Wall clock time and date at job start Tue Mar 31 2020 17:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.49992 * 2 1 4 4 C 1.52764 * 109.58990 * 240.04271 * 2 1 3 5 5 N 1.46922 * 109.00989 * 185.53568 * 4 2 1 6 6 C 1.34773 * 120.63400 * 233.58567 * 5 4 2 7 7 O 1.21558 * 119.99565 * 5.42989 * 6 5 4 8 8 C 1.47831 * 120.00256 * 185.42726 * 6 5 4 9 9 C 1.39970 * 120.93575 * 47.79657 * 8 6 5 10 10 N 1.32135 * 118.91616 * 180.27551 * 9 8 6 11 11 C 1.31883 * 120.97036 * 359.74423 * 10 9 8 12 12 N 1.31854 * 122.09445 * 0.02562 * 11 10 9 13 13 C 1.32162 * 120.96749 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.53577 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49800 * 64.40597 * 14 13 12 16 16 C 1.52996 * 60.00228 * 252.50950 * 15 14 13 17 17 C 1.46929 * 118.73566 * 53.31230 * 5 4 2 18 18 C 1.53195 * 108.77542 * 306.64207 * 17 5 4 19 19 C 1.53034 * 109.31028 * 54.63798 * 18 17 5 20 20 H 1.09006 * 109.45907 * 178.61297 * 19 18 17 21 21 N 1.46493 * 109.46448 * 58.65755 * 19 18 17 22 22 C 1.36936 * 120.00430 * 84.99570 * 21 19 18 23 23 H 1.08007 * 119.99877 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00288 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00193 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00306 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46965 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47475 * 119.99816 * 26 24 22 29 29 H 1.48499 * 109.47323 * 240.00026 * 26 24 22 30 30 H 1.09005 * 109.46661 * 299.93902 * 1 2 3 31 31 H 1.08996 * 109.47134 * 59.93474 * 1 2 3 32 32 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.50779 * 65.65057 * 4 2 1 34 34 H 1.09002 * 109.42963 * 305.37519 * 4 2 1 35 35 H 1.08000 * 120.54108 * 0.02562 * 9 8 6 36 36 H 1.08003 * 118.94915 * 180.02562 * 11 10 9 37 37 H 1.09003 * 115.56314 * 210.09310 * 14 13 12 38 38 H 1.09005 * 117.49851 * 145.02344 * 15 14 13 39 39 H 1.09001 * 117.50081 * 0.02562 * 15 14 13 40 40 H 1.08997 * 117.50263 * 107.48749 * 16 15 14 41 41 H 1.09002 * 117.50293 * 252.49018 * 16 15 14 42 42 H 1.08997 * 109.59105 * 66.43258 * 17 5 4 43 43 H 1.09000 * 109.58607 * 186.85809 * 17 5 4 44 44 H 1.09000 * 109.49670 * 174.58610 * 18 17 5 45 45 H 1.09002 * 109.49761 * 294.68409 * 18 17 5 46 46 H 0.97002 * 120.00201 * 264.99875 * 21 19 18 47 47 H 0.96999 * 120.00643 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0422 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1690 6 6 4.2819 -0.3847 -2.1772 7 8 3.7813 0.2005 -3.1177 8 6 5.7425 -0.6096 -2.1392 9 6 6.2687 -1.8707 -1.8362 10 7 7.5807 -2.0256 -1.8079 11 6 8.3890 -1.0156 -2.0645 12 7 7.9358 0.1871 -2.3588 13 6 6.6379 0.4312 -2.4093 14 6 6.1306 1.8097 -2.7459 15 6 6.4358 2.3530 -4.1433 16 6 7.1679 2.9200 -2.9253 17 6 4.1059 -1.4256 0.0316 18 6 3.5708 -0.6940 1.2666 19 6 2.0409 -0.7228 1.2485 20 1 1.6577 -0.2242 2.1390 21 7 1.5790 -2.1129 1.2311 22 6 1.4475 -2.8055 2.4051 23 1 1.6839 -2.3268 3.3439 24 6 1.0103 -4.1229 2.3885 25 7 0.7227 -4.7065 1.2444 26 14 0.8316 -5.0680 3.9898 27 1 1.2155 -4.1929 5.1265 28 1 -0.5792 -5.5015 4.1541 29 1 1.7159 -6.2607 3.9621 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7652 -0.1498 -2.1345 34 1 1.6031 -1.7151 -1.2972 35 1 5.6132 -2.7026 -1.6250 36 1 9.4561 -1.1790 -2.0327 37 1 5.1747 2.0815 -2.2980 38 1 5.6808 2.9823 -4.6146 39 1 7.0032 1.7132 -4.8192 40 1 8.2173 2.6533 -2.7997 41 1 6.8949 3.9224 -2.5955 42 1 3.8387 -2.4808 0.0877 43 1 5.1902 -1.3230 -0.0127 44 1 3.9334 -1.1884 2.1678 45 1 3.9155 0.3400 1.2546 46 1 1.3663 -2.5428 0.3880 47 1 0.4168 -5.6269 1.2327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036277268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:02 Heat of formation + Delta-G solvation = 55.777336 kcal Electronic energy + Delta-G solvation = -29240.479694 eV Core-core repulsion = 25424.619360 eV Total energy + Delta-G solvation = -3815.860334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.57758 -39.80765 -37.84466 -37.32960 -34.49122 -33.57925 -33.07669 -32.04200 -31.47279 -29.25158 -26.82362 -25.70243 -25.46116 -24.31103 -23.51394 -22.49661 -21.78376 -21.40599 -20.24105 -18.49366 -18.10846 -17.39785 -17.25874 -16.88445 -16.06928 -15.61389 -15.02100 -14.87861 -14.49301 -14.42426 -14.30321 -14.05599 -13.82999 -13.71656 -13.35772 -13.00777 -12.59643 -12.28517 -12.26832 -11.80941 -11.73668 -11.69322 -11.53224 -11.43603 -11.23471 -10.96513 -10.85603 -10.68906 -10.59087 -10.55893 -10.38999 -10.20186 -9.90409 -9.76608 -9.61388 -9.50987 -9.44764 -8.99050 -8.36302 -7.03791 -5.84511 -3.13243 0.39018 0.78659 2.65875 3.04156 3.38063 3.38867 3.44662 3.46448 3.67545 3.80123 3.91773 4.13405 4.40162 4.52955 4.63838 4.83910 4.84935 4.89815 5.05571 5.14239 5.23640 5.28980 5.43640 5.49293 5.50930 5.54275 5.64684 5.67317 5.73265 5.84287 5.88687 5.97930 5.98933 6.00400 6.08817 6.14851 6.24836 6.31055 6.42787 6.52374 6.60453 6.68841 6.69360 6.84578 6.91927 7.51525 7.64546 7.80773 8.16053 8.33855 9.45898 10.01394 10.36569 11.37794 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003526 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.771766 B = 7938.674140 C = 8942.401991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.566 3.434 7 O -0.533 6.533 8 C -0.223 4.223 9 C 0.187 3.813 10 N -0.523 5.523 11 C 0.310 3.690 12 N -0.522 5.522 13 C 0.253 3.747 14 C -0.120 4.120 15 C -0.144 4.144 16 C -0.158 4.158 17 C 0.110 3.890 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.177 0.823 36 H 0.200 0.800 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.489 12.267 -7.491 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.323 5.323 6 C 0.352 3.648 7 O -0.411 6.411 8 C -0.231 4.231 9 C 0.021 3.979 10 N -0.237 5.237 11 C 0.022 3.978 12 N -0.236 5.236 13 C 0.107 3.893 14 C -0.139 4.139 15 C -0.181 4.181 16 C -0.195 4.195 17 C -0.013 4.013 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.194 0.806 36 H 0.217 0.783 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.186 12.328 -7.762 18.993 hybrid contribution -0.988 -0.908 0.822 1.574 sum 11.198 11.420 -6.940 17.435 Atomic orbital electron populations 1.21664 0.94036 1.03260 1.00525 1.21627 0.96639 0.98899 0.95660 0.91606 1.21635 0.77760 1.01902 0.98934 1.48060 1.07314 1.59196 1.17685 1.17770 0.85026 0.79148 0.82861 1.90773 1.74394 1.41593 1.34354 1.21551 0.96453 0.97128 1.07931 1.23626 0.91753 0.95455 0.87100 1.68479 1.04511 1.34573 1.16138 1.25146 1.01044 0.83106 0.88460 1.68185 1.15113 1.24050 1.16285 1.20797 0.87753 0.93971 0.86778 1.20924 1.00806 0.89025 1.03108 1.22884 1.02832 1.02621 0.89812 1.23021 0.98299 0.96717 1.01512 1.21902 0.96167 0.99312 0.83872 1.22525 1.00634 0.98591 0.97262 1.20213 0.90590 0.87438 0.94939 0.92989 1.42475 1.78999 1.07643 1.06959 1.19255 1.37299 0.93850 0.86557 0.91200 1.24695 1.02173 0.97163 0.96606 1.69648 1.51700 1.13008 1.23607 0.86179 0.77311 0.79990 0.83042 1.20641 1.21959 1.21933 0.92746 0.93700 0.90976 0.89510 0.90276 0.80589 0.78324 0.85581 0.87876 0.88729 0.87302 0.88317 0.89188 0.91718 0.90584 0.93348 0.78109 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.06 37.16 0.34 -1.75 16 2 C -0.11 -1.67 2.65 -90.72 -0.24 -1.92 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.89 5.41 -3.93 -0.02 1.87 16 5 N -0.59 -9.02 2.98 -174.15 -0.52 -9.54 16 6 C 0.57 8.75 6.59 -12.34 -0.08 8.67 16 7 O -0.53 -9.35 15.17 5.32 0.08 -9.27 16 8 C -0.22 -3.09 4.86 -104.69 -0.51 -3.60 16 9 C 0.19 2.43 8.85 -16.77 -0.15 2.29 16 10 N -0.52 -6.58 10.42 -14.24 -0.15 -6.73 16 11 C 0.31 3.40 12.27 -92.03 -1.13 2.27 16 12 N -0.52 -6.32 9.45 -10.48 -0.10 -6.42 16 13 C 0.25 3.32 6.53 -81.82 -0.53 2.79 16 14 C -0.12 -1.43 4.94 -91.77 -0.45 -1.88 16 15 C -0.14 -1.47 10.23 -26.73 -0.27 -1.74 16 16 C -0.16 -1.50 10.04 -26.73 -0.27 -1.76 16 17 C 0.11 1.67 5.04 -3.71 -0.02 1.65 16 18 C -0.15 -2.38 5.78 -26.61 -0.15 -2.53 16 19 C 0.18 3.18 2.53 -67.89 -0.17 3.00 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -15.79 3.64 -53.39 -0.19 -15.99 16 22 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 23 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -26.31 13.06 55.49 0.72 -25.58 16 26 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 33 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 34 H 0.08 1.38 6.64 -51.93 -0.34 1.03 16 35 H 0.18 2.14 7.36 -52.49 -0.39 1.76 16 36 H 0.20 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.13 1.61 7.23 -51.93 -0.38 1.24 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.11 1.05 7.59 -51.93 -0.39 0.65 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 43 H 0.06 0.90 5.12 -51.93 -0.27 0.63 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.38 9.02 5.94 -40.82 -0.24 8.78 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -29.26 375.36 -10.37 -39.63 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.94 Total: 11.10 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.91 Total: 0.80 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.24 Total: -64.26 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.26 -10.37 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036277268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.410 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds