Wall clock time and date at job start Tue Mar 31 2020 17:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52352 * 2 1 4 4 C 1.53194 * 109.49756 * 120.07749 * 2 1 3 5 5 N 1.46927 * 108.77242 * 174.58786 * 4 2 1 6 6 C 1.34775 * 120.63101 * 126.37104 * 5 4 2 7 7 O 1.21551 * 120.00160 * 3.79542 * 6 5 4 8 8 C 1.47833 * 120.00160 * 183.79375 * 6 5 4 9 9 C 1.39947 * 120.94079 * 310.26392 * 8 6 5 10 10 N 1.32146 * 118.92528 * 179.97438 * 9 8 6 11 11 C 1.31867 * 120.96547 * 0.02562 * 10 9 8 12 12 C 1.50702 * 118.95325 * 179.97438 * 11 10 9 13 13 C 1.53006 * 117.49704 * 8.64213 * 12 11 10 14 14 C 1.53003 * 117.49781 * 300.02072 * 12 11 10 15 15 N 1.31868 * 122.09958 * 359.97438 * 11 10 9 16 16 C 1.32152 * 120.96395 * 0.02562 * 15 11 10 17 17 C 1.46928 * 118.73800 * 306.64250 * 5 4 2 18 18 C 1.52758 * 109.00865 * 53.31414 * 17 5 4 19 19 C 1.53039 * 109.49836 * 239.91839 * 2 1 3 20 20 H 1.09001 * 109.45911 * 58.66289 * 19 2 1 21 21 N 1.46499 * 109.46055 * 298.68863 * 19 2 1 22 22 C 1.36935 * 120.00153 * 154.99721 * 21 19 2 23 23 H 1.08010 * 119.99850 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00205 * 179.97438 * 22 21 19 25 25 N 1.31625 * 120.00027 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00021 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47206 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47298 * 120.00522 * 26 24 22 29 29 H 1.48508 * 109.47192 * 240.00062 * 26 24 22 30 30 H 1.09003 * 109.47254 * 299.91506 * 1 2 3 31 31 H 1.08991 * 109.47180 * 59.92037 * 1 2 3 32 32 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58599 * 54.80576 * 4 2 1 34 34 H 1.08992 * 109.58907 * 294.37576 * 4 2 1 35 35 H 1.07996 * 120.53867 * 359.70150 * 9 8 6 36 36 H 1.09000 * 115.55077 * 154.34341 * 12 11 10 37 37 H 1.09003 * 117.49702 * 359.97438 * 13 12 11 38 38 H 1.08996 * 117.49997 * 145.02134 * 13 12 11 39 39 H 1.08999 * 117.49491 * 214.97069 * 14 12 11 40 40 H 1.08994 * 117.50130 * 359.97438 * 14 12 11 41 41 H 1.08003 * 120.53764 * 179.97438 * 16 15 11 42 42 H 1.09001 * 109.58383 * 173.14432 * 17 5 4 43 43 H 1.08998 * 109.58938 * 293.56797 * 17 5 4 44 44 H 1.08997 * 109.56940 * 185.54785 * 18 17 5 45 45 H 1.09004 * 109.38723 * 65.50781 * 18 17 5 46 46 H 0.97003 * 119.99974 * 334.99900 * 21 19 2 47 47 H 0.96999 * 119.99654 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8290 1.1696 6 6 4.2812 -0.3854 2.1779 7 8 3.7711 0.0439 3.1942 8 6 5.7533 -0.4210 2.0478 9 6 6.4114 -1.5855 1.6362 10 7 7.7287 -1.5727 1.5329 11 6 8.4206 -0.4853 1.8116 12 6 9.9213 -0.5215 1.6789 13 6 10.5438 -1.7610 1.0331 14 6 10.6824 -1.5320 2.5395 15 7 7.8412 0.6329 2.2025 16 6 6.5283 0.7089 2.3327 17 6 4.1055 -1.4215 -0.0332 18 6 3.5709 -0.6950 -1.2660 19 6 2.0408 -0.7231 -1.2483 20 1 1.6582 -0.2245 -2.1389 21 7 1.5787 -2.1132 -1.2306 22 6 1.4485 -2.8065 -2.4043 23 1 1.6869 -2.3285 -3.3431 24 6 1.0111 -4.1237 -2.3874 25 7 0.7210 -4.7063 -1.2433 26 14 0.8341 -5.0696 -3.9885 27 1 1.2207 -4.1956 -5.1251 28 1 1.7181 -6.2625 -3.9590 29 1 -0.5766 -5.5030 -4.1541 30 1 -0.3634 0.5125 0.8908 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7215 1.2981 34 1 1.7638 -0.1579 2.1389 35 1 5.8520 -2.4814 1.4108 36 1 10.3998 0.4393 1.4890 37 1 9.8678 -2.5505 0.7045 38 1 11.4319 -1.6159 0.4181 39 1 11.6618 -1.2361 2.9155 40 1 10.0978 -2.1703 3.2019 41 1 6.0610 1.6281 2.6539 42 1 5.1895 -1.3158 0.0100 43 1 3.8413 -2.4774 -0.0914 44 1 3.9334 -1.1896 -2.1671 45 1 3.9159 0.3390 -1.2546 46 1 1.3649 -2.5425 -0.3874 47 1 0.4150 -5.6267 -1.2317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036209187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:50 Heat of formation + Delta-G solvation = 57.880985 kcal Electronic energy + Delta-G solvation = -28659.490359 eV Core-core repulsion = 24843.721246 eV Total energy + Delta-G solvation = -3815.769113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.57990 -39.92562 -37.86532 -37.20235 -34.60973 -33.92389 -33.07495 -31.92417 -31.48323 -29.27518 -26.98769 -25.83707 -24.90040 -24.62213 -23.53665 -22.62498 -21.77543 -21.71724 -20.23460 -18.50513 -18.17952 -17.40643 -17.26148 -16.93366 -16.14618 -15.45770 -15.16527 -14.86756 -14.64426 -14.46535 -14.28675 -14.04772 -13.81244 -13.78171 -13.37310 -12.96693 -12.61309 -12.52605 -12.28593 -11.87684 -11.74776 -11.69772 -11.48201 -11.27099 -11.13233 -11.06253 -10.95792 -10.86770 -10.77945 -10.57575 -10.51761 -10.21203 -9.92286 -9.87308 -9.62399 -9.51394 -9.40996 -8.99606 -8.39318 -7.04609 -5.85130 -3.13974 0.33381 0.81409 2.58946 2.98440 3.26106 3.37537 3.44126 3.45961 3.46732 3.71264 3.92526 4.25301 4.39395 4.52314 4.56314 4.69022 4.71774 4.79632 5.03795 5.11115 5.21593 5.27544 5.36359 5.42297 5.48307 5.50319 5.55113 5.63238 5.72255 5.78587 5.83005 5.94139 5.96477 5.97772 6.04298 6.13648 6.23821 6.30158 6.41762 6.50127 6.59209 6.65225 6.67153 6.83294 6.90877 7.48665 7.63817 7.79133 8.11958 8.33224 9.45215 10.00625 10.35784 11.37159 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.003347 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.946041 B = 8363.328108 C = 9877.430838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.589 5.589 6 C 0.566 3.434 7 O -0.540 6.540 8 C -0.234 4.234 9 C 0.188 3.812 10 N -0.516 5.516 11 C 0.359 3.641 12 C -0.106 4.106 13 C -0.152 4.152 14 C -0.154 4.154 15 N -0.516 5.516 16 C 0.200 3.800 17 C 0.106 3.894 18 C -0.150 4.150 19 C 0.179 3.821 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.176 0.824 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.525 9.435 5.708 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.320 5.320 6 C 0.352 3.648 7 O -0.418 6.418 8 C -0.241 4.241 9 C 0.022 3.978 10 N -0.229 5.229 11 C 0.094 3.906 12 C -0.126 4.126 13 C -0.189 4.189 14 C -0.193 4.193 15 N -0.229 5.229 16 C 0.033 3.967 17 C -0.016 4.016 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.196 0.804 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.193 0.807 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.202 9.568 5.966 18.927 hybrid contribution -1.190 -0.721 -0.663 1.541 sum 14.012 8.847 5.303 17.399 Atomic orbital electron populations 1.21665 0.94010 1.03294 1.00543 1.21716 0.96676 0.98848 0.95612 0.91561 1.21736 0.77674 1.01991 0.98831 1.48068 1.07381 1.58901 1.17662 1.17797 0.85235 0.78289 0.83514 1.90783 1.74548 1.47667 1.28810 1.21762 0.96645 0.98376 1.07319 1.23597 0.89830 0.97178 0.87237 1.68178 1.07783 1.29572 1.17374 1.22335 0.96049 0.84014 0.88235 1.20676 0.86148 0.97099 1.08712 1.23060 1.02366 0.98270 0.95233 1.22997 1.01049 1.00638 0.94583 1.68214 1.11400 1.27901 1.15355 1.23311 0.88177 0.97345 0.87821 1.21924 0.96382 0.99429 0.83895 1.22455 1.00666 0.98639 0.97324 1.20213 0.90586 0.87446 0.94936 0.92969 1.42484 1.78979 1.07645 1.06994 1.19249 1.37284 0.93839 0.86560 0.91201 1.24704 1.02174 0.97183 0.96628 1.69655 1.51649 1.13044 1.23616 0.86173 0.77315 0.79982 0.83016 1.20631 1.21938 1.21949 0.93686 0.92714 0.90956 0.90190 0.89526 0.80446 0.85157 0.86938 0.88024 0.87823 0.88476 0.80689 0.91387 0.89048 0.90541 0.93370 0.78096 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.05 37.16 0.34 -1.75 16 2 C -0.11 -1.67 2.67 -90.50 -0.24 -1.92 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.89 5.41 -3.71 -0.02 1.87 16 5 N -0.59 -8.97 2.98 -174.15 -0.52 -9.49 16 6 C 0.57 8.69 7.29 -12.34 -0.09 8.60 16 7 O -0.54 -9.72 16.48 5.32 0.09 -9.63 16 8 C -0.23 -3.12 5.04 -104.69 -0.53 -3.64 16 9 C 0.19 2.39 8.66 -16.78 -0.15 2.24 16 10 N -0.52 -6.56 9.32 -10.40 -0.10 -6.66 16 11 C 0.36 4.42 7.31 -157.07 -1.15 3.27 16 12 C -0.11 -1.00 6.23 -91.77 -0.57 -1.57 16 13 C -0.15 -1.22 10.01 -26.73 -0.27 -1.48 16 14 C -0.15 -1.21 10.23 -26.73 -0.27 -1.48 16 15 N -0.52 -6.59 10.32 -10.39 -0.11 -6.70 16 16 C 0.20 2.50 11.05 -16.77 -0.19 2.31 16 17 C 0.11 1.59 5.12 -3.93 -0.02 1.57 16 18 C -0.15 -2.36 5.76 -26.83 -0.15 -2.52 16 19 C 0.18 3.16 2.53 -67.89 -0.17 2.99 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -15.78 3.64 -53.39 -0.19 -15.97 16 22 C -0.24 -6.01 9.93 -15.06 -0.15 -6.16 16 23 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.32 13.06 55.49 0.72 -25.60 16 26 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.29 7.53 -51.93 -0.39 0.89 16 33 H 0.08 1.40 6.64 -51.93 -0.34 1.06 16 34 H 0.09 1.37 7.02 -51.93 -0.36 1.00 16 35 H 0.18 2.06 7.09 -52.49 -0.37 1.69 16 36 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 1.05 7.53 -51.93 -0.39 0.66 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.18 1.86 8.06 -52.48 -0.42 1.43 16 42 H 0.07 0.91 4.52 -51.93 -0.23 0.67 16 43 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.38 9.03 5.92 -40.82 -0.24 8.79 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -29.61 378.03 -10.09 -39.70 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.93 Total: 10.39 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -3.73 Total: 1.94 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.19 Total: -64.42 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.61 -10.09 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036209187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.585 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds