Wall clock time and date at job start Tue Mar 31 2020 17:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.52533 * 2 1 4 4 C 1.53200 * 109.49691 * 239.92328 * 2 1 3 5 5 N 1.46916 * 108.77388 * 185.41018 * 4 2 1 6 6 C 1.34774 * 120.63534 * 233.62624 * 5 4 2 7 7 O 1.21556 * 119.99328 * 355.95201 * 6 5 4 8 8 C 1.47831 * 120.00726 * 175.94719 * 6 5 4 9 9 C 1.39970 * 120.93679 * 54.02740 * 8 6 5 10 10 N 1.32129 * 118.92614 * 179.71974 * 9 8 6 11 11 C 1.31892 * 120.95910 * 0.56980 * 10 9 8 12 12 N 1.31848 * 122.10038 * 359.70740 * 11 10 9 13 13 C 1.32165 * 120.96568 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.53651 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49989 * 13.47726 * 14 13 12 16 16 C 1.53001 * 117.49710 * 304.81626 * 14 13 12 17 17 C 1.46929 * 118.73813 * 53.61166 * 5 4 2 18 18 C 1.53191 * 108.77664 * 306.38519 * 17 5 4 19 19 C 1.53036 * 109.49848 * 120.08417 * 2 1 3 20 20 H 1.09005 * 109.45923 * 61.29787 * 19 2 1 21 21 N 1.46496 * 109.46174 * 301.33884 * 19 2 1 22 22 C 1.36938 * 120.00171 * 154.93281 * 21 19 2 23 23 H 1.08003 * 119.99711 * 359.97438 * 22 21 19 24 24 C 1.38813 * 120.00148 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99979 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99783 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46931 * 89.99700 * 26 24 22 28 28 H 1.48501 * 109.46987 * 209.99824 * 26 24 22 29 29 H 1.48498 * 109.47201 * 329.99837 * 26 24 22 30 30 H 1.09000 * 109.46826 * 299.91304 * 1 2 3 31 31 H 1.08994 * 109.47269 * 59.91849 * 1 2 3 32 32 H 1.09004 * 109.46749 * 179.91564 * 1 2 3 33 33 H 1.08998 * 109.58425 * 65.62054 * 4 2 1 34 34 H 1.08999 * 109.70023 * 305.27093 * 4 2 1 35 35 H 1.08004 * 120.53635 * 359.97438 * 9 8 6 36 36 H 1.08005 * 118.94511 * 179.72189 * 11 10 9 37 37 H 1.08999 * 115.54917 * 159.15231 * 14 13 12 38 38 H 1.08995 * 117.49879 * 359.97438 * 15 14 13 39 39 H 1.08996 * 117.49971 * 145.03003 * 15 14 13 40 40 H 1.08994 * 117.50336 * 214.98466 * 16 14 13 41 41 H 1.09006 * 117.49914 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.58846 * 186.60239 * 17 5 4 43 43 H 1.08999 * 109.59183 * 66.17807 * 17 5 4 44 44 H 1.08994 * 109.49616 * 294.68836 * 18 17 5 45 45 H 1.08997 * 109.52156 * 174.60040 * 18 17 5 46 46 H 0.97004 * 119.99729 * 334.92681 * 21 19 2 47 47 H 0.97006 * 119.99994 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5045 -0.8290 -1.1697 6 6 4.2811 -0.3855 -2.1780 7 8 3.7710 0.0395 -3.1962 8 6 5.7532 -0.4157 -2.0457 9 6 6.4219 -1.6005 -1.7166 10 7 7.7391 -1.5836 -1.6141 11 6 8.4203 -0.4706 -1.8061 12 7 7.8303 0.6681 -2.1120 13 6 6.5169 0.7404 -2.2406 14 6 5.8526 2.0471 -2.5901 15 6 6.7469 3.1821 -3.0929 16 6 6.1409 3.2494 -1.6888 17 6 4.1053 -1.4267 0.0306 18 6 3.5709 -0.6951 1.2659 19 6 2.0408 -0.7231 1.2483 20 1 1.6967 -1.7574 1.2351 21 7 1.5266 -0.0531 2.4452 22 6 1.3952 -0.7499 3.6168 23 1 1.6703 -1.7934 3.6582 24 6 0.9084 -0.1149 4.7511 25 7 0.7826 -0.7844 5.8773 26 14 0.4318 1.6899 4.6792 27 1 -0.9992 1.8093 4.3010 28 1 0.6455 2.3117 6.0108 29 1 1.2704 2.3834 3.6687 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7637 -0.1578 -2.1389 34 1 1.6054 -1.7215 -1.3007 35 1 5.8705 -2.5146 -1.5530 36 1 9.4959 -0.4929 -1.7097 37 1 4.8531 1.9668 -3.0175 38 1 7.8159 2.9838 -3.1705 39 1 6.3357 3.8488 -3.8508 40 1 5.3314 3.9603 -1.5236 41 1 6.8115 3.0953 -0.8434 42 1 5.1896 -1.3245 -0.0139 43 1 3.8376 -2.4818 0.0865 44 1 3.9160 0.3388 1.2540 45 1 3.9335 -1.1894 2.1671 46 1 1.2792 0.8841 2.4079 47 1 0.4428 -0.3405 6.6701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036277266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:53 Heat of formation + Delta-G solvation = 38.867450 kcal Electronic energy + Delta-G solvation = -29028.201492 eV Core-core repulsion = 25211.607891 eV Total energy + Delta-G solvation = -3816.593601 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.59697 -41.00819 -39.14371 -38.27824 -36.36005 -34.84152 -34.35197 -33.45088 -32.94885 -31.54736 -28.05939 -27.10352 -26.53162 -25.73075 -24.13351 -23.33782 -23.07571 -22.34222 -21.66847 -20.75846 -19.48207 -19.13749 -18.36179 -17.99669 -17.37072 -16.79922 -16.43786 -16.19877 -16.04455 -15.67153 -15.44675 -15.23424 -15.10921 -14.89834 -14.71793 -14.50462 -14.13282 -13.74341 -13.50148 -13.15669 -13.08031 -12.95747 -12.88645 -12.77517 -12.61943 -12.47324 -12.37501 -12.17351 -12.02496 -11.88647 -11.77468 -11.57056 -11.34577 -11.19510 -11.04594 -10.89910 -10.44764 -10.43912 -9.79408 -9.27938 -8.00271 -5.32189 -0.56113 -0.18069 1.36726 1.37518 1.39168 1.46241 1.81345 2.42705 2.48879 2.78894 2.94242 3.03756 3.14883 3.23631 3.31772 3.52228 3.70805 3.74836 3.88710 3.91332 3.97903 3.99290 4.03875 4.18508 4.29277 4.31497 4.45394 4.54748 4.60973 4.69334 4.71732 4.74381 4.80771 4.85365 4.88605 4.99250 5.03895 5.13241 5.17948 5.21996 5.23478 5.36404 5.41562 5.56637 5.72834 5.80338 6.19318 6.23980 6.87615 6.89234 7.10174 7.87041 8.04790 9.21302 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.003405 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.673772 B = 8220.360477 C = 8256.789876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 H 0.062 0.938 4 C 0.127 3.873 5 N -0.593 5.593 6 C 0.578 3.422 7 O -0.560 6.560 8 C -0.244 4.244 9 C 0.188 3.812 10 N -0.533 5.533 11 C 0.313 3.687 12 N -0.529 5.529 13 C 0.247 3.753 14 C -0.157 4.157 15 C -0.134 4.134 16 C -0.148 4.148 17 C 0.110 3.890 18 C -0.143 4.143 19 C 0.183 3.817 20 H 0.054 0.946 21 N -0.747 5.747 22 C -0.219 4.219 23 H 0.063 0.937 24 C -0.061 4.061 25 N -0.984 5.984 26 Si 0.945 3.055 27 H -0.279 1.279 28 H -0.301 1.301 29 H -0.257 1.257 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.196 0.804 36 H 0.235 0.765 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.362 0.638 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.423 2.876 -20.302 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 H 0.081 0.919 4 C 0.004 3.996 5 N -0.324 5.324 6 C 0.365 3.635 7 O -0.440 6.440 8 C -0.252 4.252 9 C 0.021 3.979 10 N -0.246 5.246 11 C 0.027 3.973 12 N -0.243 5.243 13 C 0.102 3.898 14 C -0.176 4.176 15 C -0.171 4.171 16 C -0.186 4.186 17 C -0.013 4.013 18 C -0.184 4.184 19 C 0.075 3.925 20 H 0.072 0.928 21 N -0.389 5.389 22 C -0.350 4.350 23 H 0.080 0.920 24 C -0.252 4.252 25 N -0.635 5.635 26 Si 0.774 3.226 27 H -0.205 1.205 28 H -0.228 1.228 29 H -0.182 1.182 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.213 0.787 36 H 0.251 0.749 37 H 0.141 0.859 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.195 0.805 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.153 2.875 -20.600 24.609 hybrid contribution -1.337 0.885 0.842 1.811 sum 11.816 3.760 -19.757 23.327 Atomic orbital electron populations 1.21640 0.93465 1.02533 1.01649 1.21667 0.97039 0.99482 0.94120 0.91915 1.21723 0.77736 1.02078 0.98026 1.48102 1.07319 1.59276 1.17675 1.17902 0.85764 0.76925 0.82922 1.90751 1.75126 1.48327 1.29755 1.21432 0.95655 0.97978 1.10113 1.23844 0.90451 0.97161 0.86424 1.68570 1.08102 1.30935 1.17027 1.25894 1.02789 0.81959 0.86626 1.68269 1.09959 1.30101 1.16010 1.20968 0.88970 0.93509 0.86399 1.21248 1.01128 0.86185 1.09008 1.23044 0.99548 0.97523 0.97027 1.23033 1.03620 0.97125 0.94802 1.22040 0.98275 0.98287 0.82651 1.22452 0.98500 1.00174 0.97261 1.20417 0.91330 0.95867 0.84928 0.92768 1.42789 1.78470 1.10030 1.07646 1.19016 1.33790 0.94676 0.87521 0.91950 1.25364 1.02699 1.01740 0.95408 1.69863 1.54493 1.37628 1.01518 0.85556 0.78652 0.81747 0.76678 1.20510 1.22776 1.18194 0.93736 0.91060 0.92091 0.88870 0.89147 0.78690 0.74921 0.85931 0.87324 0.86595 0.86960 0.88813 0.89422 0.88314 0.93307 0.91768 0.80485 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.03 71.98 0.65 -2.90 16 2 C -0.10 -2.79 2.46 -10.71 -0.03 -2.81 16 3 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.13 2.89 5.71 86.37 0.49 3.38 16 5 N -0.59 -13.64 2.97 -822.34 -2.44 -16.08 16 6 C 0.58 14.57 6.64 86.78 0.58 15.15 16 7 O -0.56 -17.03 14.81 -3.89 -0.06 -17.08 16 8 C -0.24 -5.56 4.90 -19.91 -0.10 -5.65 16 9 C 0.19 3.56 8.75 85.07 0.74 4.31 16 10 N -0.53 -10.19 10.42 -198.97 -2.07 -12.27 16 11 C 0.31 5.42 12.27 180.84 2.22 7.64 16 12 N -0.53 -11.02 9.54 -187.06 -1.78 -12.80 16 13 C 0.25 5.73 6.50 42.92 0.28 6.01 16 14 C -0.16 -3.44 5.61 -11.54 -0.06 -3.51 16 15 C -0.13 -2.28 10.04 30.62 0.31 -1.97 16 16 C -0.15 -2.74 10.24 30.62 0.31 -2.43 16 17 C 0.11 2.39 5.58 86.36 0.48 2.87 16 18 C -0.14 -4.26 5.66 30.67 0.17 -4.08 16 19 C 0.18 6.06 2.19 45.02 0.10 6.16 16 20 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 21 N -0.75 -32.20 4.21 -322.81 -1.36 -33.56 16 22 C -0.22 -11.73 10.41 84.03 0.87 -10.86 16 23 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 24 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 25 N -0.98 -61.61 13.97 21.65 0.30 -61.31 16 26 Si 0.95 44.57 27.74 68.60 1.90 46.47 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 29 H -0.26 -11.05 6.52 99.48 0.65 -10.41 16 30 H 0.04 1.38 7.36 -2.39 -0.02 1.36 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.09 2.18 7.03 -2.39 -0.02 2.17 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.20 2.68 7.43 -2.91 -0.02 2.66 16 36 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.12 3.09 6.16 -2.39 -0.01 3.08 16 38 H 0.11 1.85 7.66 -2.39 -0.02 1.83 16 39 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.09 1.73 4.73 -2.39 -0.01 1.72 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 46 H 0.36 15.47 5.37 -92.71 -0.50 14.97 16 47 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -69.94 375.54 2.41 -67.53 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.43 Total: 30.79 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 7.49 Total: 8.31 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -7.36 Total: -136.02 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.06 Total: -17.08 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Total: -69.94 2.41 -67.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036277266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.395 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds