Wall clock time and date at job start Tue Mar 31 2020 17:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49852 * 2 1 4 4 C 1.53188 * 109.49833 * 120.07124 * 2 1 3 5 5 N 1.46925 * 108.89272 * 174.51180 * 4 2 1 6 6 C 1.34784 * 120.63144 * 126.46151 * 5 4 2 7 7 O 1.21554 * 119.99630 * 354.20669 * 6 5 4 8 8 C 1.47828 * 120.00231 * 174.21163 * 6 5 4 9 9 C 1.39968 * 120.94107 * 306.19648 * 8 6 5 10 10 N 1.32136 * 118.92516 * 180.02562 * 9 8 6 11 11 C 1.31884 * 120.96350 * 359.97438 * 10 9 8 12 12 N 1.31852 * 122.09874 * 359.97438 * 11 10 9 13 13 C 1.32164 * 120.96681 * 359.75251 * 12 11 10 14 14 C 1.50696 * 120.53779 * 180.29008 * 13 12 11 15 15 C 1.53002 * 117.49822 * 13.89995 * 14 13 12 16 16 C 1.53002 * 117.49826 * 305.24446 * 14 13 12 17 17 C 1.46958 * 118.72030 * 306.64127 * 5 4 2 18 18 C 1.53194 * 108.88766 * 53.35162 * 17 5 4 19 19 C 1.53040 * 109.49577 * 239.90666 * 2 1 3 20 20 H 1.09007 * 109.46033 * 58.67541 * 19 2 1 21 21 N 1.46505 * 109.46012 * 298.70666 * 19 2 1 22 22 C 1.36936 * 119.99869 * 155.00293 * 21 19 2 23 23 H 1.07997 * 120.00479 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99499 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00287 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99690 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47085 * 60.00388 * 26 24 22 28 28 H 1.48500 * 109.47073 * 180.02562 * 26 24 22 29 29 H 1.48491 * 109.47443 * 300.00002 * 26 24 22 30 30 H 1.09003 * 109.46879 * 299.93140 * 1 2 3 31 31 H 1.08995 * 109.47490 * 59.92812 * 1 2 3 32 32 H 1.09003 * 109.47152 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.58665 * 294.36942 * 4 2 1 34 34 H 1.09002 * 109.59033 * 54.65494 * 4 2 1 35 35 H 1.07998 * 120.53214 * 359.97438 * 9 8 6 36 36 H 1.07997 * 118.94458 * 179.97438 * 11 10 9 37 37 H 1.08999 * 115.55470 * 159.57464 * 14 13 12 38 38 H 1.08998 * 117.50261 * 0.02562 * 15 14 13 39 39 H 1.09007 * 117.49866 * 145.02189 * 15 14 13 40 40 H 1.09000 * 117.49734 * 214.98400 * 16 14 13 41 41 H 1.08998 * 117.49573 * 359.97438 * 16 14 13 42 42 H 1.09001 * 109.46427 * 293.57515 * 17 5 4 43 43 H 1.08993 * 109.71724 * 173.28282 * 17 5 4 44 44 H 1.08994 * 109.49801 * 185.49404 * 18 17 5 45 45 H 1.09002 * 109.52410 * 65.41376 * 18 17 5 46 46 H 0.96994 * 119.99722 * 334.99400 * 21 19 2 47 47 H 0.96998 * 119.99691 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5045 -0.8319 1.1714 6 6 4.2807 -0.3908 2.1812 7 8 3.7804 0.1967 3.1204 8 6 5.7405 -0.6214 2.1464 9 6 6.2618 -1.9082 1.9686 10 7 7.5731 -2.0688 1.9443 11 6 8.3855 -1.0393 2.0840 12 7 7.9372 0.1892 2.2526 13 6 6.6402 0.4414 2.2840 14 6 6.1385 1.8501 2.4708 15 6 7.1461 2.9880 2.2952 16 6 6.6399 2.6224 3.6927 17 6 4.1053 -1.4268 -0.0306 18 6 3.5708 -0.6954 -1.2660 19 6 2.0408 -0.7234 -1.2482 20 1 1.6583 -0.2248 -2.1389 21 7 1.5782 -2.1134 -1.2304 22 6 1.4480 -2.8067 -2.4040 23 1 1.6860 -2.3289 -3.3428 24 6 1.0103 -4.1239 -2.3870 25 7 0.7208 -4.7065 -1.2428 26 14 0.8320 -5.0696 -3.9881 27 1 2.1485 -5.1379 -4.6718 28 1 0.3515 -6.4448 -3.6998 29 1 -0.1461 -4.3778 -4.8654 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1575 2.1389 34 1 1.6033 -1.7205 1.2997 35 1 5.6028 -2.7561 1.8540 36 1 9.4519 -1.2079 2.0594 37 1 5.1135 2.0310 2.1469 38 1 8.1718 2.7178 2.0441 39 1 6.7839 3.9177 1.8560 40 1 5.9449 3.3115 4.1725 41 1 7.3323 2.1114 4.3617 42 1 3.8375 -2.4819 -0.0863 43 1 5.1898 -1.3268 0.0125 44 1 3.9334 -1.1902 -2.1669 45 1 3.9159 0.3385 -1.2549 46 1 1.3643 -2.5425 -0.3872 47 1 0.4145 -5.6268 -1.2310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036277269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:06 Heat of formation + Delta-G solvation = 54.191773 kcal Electronic energy + Delta-G solvation = -29251.795862 eV Core-core repulsion = 25435.866773 eV Total energy + Delta-G solvation = -3815.929089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56469 -39.80118 -37.82674 -37.35831 -34.45862 -33.56704 -33.06689 -32.05401 -31.46965 -29.24706 -26.80695 -25.67220 -25.49704 -24.30102 -23.50640 -22.53780 -21.76521 -21.42218 -20.23911 -18.49272 -18.09642 -17.41785 -17.25962 -16.90426 -16.08526 -15.57413 -15.00491 -14.89103 -14.48785 -14.41101 -14.32334 -14.04957 -13.82093 -13.71283 -13.35495 -13.00787 -12.58871 -12.29061 -12.27392 -11.82433 -11.76231 -11.69877 -11.55850 -11.44469 -11.23653 -10.93689 -10.85168 -10.70641 -10.58029 -10.55851 -10.40056 -10.26214 -9.90723 -9.79721 -9.60706 -9.50226 -9.44020 -8.97797 -8.36554 -7.03569 -5.83908 -3.12662 0.41388 0.78438 2.61615 3.04225 3.36440 3.39031 3.44508 3.45194 3.68246 3.81590 3.92279 4.09306 4.39677 4.53340 4.62591 4.82070 4.83835 4.90047 5.05773 5.14131 5.23345 5.29271 5.44184 5.46812 5.51607 5.54091 5.64797 5.65349 5.73328 5.84148 5.87752 5.97948 5.98244 5.99685 6.08546 6.15281 6.25194 6.31493 6.43016 6.52382 6.60929 6.68919 6.69305 6.84899 6.92091 7.51233 7.63883 7.80910 8.15079 8.34516 9.46369 10.01867 10.37139 11.38277 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.003557 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.452019 B = 7869.259391 C = 8814.198987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.567 3.433 7 O -0.535 6.535 8 C -0.221 4.221 9 C 0.187 3.813 10 N -0.523 5.523 11 C 0.309 3.691 12 N -0.522 5.522 13 C 0.252 3.748 14 C -0.124 4.124 15 C -0.155 4.155 16 C -0.145 4.145 17 C 0.112 3.888 18 C -0.149 4.149 19 C 0.179 3.821 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.009 4.009 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.176 0.824 36 H 0.200 0.800 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.537 12.331 7.060 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.353 3.647 7 O -0.412 6.412 8 C -0.228 4.228 9 C 0.021 3.979 10 N -0.236 5.236 11 C 0.022 3.978 12 N -0.236 5.236 13 C 0.105 3.895 14 C -0.143 4.143 15 C -0.193 4.193 16 C -0.183 4.183 17 C -0.010 4.010 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.193 0.807 36 H 0.217 0.783 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.226 12.369 7.351 18.881 hybrid contribution -0.976 -0.894 -0.797 1.545 sum 11.249 11.475 6.554 17.355 Atomic orbital electron populations 1.21666 0.94061 1.03265 1.00515 1.21699 0.96620 0.98850 0.95601 0.91570 1.21727 0.77752 1.01891 0.98922 1.48088 1.07315 1.59257 1.17542 1.17783 0.85027 0.79106 0.82825 1.90777 1.74381 1.41531 1.34558 1.21536 0.96414 0.96602 1.08294 1.23557 0.91787 0.95580 0.87006 1.68474 1.04390 1.35390 1.15359 1.25125 1.01007 0.82889 0.88813 1.68163 1.15263 1.24425 1.15777 1.20777 0.87763 0.94172 0.86740 1.20996 0.99863 0.86897 1.06506 1.23027 0.99450 0.97359 0.99428 1.22919 1.02862 1.01757 0.90748 1.21823 0.96100 0.99306 0.83781 1.22519 1.00637 0.98591 0.97234 1.20215 0.90585 0.87448 0.94932 0.92998 1.42458 1.78985 1.07648 1.06951 1.19166 1.37537 0.93884 0.86549 0.91311 1.24693 1.02120 0.97148 0.96597 1.69630 1.51511 1.13155 1.23701 0.86320 0.77775 0.79234 0.83134 1.21342 1.21775 1.21358 0.93711 0.92743 0.90974 0.89530 0.90248 0.80677 0.78339 0.85556 0.87359 0.88242 0.87919 0.88494 0.89269 0.91866 0.90602 0.93342 0.78104 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.05 37.16 0.34 -1.76 16 2 C -0.11 -1.67 2.67 -90.50 -0.24 -1.91 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.88 5.42 -3.71 -0.02 1.86 16 5 N -0.59 -9.04 2.98 -173.86 -0.52 -9.56 16 6 C 0.57 8.79 6.33 -12.33 -0.08 8.71 16 7 O -0.53 -9.48 15.46 5.32 0.08 -9.40 16 8 C -0.22 -3.07 4.62 -104.69 -0.48 -3.55 16 9 C 0.19 2.44 9.12 -16.77 -0.15 2.28 16 10 N -0.52 -6.57 10.42 -14.24 -0.15 -6.72 16 11 C 0.31 3.39 12.27 -92.03 -1.13 2.26 16 12 N -0.52 -6.31 9.54 -10.48 -0.10 -6.41 16 13 C 0.25 3.30 6.50 -81.82 -0.53 2.77 16 14 C -0.12 -1.47 5.29 -91.77 -0.49 -1.96 16 15 C -0.16 -1.46 10.04 -26.69 -0.27 -1.73 16 16 C -0.14 -1.45 10.23 -26.69 -0.27 -1.72 16 17 C 0.11 1.72 5.37 -3.69 -0.02 1.70 16 18 C -0.15 -2.38 5.78 -26.61 -0.15 -2.53 16 19 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 21 N -0.72 -15.81 3.64 -53.38 -0.19 -16.01 16 22 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 26 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 33 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 34 H 0.08 1.38 6.65 -51.93 -0.35 1.04 16 35 H 0.18 2.11 7.82 -52.49 -0.41 1.70 16 36 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 1.63 6.95 -51.93 -0.36 1.27 16 38 H 0.11 1.04 7.66 -51.93 -0.40 0.64 16 39 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 43 H 0.06 0.89 5.41 -51.93 -0.28 0.60 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.38 9.03 5.93 -40.82 -0.24 8.79 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -29.32 376.72 -10.38 -39.70 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.96 Total: 11.10 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -3.92 Total: 0.86 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.24 Total: -64.30 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.32 -10.38 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036277269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.895 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds