 3.904 12 C -0.128 4.128 13 C -0.190 4.190 14 C -0.191 4.191 15 N -0.228 5.228 16 C 0.035 3.965 17 C -0.019 4.019 18 C -0.190 4.190 19 C 0.075 3.925 20 H 0.080 0.920 21 N -0.387 5.387 22 C -0.373 4.373 23 H 0.108 0.892 24 C -0.188 4.188 25 N -0.579 5.579 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.195 0.805 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.194 0.806 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.072 10.250 -10.284 20.928 hybrid contribution -1.367 -0.760 -1.077 1.899 sum 13.705 9.490 -11.361 20.174 Atomic orbital electron populations 1.21671 0.93956 1.02945 1.01031 1.21766 0.96696 0.99300 0.95387 0.90964 1.21722 0.77897 1.01479 0.99275 1.48095 1.07281 1.59215 1.17873 1.17809 0.85298 0.78138 0.83386 1.90788 1.74543 1.47431 1.28785 1.21731 0.96482 0.98495 1.07621 1.23578 0.89906 0.97077 0.87355 1.68185 1.07657 1.29522 1.17500 1.22355 0.96092 0.83864 0.88088 1.20690 0.86677 1.02493 1.02923 1.23067 1.01873 0.92635 1.01404 1.23024 1.02525 1.02595 0.90956 1.68220 1.11437 1.27674 1.15472 1.23318 0.88177 0.97342 0.87651 1.22041 0.96827 0.98932 0.84052 1.22499 1.00107 0.98965 0.97392 1.20191 0.90751 0.86256 0.95325 0.92029 1.42842 1.80457 1.09517 1.05899 1.19044 1.37796 0.94184 0.86287 0.89154 1.24638 1.01394 0.96726 0.96009 1.69686 1.52822 1.10978 1.24417 0.86681 0.78254 0.79616 0.84688 1.21100 1.21672 1.20384 0.91565 0.92207 0.93448 0.89184 0.91113 0.80549 0.85148 0.86995 0.88042 0.87754 0.88298 0.80649 0.89561 0.90967 0.89999 0.92908 0.80605 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.06 37.16 0.34 -1.62 16 2 C -0.11 -1.60 2.67 -90.48 -0.24 -1.85 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.74 5.40 -3.71 -0.02 1.72 16 5 N -0.59 -8.43 2.97 -173.88 -0.52 -8.95 16 6 C 0.57 8.19 7.29 -12.34 -0.09 8.10 16 7 O -0.54 -9.17 16.48 5.32 0.09 -9.08 16 8 C -0.24 -2.97 5.05 -104.69 -0.53 -3.50 16 9 C 0.19 2.25 8.67 -16.78 -0.15 2.11 16 10 N -0.52 -6.30 9.32 -10.40 -0.10 -6.39 16 11 C 0.36 4.28 7.31 -157.07 -1.15 3.13 16 12 C -0.11 -0.98 6.23 -91.77 -0.57 -1.55 16 13 C -0.15 -1.17 10.01 -26.69 -0.27 -1.44 16 14 C -0.15 -1.17 10.24 -26.69 -0.27 -1.45 16 15 N -0.52 -6.33 10.31 -10.39 -0.11 -6.44 16 16 C 0.20 2.40 11.06 -16.77 -0.19 2.21 16 17 C 0.10 1.45 5.14 -3.71 -0.02 1.43 16 18 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 19 C 0.18 3.11 2.54 -67.87 -0.17 2.94 16 20 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 21 N -0.74 -15.43 3.44 -53.37 -0.18 -15.61 16 22 C -0.24 -6.25 10.41 -15.06 -0.16 -6.40 16 23 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 25 N -0.93 -27.93 13.97 55.49 0.78 -27.15 16 26 Si 0.88 20.91 27.74 -169.99 -4.71 16.20 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 30 H 0.07 1.08 7.53 -51.93 -0.39 0.69 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.31 7.03 -51.93 -0.36 0.95 16 34 H 0.07 1.12 6.65 -51.93 -0.35 0.78 16 35 H 0.18 1.89 7.05 -52.48 -0.37 1.52 16 36 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.00 7.53 -51.93 -0.39 0.61 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.36 7.74 -51.93 -0.40 0.95 16 43 H 0.07 0.90 4.50 -51.93 -0.23 0.66 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.36 7.50 3.78 -40.82 -0.15 7.34 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -30.93 374.91 -9.73 -40.66 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.89 Total: 9.53 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.73 Total: 1.59 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -0.13 Total: -64.55 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.20 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.93 -9.73 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036209185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.142 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds