Wall clock time and date at job start Tue Mar 31 2020 17:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.53007 * 2 1 4 4 C 1.53205 * 109.49690 * 239.91938 * 2 1 3 5 5 N 1.46922 * 108.89379 * 185.48616 * 4 2 1 6 6 C 1.34779 * 120.63050 * 233.52107 * 5 4 2 7 7 O 1.21551 * 119.99930 * 356.19020 * 6 5 4 8 8 C 1.47825 * 119.99946 * 176.19988 * 6 5 4 9 9 C 1.39946 * 120.94575 * 49.70998 * 8 6 5 10 10 N 1.32149 * 118.92799 * 179.71968 * 9 8 6 11 11 C 1.31869 * 120.96596 * 0.56614 * 10 9 8 12 12 C 1.50697 * 118.95319 * 179.72516 * 11 10 9 13 13 C 1.53001 * 117.49841 * 8.72947 * 12 11 10 14 14 C 1.53006 * 117.49901 * 300.07003 * 12 11 10 15 15 N 1.31866 * 122.09425 * 359.71084 * 11 10 9 16 16 C 1.32147 * 120.97129 * 359.97438 * 15 11 10 17 17 C 1.46933 * 118.73891 * 53.53552 * 5 4 2 18 18 C 1.53189 * 108.77606 * 306.39098 * 17 5 4 19 19 C 1.53046 * 109.31050 * 54.63441 * 18 17 5 20 20 H 1.09001 * 109.45453 * 178.62617 * 19 18 17 21 21 N 1.46502 * 109.45954 * 58.65720 * 19 18 17 22 22 C 1.36930 * 120.00555 * 84.99638 * 21 19 18 23 23 H 1.08002 * 119.99960 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00447 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00117 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99638 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46831 * 90.00043 * 26 24 22 28 28 H 1.48496 * 109.46897 * 209.99808 * 26 24 22 29 29 H 1.48500 * 109.47050 * 330.00033 * 26 24 22 30 30 H 1.09002 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47062 * 300.08348 * 1 2 3 32 32 H 1.08996 * 109.47180 * 60.07898 * 1 2 3 33 33 H 1.09003 * 109.58348 * 65.62638 * 4 2 1 34 34 H 1.09003 * 109.58285 * 305.34637 * 4 2 1 35 35 H 1.08005 * 120.53718 * 359.97438 * 9 8 6 36 36 H 1.09003 * 115.55110 * 154.39944 * 12 11 10 37 37 H 1.09004 * 117.49761 * 359.97438 * 13 12 11 38 38 H 1.08995 * 117.49836 * 145.02047 * 13 12 11 39 39 H 1.08996 * 117.49695 * 214.98146 * 14 12 11 40 40 H 1.09000 * 117.49788 * 359.97438 * 14 12 11 41 41 H 1.08000 * 120.54046 * 179.97438 * 16 15 11 42 42 H 1.08995 * 109.58284 * 66.17842 * 17 5 4 43 43 H 1.08993 * 109.58223 * 186.60529 * 17 5 4 44 44 H 1.08998 * 109.49817 * 174.58575 * 18 17 5 45 45 H 1.08998 * 109.50017 * 294.68200 * 18 17 5 46 46 H 0.97001 * 119.99450 * 264.99754 * 21 19 18 47 47 H 0.97007 * 119.99984 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2497 5 7 3.5044 -0.8322 -1.1715 6 6 4.2805 -0.3916 -2.1815 7 8 3.7699 0.0372 -3.1978 8 6 5.7527 -0.4301 -2.0533 9 6 6.4089 -1.5951 -1.6405 10 7 7.7269 -1.5868 -1.5450 11 6 8.4203 -0.4996 -1.8212 12 6 9.9211 -0.5389 -1.6910 13 6 10.5732 -1.9003 -1.4413 14 6 10.5025 -0.8669 -0.3142 15 7 7.8422 0.6207 -2.2079 16 6 6.5294 0.6994 -2.3361 17 6 4.1055 -1.4302 0.0285 18 6 3.5742 -0.6966 1.2639 19 6 2.0440 -0.7216 1.2482 20 1 1.6637 -0.2214 2.1389 21 7 1.5786 -2.1106 1.2322 22 6 1.4473 -2.8023 2.4066 23 1 1.6863 -2.3238 3.3449 24 6 1.0058 -4.1183 2.3915 25 7 0.8790 -4.7829 3.5204 26 14 0.5916 -4.9458 0.7688 27 1 1.8054 -5.6078 0.2268 28 1 -0.4699 -5.9609 0.9876 29 1 0.1102 -3.9265 -0.1980 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.7637 -0.1579 -2.1390 34 1 1.6032 -1.7207 -1.2994 35 1 5.8476 -2.4880 -1.4077 36 1 10.4656 0.1738 -2.3105 37 1 9.9165 -2.7675 -1.3707 38 1 11.5467 -2.0831 -1.8961 39 1 11.4296 -0.3701 -0.0281 40 1 9.7994 -1.0538 0.4974 41 1 6.0632 1.6206 -2.6530 42 1 3.8356 -2.4847 0.0854 43 1 5.1898 -1.3304 -0.0176 44 1 3.9369 -1.1915 2.1648 45 1 3.9214 0.3365 1.2509 46 1 1.3636 -2.5403 0.3896 47 1 0.5702 -5.7025 3.5098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036209185.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:46 Heat of formation + Delta-G solvation = 44.508789 kcal Electronic energy + Delta-G solvation = -28807.594472 eV Core-core repulsion = 24991.245498 eV Total energy + Delta-G solvation = -3816.348975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.61363 -41.20192 -39.27666 -37.96173 -36.13231 -35.08447 -34.56793 -33.32912 -32.84953 -31.51936 -28.16737 -27.25349 -26.00124 -25.86649 -24.97025 -23.24036 -23.09802 -22.60876 -21.45903 -20.03126 -19.76373 -19.18952 -18.29224 -18.03798 -17.37440 -16.70619 -16.43345 -16.22508 -16.00532 -15.71888 -15.50546 -15.19666 -15.13552 -15.06074 -14.77533 -14.48199 -14.30011 -13.69679 -13.38198 -13.34224 -13.10994 -12.95670 -12.78579 -12.71666 -12.51691 -12.35814 -12.19870 -12.04300 -11.96536 -11.95715 -11.83750 -11.69703 -11.42326 -11.26173 -11.11307 -10.91348 -10.49194 -10.38716 -9.78466 -9.25434 -7.97928 -5.29480 -0.67403 -0.17125 1.36343 1.37526 1.38914 1.46646 1.74647 2.35311 2.49731 2.60573 2.80412 3.13152 3.17141 3.30588 3.34552 3.59319 3.71338 3.79106 3.86411 3.90439 3.93663 3.96696 4.07384 4.17883 4.26197 4.31316 4.41519 4.49723 4.57228 4.66122 4.75849 4.80315 4.87700 4.90870 4.96404 5.07010 5.09319 5.12534 5.17063 5.19094 5.23758 5.31657 5.39971 5.53890 5.66573 5.84199 6.18212 6.26030 6.82081 6.84872 7.12692 7.88749 8.07155 9.23861 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.003544 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.610622 B = 7898.837595 C = 9001.940589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 H 0.093 0.907 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.576 3.424 7 O -0.563 6.563 8 C -0.245 4.245 9 C 0.187 3.813 10 N -0.525 5.525 11 C 0.355 3.645 12 C -0.123 4.123 13 C -0.145 4.145 14 C -0.145 4.145 15 N -0.525 5.525 16 C 0.204 3.796 17 C 0.111 3.889 18 C -0.142 4.142 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.741 5.741 22 C -0.214 4.214 23 H 0.060 0.940 24 C -0.059 4.059 25 N -0.984 5.984 26 Si 0.938 3.062 27 H -0.280 1.280 28 H -0.303 1.303 29 H -0.253 1.253 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.186 0.814 36 H 0.144 0.856 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.363 0.637 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.863 11.592 -11.958 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.111 0.889 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.363 3.637 7 O -0.443 6.443 8 C -0.253 4.253 9 C 0.020 3.980 10 N -0.239 5.239 11 C 0.091 3.909 12 C -0.143 4.143 13 C -0.183 4.183 14 C -0.183 4.183 15 N -0.238 5.238 16 C 0.038 3.962 17 C -0.011 4.011 18 C -0.183 4.183 19 C 0.070 3.930 20 H 0.069 0.931 21 N -0.385 5.385 22 C -0.345 4.345 23 H 0.078 0.922 24 C -0.250 4.250 25 N -0.636 5.636 26 Si 0.767 3.233 27 H -0.206 1.206 28 H -0.230 1.230 29 H -0.178 1.178 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.203 0.797 36 H 0.161 0.839 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.103 0.897 41 H 0.210 0.790 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.197 0.803 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.570 11.762 -12.189 23.695 hybrid contribution -1.746 -1.099 -0.446 2.111 sum 14.824 10.663 -12.635 22.206 Atomic orbital electron populations 1.21648 0.93630 1.01782 1.02309 1.21683 0.96895 0.99814 0.93642 0.88907 1.21690 0.78152 1.00958 0.99505 1.48068 1.07163 1.59100 1.17832 1.17931 0.85830 0.77232 0.82702 1.90777 1.75195 1.48653 1.29685 1.21571 0.95378 0.99177 1.09164 1.23754 0.90085 0.97241 0.86897 1.68270 1.07676 1.29834 1.18088 1.22940 0.97382 0.83568 0.87041 1.20892 0.85241 1.03874 1.04311 1.23120 1.02395 0.91482 1.01290 1.23092 1.02883 1.02374 0.89942 1.68315 1.11522 1.27904 1.16057 1.23624 0.88146 0.97738 0.86730 1.21934 0.97890 0.97738 0.83523 1.22366 0.98327 1.00350 0.97211 1.20411 0.91984 0.84179 0.96458 0.93134 1.42785 1.80543 1.10896 1.04296 1.18982 1.34740 0.93894 0.86874 0.92158 1.25309 1.02875 0.97743 0.99066 1.69859 1.55575 1.11187 1.26939 0.85672 0.77690 0.78697 0.81289 1.20614 1.23007 1.17779 0.93861 0.92138 0.91054 0.88568 0.92235 0.79687 0.83878 0.88478 0.85736 0.85435 0.89662 0.79026 0.91179 0.89120 0.91668 0.90606 0.80275 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.06 71.98 0.65 -2.90 16 2 C -0.10 -2.66 2.67 -10.70 -0.03 -2.69 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.12 3.24 5.40 86.37 0.47 3.70 16 5 N -0.59 -15.58 2.97 -822.32 -2.45 -18.03 16 6 C 0.58 15.46 7.29 86.78 0.63 16.10 16 7 O -0.56 -18.15 16.48 -3.88 -0.06 -18.22 16 8 C -0.25 -5.74 5.05 -19.91 -0.10 -5.84 16 9 C 0.19 4.21 8.67 85.06 0.74 4.95 16 10 N -0.53 -12.12 9.32 -186.80 -1.74 -13.86 16 11 C 0.36 7.85 7.31 138.71 1.01 8.86 16 12 C -0.12 -1.99 6.23 -11.54 -0.07 -2.06 16 13 C -0.15 -1.93 10.01 30.62 0.31 -1.63 16 14 C -0.14 -1.91 10.24 30.62 0.31 -1.60 16 15 N -0.52 -11.96 10.31 -186.80 -1.93 -13.89 16 16 C 0.20 4.46 11.06 85.06 0.94 5.40 16 17 C 0.11 2.94 5.14 86.36 0.44 3.39 16 18 C -0.14 -4.05 5.78 30.67 0.18 -3.87 16 19 C 0.18 5.79 2.54 45.03 0.11 5.90 16 20 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 21 N -0.74 -30.33 3.44 -322.76 -1.11 -31.44 16 22 C -0.21 -11.13 10.41 84.03 0.87 -10.25 16 23 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 24 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 25 N -0.98 -60.90 13.97 21.65 0.30 -60.60 16 26 Si 0.94 43.47 27.74 68.60 1.90 45.37 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 29 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 30 H 0.04 1.33 7.53 -2.39 -0.02 1.31 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 2.55 7.03 -2.39 -0.02 2.54 16 34 H 0.06 1.77 6.65 -2.39 -0.02 1.75 16 35 H 0.19 3.71 7.05 -2.91 -0.02 3.69 16 36 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.61 7.53 -2.39 -0.02 1.60 16 38 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 42 H 0.07 2.12 7.74 -2.39 -0.02 2.10 16 43 H 0.09 2.09 4.50 -2.39 -0.01 2.08 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.36 14.63 3.78 -92.71 -0.35 14.28 16 47 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -67.39 374.91 2.44 -64.95 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.58 Total: 31.07 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.94 Total: 14.64 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -6.92 Total: -137.81 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.06 Total: -18.22 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.37 kcal Total: -67.39 2.44 -64.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036209185.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.456 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds