Wall clock time and date at job start Tue Mar 31 2020 17:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.52352 * 2 1 4 4 C 1.53194 * 109.49756 * 120.07749 * 2 1 3 5 5 N 1.46927 * 108.77242 * 174.58786 * 4 2 1 6 6 C 1.34775 * 120.63101 * 126.37104 * 5 4 2 7 7 O 1.21551 * 120.00160 * 3.79542 * 6 5 4 8 8 C 1.47833 * 120.00160 * 183.79375 * 6 5 4 9 9 C 1.39947 * 120.94079 * 310.26392 * 8 6 5 10 10 N 1.32146 * 118.92528 * 179.97438 * 9 8 6 11 11 C 1.31867 * 120.96547 * 0.02562 * 10 9 8 12 12 C 1.50702 * 118.95325 * 179.97438 * 11 10 9 13 13 C 1.53006 * 117.49704 * 8.64213 * 12 11 10 14 14 C 1.53003 * 117.49781 * 300.02072 * 12 11 10 15 15 N 1.31868 * 122.09958 * 359.97438 * 11 10 9 16 16 C 1.32152 * 120.96395 * 0.02562 * 15 11 10 17 17 C 1.46928 * 118.73800 * 306.64250 * 5 4 2 18 18 C 1.52758 * 109.00865 * 53.31414 * 17 5 4 19 19 C 1.53039 * 109.49836 * 239.91839 * 2 1 3 20 20 H 1.09001 * 109.45911 * 58.66289 * 19 2 1 21 21 N 1.46499 * 109.46055 * 298.68863 * 19 2 1 22 22 C 1.36935 * 120.00153 * 154.99721 * 21 19 2 23 23 H 1.08010 * 119.99850 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00205 * 179.97438 * 22 21 19 25 25 N 1.31625 * 120.00027 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00021 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47206 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47298 * 120.00522 * 26 24 22 29 29 H 1.48508 * 109.47192 * 240.00062 * 26 24 22 30 30 H 1.09003 * 109.47254 * 299.91506 * 1 2 3 31 31 H 1.08991 * 109.47180 * 59.92037 * 1 2 3 32 32 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58599 * 54.80576 * 4 2 1 34 34 H 1.08992 * 109.58907 * 294.37576 * 4 2 1 35 35 H 1.07996 * 120.53867 * 359.70150 * 9 8 6 36 36 H 1.09000 * 115.55077 * 154.34341 * 12 11 10 37 37 H 1.09003 * 117.49702 * 359.97438 * 13 12 11 38 38 H 1.08996 * 117.49997 * 145.02134 * 13 12 11 39 39 H 1.08999 * 117.49491 * 214.97069 * 14 12 11 40 40 H 1.08994 * 117.50130 * 359.97438 * 14 12 11 41 41 H 1.08003 * 120.53764 * 179.97438 * 16 15 11 42 42 H 1.09001 * 109.58383 * 173.14432 * 17 5 4 43 43 H 1.08998 * 109.58938 * 293.56797 * 17 5 4 44 44 H 1.08997 * 109.56940 * 185.54785 * 18 17 5 45 45 H 1.09004 * 109.38723 * 65.50781 * 18 17 5 46 46 H 0.97003 * 119.99974 * 334.99900 * 21 19 2 47 47 H 0.96999 * 119.99654 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8290 1.1696 6 6 4.2812 -0.3854 2.1779 7 8 3.7711 0.0439 3.1942 8 6 5.7533 -0.4210 2.0478 9 6 6.4114 -1.5855 1.6362 10 7 7.7287 -1.5727 1.5329 11 6 8.4206 -0.4853 1.8116 12 6 9.9213 -0.5215 1.6789 13 6 10.5438 -1.7610 1.0331 14 6 10.6824 -1.5320 2.5395 15 7 7.8412 0.6329 2.2025 16 6 6.5283 0.7089 2.3327 17 6 4.1055 -1.4215 -0.0332 18 6 3.5709 -0.6950 -1.2660 19 6 2.0408 -0.7231 -1.2483 20 1 1.6582 -0.2245 -2.1389 21 7 1.5787 -2.1132 -1.2306 22 6 1.4485 -2.8065 -2.4043 23 1 1.6869 -2.3285 -3.3431 24 6 1.0111 -4.1237 -2.3874 25 7 0.7210 -4.7063 -1.2433 26 14 0.8341 -5.0696 -3.9885 27 1 1.2207 -4.1956 -5.1251 28 1 1.7181 -6.2625 -3.9590 29 1 -0.5766 -5.5030 -4.1541 30 1 -0.3634 0.5125 0.8908 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7215 1.2981 34 1 1.7638 -0.1579 2.1389 35 1 5.8520 -2.4814 1.4108 36 1 10.3998 0.4393 1.4890 37 1 9.8678 -2.5505 0.7045 38 1 11.4319 -1.6159 0.4181 39 1 11.6618 -1.2361 2.9155 40 1 10.0978 -2.1703 3.2019 41 1 6.0610 1.6281 2.6539 42 1 5.1895 -1.3158 0.0100 43 1 3.8413 -2.4774 -0.0914 44 1 3.9334 -1.1896 -2.1671 45 1 3.9159 0.3390 -1.2546 46 1 1.3649 -2.5425 -0.3874 47 1 0.4150 -5.6267 -1.2317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036209187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:49 Heat of formation + Delta-G solvation = 41.614308 kcal Electronic energy + Delta-G solvation = -28660.195735 eV Core-core repulsion = 24843.721246 eV Total energy + Delta-G solvation = -3816.474489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.59608 -41.15103 -39.18977 -37.95857 -36.03488 -35.06182 -34.53294 -33.19238 -32.81010 -30.97089 -28.13248 -27.12948 -25.97771 -25.88744 -25.20261 -23.23736 -23.09772 -22.58881 -21.41339 -19.88811 -19.34112 -19.09990 -18.30006 -17.99204 -17.37240 -16.63498 -16.31707 -16.13705 -16.01183 -15.69685 -15.59393 -15.19709 -15.09882 -14.88394 -14.76122 -14.35906 -14.20377 -13.61576 -13.35091 -13.06987 -12.98904 -12.89025 -12.77748 -12.67795 -12.45296 -12.35447 -12.15424 -12.05706 -11.96193 -11.93836 -11.81490 -11.59353 -11.41650 -11.19243 -11.07706 -10.86154 -10.49755 -10.36769 -9.71755 -8.92305 -7.88426 -5.14385 -0.66158 -0.16699 1.39687 1.49149 1.51403 1.59075 1.78838 2.35614 2.60120 2.61651 2.82801 3.11220 3.21035 3.32311 3.45802 3.75129 3.81809 3.86353 3.88096 3.93496 3.97846 4.06651 4.08158 4.26350 4.30498 4.36655 4.49831 4.57059 4.59814 4.69442 4.79736 4.82479 4.91723 4.92139 5.00819 5.08850 5.13302 5.17001 5.18344 5.23651 5.28186 5.32428 5.46046 5.57871 5.62400 5.67228 6.24383 6.33725 6.82805 6.88046 7.41783 8.17054 8.40792 9.34732 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.003347 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.946041 B = 8363.328108 C = 9877.430838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.124 3.876 5 N -0.588 5.588 6 C 0.573 3.427 7 O -0.567 6.567 8 C -0.244 4.244 9 C 0.188 3.812 10 N -0.524 5.524 11 C 0.354 3.646 12 C -0.123 4.123 13 C -0.145 4.145 14 C -0.145 4.145 15 N -0.524 5.524 16 C 0.204 3.796 17 C 0.116 3.884 18 C -0.143 4.143 19 C 0.173 3.827 20 H 0.049 0.951 21 N -0.724 5.724 22 C -0.224 4.224 23 H 0.074 0.926 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.960 3.040 27 H -0.268 1.268 28 H -0.299 1.299 29 H -0.301 1.301 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.183 0.817 36 H 0.144 0.856 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.193 0.807 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.375 0.625 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.497 11.136 5.263 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.106 0.894 4 C 0.002 3.998 5 N -0.318 5.318 6 C 0.360 3.640 7 O -0.447 6.447 8 C -0.252 4.252 9 C 0.022 3.978 10 N -0.238 5.238 11 C 0.090 3.910 12 C -0.143 4.143 13 C -0.183 4.183 14 C -0.183 4.183 15 N -0.237 5.237 16 C 0.038 3.962 17 C -0.006 4.006 18 C -0.183 4.183 19 C 0.064 3.936 20 H 0.067 0.933 21 N -0.365 5.365 22 C -0.356 4.356 23 H 0.092 0.908 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.791 3.209 27 H -0.192 1.192 28 H -0.226 1.226 29 H -0.229 1.229 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.200 0.800 36 H 0.162 0.838 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.102 0.898 41 H 0.210 0.790 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.204 11.312 5.491 21.310 hybrid contribution -1.737 -1.170 -0.492 2.151 sum 15.467 10.142 4.999 19.160 Atomic orbital electron populations 1.21601 0.93838 1.01616 1.01905 1.21640 0.96748 0.99402 0.94010 0.89359 1.21615 0.78137 1.00825 0.99250 1.48046 1.07135 1.58825 1.17780 1.17978 0.85926 0.77351 0.82751 1.90768 1.75276 1.48956 1.29712 1.21565 0.95304 0.99182 1.09117 1.23707 0.90092 0.97197 0.86851 1.68269 1.07631 1.29939 1.17941 1.22967 0.97422 0.83640 0.87014 1.20892 0.84575 0.98400 1.10426 1.23110 1.02590 0.96804 0.95767 1.23080 1.01569 0.99300 0.94325 1.68321 1.11350 1.28136 1.15876 1.23613 0.88175 0.97641 0.86803 1.21778 0.97486 0.97764 0.83593 1.22330 0.98791 1.00050 0.97153 1.20426 0.91861 0.85285 0.95991 0.93315 1.42586 1.79052 1.09205 1.05654 1.19567 1.34600 0.93760 0.87683 0.90777 1.25341 1.03630 0.98432 0.98932 1.69796 1.53878 1.12838 1.25303 0.85261 0.76360 0.78666 0.80595 1.19228 1.22640 1.22881 0.91513 0.92181 0.94064 0.92475 0.89164 0.79972 0.83790 0.88513 0.85697 0.85340 0.89756 0.79030 0.89371 0.91659 0.91424 0.90955 0.79169 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.05 71.98 0.65 -3.24 16 2 C -0.10 -2.90 2.67 -10.72 -0.03 -2.93 16 3 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.12 3.89 5.41 86.36 0.47 4.35 16 5 N -0.59 -17.46 2.98 -823.18 -2.45 -19.91 16 6 C 0.57 17.05 7.29 86.78 0.63 17.68 16 7 O -0.57 -19.98 16.48 -3.88 -0.06 -20.04 16 8 C -0.24 -6.22 5.04 -19.91 -0.10 -6.33 16 9 C 0.19 4.61 8.66 85.06 0.74 5.35 16 10 N -0.52 -12.79 9.32 -186.80 -1.74 -14.53 16 11 C 0.35 8.17 7.31 138.71 1.01 9.18 16 12 C -0.12 -2.06 6.23 -11.54 -0.07 -2.13 16 13 C -0.15 -2.01 10.01 30.60 0.31 -1.70 16 14 C -0.14 -1.94 10.23 30.60 0.31 -1.63 16 15 N -0.52 -12.48 10.32 -186.79 -1.93 -14.41 16 16 C 0.20 4.77 11.05 85.06 0.94 5.71 16 17 C 0.12 3.40 5.12 86.22 0.44 3.84 16 18 C -0.14 -4.28 5.76 30.53 0.18 -4.10 16 19 C 0.17 5.96 2.53 45.02 0.11 6.07 16 20 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 21 N -0.72 -32.04 3.64 -322.81 -1.18 -33.21 16 22 C -0.22 -11.31 9.93 84.03 0.83 -10.48 16 23 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 24 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 25 N -0.97 -56.14 13.06 21.65 0.28 -55.85 16 26 Si 0.96 44.36 29.55 68.60 2.03 46.39 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.47 7.53 -2.39 -0.02 1.46 16 33 H 0.06 2.07 6.64 -2.39 -0.02 2.05 16 34 H 0.09 2.79 7.02 -2.39 -0.02 2.77 16 35 H 0.18 4.17 7.09 -2.91 -0.02 4.15 16 36 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.10 1.68 7.53 -2.39 -0.02 1.66 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.09 2.24 4.52 -2.39 -0.01 2.23 16 43 H 0.07 2.29 7.74 -2.39 -0.02 2.27 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.37 18.13 5.92 -92.71 -0.55 17.58 16 47 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -63.61 378.03 2.29 -61.32 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.44 Total: 33.95 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.89 Total: 16.30 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -7.01 Total: -137.91 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -63.61 2.29 -61.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036209187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.935 kcal (2) G-P(sol) polarization free energy of solvation -63.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds