Wall clock time and date at job start Tue Mar 31 2020 17:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.52533 * 2 1 4 4 C 1.53200 * 109.49691 * 239.92328 * 2 1 3 5 5 N 1.46916 * 108.77388 * 185.41018 * 4 2 1 6 6 C 1.34774 * 120.63534 * 233.62624 * 5 4 2 7 7 O 1.21556 * 119.99328 * 355.95201 * 6 5 4 8 8 C 1.47831 * 120.00726 * 175.94719 * 6 5 4 9 9 C 1.39970 * 120.93679 * 54.02740 * 8 6 5 10 10 N 1.32129 * 118.92614 * 179.71974 * 9 8 6 11 11 C 1.31892 * 120.95910 * 0.56980 * 10 9 8 12 12 N 1.31848 * 122.10038 * 359.70740 * 11 10 9 13 13 C 1.32165 * 120.96568 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.53651 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49989 * 13.47726 * 14 13 12 16 16 C 1.53001 * 117.49710 * 304.81626 * 14 13 12 17 17 C 1.46929 * 118.73813 * 53.61166 * 5 4 2 18 18 C 1.53191 * 108.77664 * 306.38519 * 17 5 4 19 19 C 1.53036 * 109.49848 * 120.08417 * 2 1 3 20 20 H 1.09005 * 109.45923 * 61.29787 * 19 2 1 21 21 N 1.46496 * 109.46174 * 301.33884 * 19 2 1 22 22 C 1.36938 * 120.00171 * 154.93281 * 21 19 2 23 23 H 1.08003 * 119.99711 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00148 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99979 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99783 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46931 * 89.99700 * 26 24 22 28 28 H 1.48501 * 109.46987 * 209.99824 * 26 24 22 29 29 H 1.48498 * 109.47201 * 329.99837 * 26 24 22 30 30 H 1.09000 * 109.46826 * 299.91304 * 1 2 3 31 31 H 1.08994 * 109.47269 * 59.91849 * 1 2 3 32 32 H 1.09004 * 109.46749 * 179.91564 * 1 2 3 33 33 H 1.08998 * 109.58425 * 65.62054 * 4 2 1 34 34 H 1.08999 * 109.70023 * 305.27093 * 4 2 1 35 35 H 1.08004 * 120.53635 * 359.97438 * 9 8 6 36 36 H 1.08005 * 118.94511 * 179.72189 * 11 10 9 37 37 H 1.08999 * 115.54917 * 159.15231 * 14 13 12 38 38 H 1.08995 * 117.49879 * 359.97438 * 15 14 13 39 39 H 1.08996 * 117.49971 * 145.03003 * 15 14 13 40 40 H 1.08994 * 117.50336 * 214.98466 * 16 14 13 41 41 H 1.09006 * 117.49914 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.58846 * 186.60239 * 17 5 4 43 43 H 1.08999 * 109.59183 * 66.17807 * 17 5 4 44 44 H 1.08994 * 109.49616 * 294.68836 * 18 17 5 45 45 H 1.08997 * 109.52156 * 174.60040 * 18 17 5 46 46 H 0.97004 * 119.99729 * 334.92681 * 21 19 2 47 47 H 0.97006 * 119.99994 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5045 -0.8290 -1.1697 6 6 4.2811 -0.3855 -2.1780 7 8 3.7710 0.0395 -3.1962 8 6 5.7532 -0.4157 -2.0457 9 6 6.4219 -1.6005 -1.7166 10 7 7.7391 -1.5836 -1.6141 11 6 8.4203 -0.4706 -1.8061 12 7 7.8303 0.6681 -2.1120 13 6 6.5169 0.7404 -2.2406 14 6 5.8526 2.0471 -2.5901 15 6 6.7469 3.1821 -3.0929 16 6 6.1409 3.2494 -1.6888 17 6 4.1053 -1.4267 0.0306 18 6 3.5709 -0.6951 1.2659 19 6 2.0408 -0.7231 1.2483 20 1 1.6967 -1.7574 1.2351 21 7 1.5266 -0.0531 2.4452 22 6 1.3952 -0.7499 3.6168 23 1 1.6703 -1.7934 3.6582 24 6 0.9084 -0.1149 4.7511 25 7 0.7826 -0.7844 5.8773 26 14 0.4318 1.6899 4.6792 27 1 -0.9992 1.8093 4.3010 28 1 0.6455 2.3117 6.0108 29 1 1.2704 2.3834 3.6687 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7637 -0.1578 -2.1389 34 1 1.6054 -1.7215 -1.3007 35 1 5.8705 -2.5146 -1.5530 36 1 9.4959 -0.4929 -1.7097 37 1 4.8531 1.9668 -3.0175 38 1 7.8159 2.9838 -3.1705 39 1 6.3357 3.8488 -3.8508 40 1 5.3314 3.9603 -1.5236 41 1 6.8115 3.0953 -0.8434 42 1 5.1896 -1.3245 -0.0139 43 1 3.8376 -2.4818 0.0865 44 1 3.9160 0.3388 1.2540 45 1 3.9335 -1.1894 2.1671 46 1 1.2792 0.8841 2.4079 47 1 0.4428 -0.3405 6.6701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036277266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:55 Heat of formation + Delta-G solvation = 57.518861 kcal Electronic energy + Delta-G solvation = -29027.392706 eV Core-core repulsion = 25211.607891 eV Total energy + Delta-G solvation = -3815.784815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73380 -39.96404 -37.95657 -37.43523 -34.93948 -33.75754 -33.21067 -32.17189 -31.63855 -29.93843 -27.03541 -25.87613 -25.61188 -24.54239 -22.69186 -22.58477 -21.72362 -21.50084 -20.45671 -19.53074 -18.28679 -17.69042 -17.34836 -17.14585 -16.30167 -15.65951 -15.25810 -15.07910 -14.71549 -14.50226 -14.40247 -14.19021 -13.95000 -13.80873 -13.41102 -13.07337 -12.59091 -12.53868 -12.29182 -12.15877 -11.91292 -11.86991 -11.82067 -11.59446 -11.51996 -11.11538 -10.99021 -10.82213 -10.76239 -10.63570 -10.49382 -10.30220 -9.99736 -9.86921 -9.64638 -9.61706 -9.58599 -8.99481 -8.71466 -7.34498 -5.83847 -3.19721 0.27106 0.64836 2.37742 2.80524 3.22945 3.31787 3.34648 3.40552 3.58349 3.73992 3.77632 3.93989 4.17183 4.52639 4.54398 4.70811 4.73910 4.79545 4.84962 4.94637 5.00148 5.06497 5.13799 5.34561 5.40055 5.42086 5.42949 5.53297 5.58051 5.59302 5.73520 5.84284 5.86750 5.91221 5.93535 5.97610 6.00924 6.17616 6.19657 6.28334 6.38992 6.55130 6.60172 6.67074 6.84757 7.22010 7.68161 7.90875 7.91269 8.35117 9.13051 9.85826 10.05335 11.34359 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.003405 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.673772 B = 8220.360477 C = 8256.789876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.069 0.931 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.573 3.427 7 O -0.534 6.534 8 C -0.226 4.226 9 C 0.183 3.817 10 N -0.524 5.524 11 C 0.312 3.688 12 N -0.521 5.521 13 C 0.257 3.743 14 C -0.138 4.138 15 C -0.149 4.149 16 C -0.152 4.152 17 C 0.100 3.900 18 C -0.151 4.151 19 C 0.189 3.811 20 H 0.059 0.941 21 N -0.744 5.744 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.932 5.932 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.175 0.825 36 H 0.201 0.799 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 2.308 -18.274 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.359 3.641 7 O -0.412 6.412 8 C -0.233 4.233 9 C 0.017 3.983 10 N -0.237 5.237 11 C 0.025 3.975 12 N -0.234 5.234 13 C 0.111 3.889 14 C -0.157 4.157 15 C -0.187 4.187 16 C -0.189 4.189 17 C -0.023 4.023 18 C -0.192 4.192 19 C 0.079 3.921 20 H 0.077 0.923 21 N -0.386 5.386 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.192 0.808 36 H 0.218 0.782 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.194 0.806 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.097 2.306 -18.509 22.231 hybrid contribution -1.094 1.139 0.279 1.604 sum 11.002 3.445 -18.230 21.570 Atomic orbital electron populations 1.21667 0.93913 1.02277 1.01643 1.21799 0.96719 1.00069 0.94815 0.91249 1.21761 0.77646 1.01361 0.99299 1.48107 1.07334 1.59453 1.17759 1.17778 0.85267 0.77738 0.83345 1.90767 1.74503 1.47226 1.28680 1.21477 0.96406 0.97162 1.08267 1.23493 0.90274 0.96983 0.87566 1.68468 1.08104 1.30609 1.16548 1.25159 1.01372 0.82627 0.88304 1.68199 1.10439 1.29420 1.15371 1.20783 0.88416 0.93189 0.86495 1.21283 1.01306 0.85585 1.07509 1.22977 0.99834 0.98780 0.97088 1.23005 1.03443 0.97842 0.94647 1.22090 0.97695 0.97831 0.84699 1.22656 1.00067 1.00415 0.96105 1.20167 0.90307 0.96150 0.85463 0.92334 1.42767 1.78143 1.10061 1.07640 1.19045 1.36565 0.95693 0.86119 0.89176 1.24649 1.01255 0.97359 0.95596 1.69693 1.51938 1.35708 1.00653 0.86607 0.78603 0.86788 0.76845 1.21004 1.21759 1.20416 0.91387 0.93461 0.92432 0.89040 0.90892 0.80794 0.78211 0.84354 0.87362 0.88169 0.87812 0.88325 0.90722 0.90512 0.92317 0.89921 0.80609 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.03 37.16 0.34 -1.59 16 2 C -0.11 -1.64 2.46 -90.50 -0.22 -1.86 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.53 5.71 -3.71 -0.02 1.50 16 5 N -0.60 -7.45 2.97 -173.89 -0.52 -7.97 16 6 C 0.57 7.66 6.64 -12.34 -0.08 7.58 16 7 O -0.53 -8.40 14.81 5.32 0.08 -8.32 16 8 C -0.23 -2.74 4.90 -104.69 -0.51 -3.26 16 9 C 0.18 1.94 8.75 -16.78 -0.15 1.80 16 10 N -0.52 -5.63 10.42 -14.24 -0.15 -5.78 16 11 C 0.31 3.07 12.27 -92.02 -1.13 1.94 16 12 N -0.52 -5.87 9.54 -10.48 -0.10 -5.97 16 13 C 0.26 3.14 6.50 -81.82 -0.53 2.61 16 14 C -0.14 -1.58 5.61 -91.77 -0.51 -2.09 16 15 C -0.15 -1.39 10.04 -26.69 -0.27 -1.65 16 16 C -0.15 -1.50 10.24 -26.69 -0.27 -1.77 16 17 C 0.10 1.19 5.58 -3.71 -0.02 1.17 16 18 C -0.15 -2.33 5.66 -26.61 -0.15 -2.48 16 19 C 0.19 3.23 2.19 -67.89 -0.15 3.08 16 20 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 21 N -0.74 -16.21 4.21 -53.38 -0.22 -16.44 16 22 C -0.24 -6.47 10.41 -15.06 -0.16 -6.63 16 23 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 25 N -0.93 -28.39 13.97 55.49 0.78 -27.62 16 26 Si 0.88 21.42 27.74 -169.99 -4.71 16.71 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 30 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.18 7.03 -51.93 -0.36 0.81 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.18 1.45 7.43 -52.48 -0.39 1.06 16 36 H 0.20 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.14 1.76 6.16 -51.93 -0.32 1.44 16 38 H 0.11 1.01 7.66 -51.93 -0.40 0.61 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.82 4.73 -51.93 -0.25 0.58 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.36 7.92 5.37 -40.82 -0.22 7.70 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -31.86 375.54 -10.11 -41.97 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.98 Total: 9.30 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.94 Total: -1.54 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.21 Total: -63.77 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.08 Total: -8.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.86 -10.11 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036277266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.487 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds