Wall clock time and date at job start Tue Mar 31 2020 17:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.49992 * 2 1 4 4 C 1.52764 * 109.58990 * 240.04271 * 2 1 3 5 5 N 1.46922 * 109.00989 * 185.53568 * 4 2 1 6 6 C 1.34773 * 120.63400 * 233.58567 * 5 4 2 7 7 O 1.21558 * 119.99565 * 5.42989 * 6 5 4 8 8 C 1.47831 * 120.00256 * 185.42726 * 6 5 4 9 9 C 1.39970 * 120.93575 * 47.79657 * 8 6 5 10 10 N 1.32135 * 118.91616 * 180.27551 * 9 8 6 11 11 C 1.31883 * 120.97036 * 359.74423 * 10 9 8 12 12 N 1.31854 * 122.09445 * 0.02562 * 11 10 9 13 13 C 1.32162 * 120.96749 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.53577 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49800 * 64.40597 * 14 13 12 16 16 C 1.52996 * 60.00228 * 252.50950 * 15 14 13 17 17 C 1.46929 * 118.73566 * 53.31230 * 5 4 2 18 18 C 1.53195 * 108.77542 * 306.64207 * 17 5 4 19 19 C 1.53034 * 109.31028 * 54.63798 * 18 17 5 20 20 H 1.09006 * 109.45907 * 178.61297 * 19 18 17 21 21 N 1.46493 * 109.46448 * 58.65755 * 19 18 17 22 22 C 1.36936 * 120.00430 * 84.99570 * 21 19 18 23 23 H 1.08007 * 119.99877 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00288 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00193 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00306 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46965 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47475 * 119.99816 * 26 24 22 29 29 H 1.48499 * 109.47323 * 240.00026 * 26 24 22 30 30 H 1.09005 * 109.46661 * 299.93902 * 1 2 3 31 31 H 1.08996 * 109.47134 * 59.93474 * 1 2 3 32 32 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.50779 * 65.65057 * 4 2 1 34 34 H 1.09002 * 109.42963 * 305.37519 * 4 2 1 35 35 H 1.08000 * 120.54108 * 0.02562 * 9 8 6 36 36 H 1.08003 * 118.94915 * 180.02562 * 11 10 9 37 37 H 1.09003 * 115.56314 * 210.09310 * 14 13 12 38 38 H 1.09005 * 117.49851 * 145.02344 * 15 14 13 39 39 H 1.09001 * 117.50081 * 0.02562 * 15 14 13 40 40 H 1.08997 * 117.50263 * 107.48749 * 16 15 14 41 41 H 1.09002 * 117.50293 * 252.49018 * 16 15 14 42 42 H 1.08997 * 109.59105 * 66.43258 * 17 5 4 43 43 H 1.09000 * 109.58607 * 186.85809 * 17 5 4 44 44 H 1.09000 * 109.49670 * 174.58610 * 18 17 5 45 45 H 1.09002 * 109.49761 * 294.68409 * 18 17 5 46 46 H 0.97002 * 120.00201 * 264.99875 * 21 19 18 47 47 H 0.96999 * 120.00643 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0422 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1690 6 6 4.2819 -0.3847 -2.1772 7 8 3.7813 0.2005 -3.1177 8 6 5.7425 -0.6096 -2.1392 9 6 6.2687 -1.8707 -1.8362 10 7 7.5807 -2.0256 -1.8079 11 6 8.3890 -1.0156 -2.0645 12 7 7.9358 0.1871 -2.3588 13 6 6.6379 0.4312 -2.4093 14 6 6.1306 1.8097 -2.7459 15 6 6.4358 2.3530 -4.1433 16 6 7.1679 2.9200 -2.9253 17 6 4.1059 -1.4256 0.0316 18 6 3.5708 -0.6940 1.2666 19 6 2.0409 -0.7228 1.2485 20 1 1.6577 -0.2242 2.1390 21 7 1.5790 -2.1129 1.2311 22 6 1.4475 -2.8055 2.4051 23 1 1.6839 -2.3268 3.3439 24 6 1.0103 -4.1229 2.3885 25 7 0.7227 -4.7065 1.2444 26 14 0.8316 -5.0680 3.9898 27 1 1.2155 -4.1929 5.1265 28 1 -0.5792 -5.5015 4.1541 29 1 1.7159 -6.2607 3.9621 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7652 -0.1498 -2.1345 34 1 1.6031 -1.7151 -1.2972 35 1 5.6132 -2.7026 -1.6250 36 1 9.4561 -1.1790 -2.0327 37 1 5.1747 2.0815 -2.2980 38 1 5.6808 2.9823 -4.6146 39 1 7.0032 1.7132 -4.8192 40 1 8.2173 2.6533 -2.7997 41 1 6.8949 3.9224 -2.5955 42 1 3.8387 -2.4808 0.0877 43 1 5.1902 -1.3230 -0.0127 44 1 3.9334 -1.1884 2.1678 45 1 3.9155 0.3400 1.2546 46 1 1.3663 -2.5428 0.3880 47 1 0.4168 -5.6269 1.2327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036277268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:00 Heat of formation + Delta-G solvation = 40.463246 kcal Electronic energy + Delta-G solvation = -29241.143763 eV Core-core repulsion = 25424.619360 eV Total energy + Delta-G solvation = -3816.524402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.58902 -41.03879 -39.14153 -38.22939 -35.95864 -34.80766 -34.34424 -33.25326 -32.89091 -30.95021 -28.01858 -26.98029 -26.50928 -25.66362 -25.11832 -23.25718 -23.11621 -22.32827 -21.45175 -19.87115 -19.31798 -19.03062 -18.35328 -17.93429 -17.30315 -16.60650 -16.52158 -16.02275 -15.98557 -15.74840 -15.53937 -15.14234 -15.06327 -14.89662 -14.74989 -14.36219 -14.21394 -13.61024 -13.17505 -13.06155 -12.98446 -12.88605 -12.80234 -12.68100 -12.55942 -12.43003 -12.34383 -12.06169 -11.97933 -11.92742 -11.58904 -11.48814 -11.38104 -11.16902 -10.96875 -10.82933 -10.49188 -10.41683 -9.68356 -8.91902 -7.88124 -5.14014 -0.58786 -0.19426 1.47181 1.49234 1.51520 1.59096 1.82970 2.46965 2.60297 2.78097 2.92055 3.02503 3.21998 3.27649 3.46057 3.71287 3.80684 3.86785 3.94461 3.95621 4.01846 4.07116 4.08173 4.25589 4.28678 4.36779 4.51340 4.57784 4.61833 4.70288 4.75300 4.83096 4.89814 4.91731 5.00860 5.05628 5.13151 5.16898 5.19873 5.25011 5.28099 5.29106 5.46552 5.58526 5.62744 5.72246 6.27329 6.33969 6.87005 6.93044 7.42142 8.17308 8.41307 9.34992 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003526 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.771766 B = 7938.674140 C = 8942.401991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.125 3.875 5 N -0.590 5.590 6 C 0.571 3.429 7 O -0.556 6.556 8 C -0.241 4.241 9 C 0.187 3.813 10 N -0.535 5.535 11 C 0.315 3.685 12 N -0.525 5.525 13 C 0.252 3.748 14 C -0.143 4.143 15 C -0.142 4.142 16 C -0.137 4.137 17 C 0.121 3.879 18 C -0.142 4.142 19 C 0.174 3.826 20 H 0.048 0.952 21 N -0.723 5.723 22 C -0.225 4.225 23 H 0.074 0.926 24 C -0.069 4.069 25 N -0.966 5.966 26 Si 0.959 3.041 27 H -0.268 1.268 28 H -0.301 1.301 29 H -0.299 1.299 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.178 0.822 36 H 0.238 0.762 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.375 0.625 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.282 14.196 -7.249 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.104 0.896 4 C 0.002 3.998 5 N -0.321 5.321 6 C 0.359 3.641 7 O -0.435 6.435 8 C -0.249 4.249 9 C 0.021 3.979 10 N -0.249 5.249 11 C 0.029 3.971 12 N -0.238 5.238 13 C 0.106 3.894 14 C -0.162 4.162 15 C -0.180 4.180 16 C -0.174 4.174 17 C -0.002 4.002 18 C -0.183 4.183 19 C 0.065 3.935 20 H 0.067 0.933 21 N -0.364 5.364 22 C -0.358 4.358 23 H 0.092 0.908 24 C -0.262 4.262 25 N -0.617 5.617 26 Si 0.791 3.209 27 H -0.193 1.193 28 H -0.228 1.228 29 H -0.226 1.226 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.195 0.805 36 H 0.254 0.746 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.209 0.791 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.008 14.303 -7.496 21.377 hybrid contribution -1.472 -1.415 0.705 2.160 sum 12.536 12.888 -6.791 19.219 Atomic orbital electron populations 1.21596 0.93800 1.01618 1.01876 1.21547 0.96757 0.99360 0.94119 0.89606 1.21511 0.78184 1.00774 0.99293 1.48025 1.07062 1.59189 1.17793 1.17955 0.85678 0.78350 0.82167 1.90752 1.75035 1.42685 1.35042 1.21420 0.95422 0.97910 1.10143 1.23670 0.92256 0.95224 0.86790 1.68558 1.04238 1.35262 1.16842 1.25956 1.02477 0.82301 0.86370 1.68296 1.14397 1.24510 1.16645 1.21036 0.88084 0.94296 0.85974 1.20950 1.01310 0.89359 1.04560 1.22951 1.03129 1.02496 0.89394 1.23090 0.97634 0.96674 0.99996 1.21732 0.97104 0.97674 0.83645 1.22402 0.98856 0.99905 0.97093 1.20416 0.91785 0.85323 0.95993 0.93348 1.42567 1.79061 1.09164 1.05630 1.19574 1.34706 0.93801 0.87679 0.90802 1.25323 1.03585 0.98378 0.98900 1.69787 1.53869 1.12804 1.25274 0.85271 0.76375 0.78668 0.80626 1.19274 1.22845 1.22644 0.92239 0.91515 0.94021 0.89145 0.92440 0.80538 0.74573 0.86737 0.86940 0.89119 0.87218 0.86411 0.91752 0.89981 0.91477 0.91085 0.79149 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.06 71.98 0.65 -3.24 16 2 C -0.10 -2.93 2.65 -10.86 -0.03 -2.96 16 3 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.12 3.92 5.41 86.22 0.47 4.39 16 5 N -0.59 -17.80 2.98 -823.15 -2.45 -20.25 16 6 C 0.57 17.39 6.59 86.78 0.57 17.97 16 7 O -0.56 -19.29 15.17 -3.90 -0.06 -19.35 16 8 C -0.24 -6.49 4.86 -19.91 -0.10 -6.58 16 9 C 0.19 4.72 8.85 85.07 0.75 5.48 16 10 N -0.54 -12.58 10.42 -198.97 -2.07 -14.66 16 11 C 0.31 6.13 12.27 180.84 2.22 8.35 16 12 N -0.52 -11.55 9.45 -187.07 -1.77 -13.32 16 13 C 0.25 6.26 6.53 42.92 0.28 6.54 16 14 C -0.14 -3.18 4.94 -11.54 -0.06 -3.24 16 15 C -0.14 -2.65 10.23 30.59 0.31 -2.33 16 16 C -0.14 -2.25 10.04 30.59 0.31 -1.94 16 17 C 0.12 3.63 5.04 86.36 0.43 4.07 16 18 C -0.14 -4.35 5.78 30.67 0.18 -4.17 16 19 C 0.17 6.04 2.53 45.02 0.11 6.16 16 20 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 21 N -0.72 -32.13 3.64 -322.82 -1.18 -33.31 16 22 C -0.23 -11.43 9.93 84.03 0.83 -10.60 16 23 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 24 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 25 N -0.97 -56.06 13.06 21.65 0.28 -55.78 16 26 Si 0.96 44.45 29.55 68.60 2.03 46.47 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 33 H 0.09 2.80 7.00 -2.39 -0.02 2.78 16 34 H 0.06 2.07 6.64 -2.39 -0.02 2.06 16 35 H 0.18 4.31 7.36 -2.91 -0.02 4.28 16 36 H 0.24 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.11 2.81 7.23 -2.39 -0.02 2.79 16 38 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.11 1.81 7.59 -2.39 -0.02 1.79 16 41 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 2.30 7.74 -2.39 -0.02 2.28 16 43 H 0.08 2.19 5.12 -2.39 -0.01 2.18 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.37 18.16 5.94 -92.71 -0.55 17.61 16 47 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -62.88 375.36 2.63 -60.25 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.44 Total: 35.35 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 7.41 Total: 14.59 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -7.19 Total: -137.31 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.35 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -62.88 2.63 -60.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036277268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.714 kcal (2) G-P(sol) polarization free energy of solvation -62.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds