Wall clock time and date at job start Tue Mar 31 2020 17:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.49852 * 2 1 4 4 C 1.53188 * 109.49833 * 120.07124 * 2 1 3 5 5 N 1.46925 * 108.89272 * 174.51180 * 4 2 1 6 6 C 1.34784 * 120.63144 * 126.46151 * 5 4 2 7 7 O 1.21554 * 119.99630 * 354.20669 * 6 5 4 8 8 C 1.47828 * 120.00231 * 174.21163 * 6 5 4 9 9 C 1.39968 * 120.94107 * 306.19648 * 8 6 5 10 10 N 1.32136 * 118.92516 * 180.02562 * 9 8 6 11 11 C 1.31884 * 120.96350 * 359.97438 * 10 9 8 12 12 N 1.31852 * 122.09874 * 359.97438 * 11 10 9 13 13 C 1.32164 * 120.96681 * 359.75251 * 12 11 10 14 14 C 1.50696 * 120.53779 * 180.29008 * 13 12 11 15 15 C 1.53002 * 117.49822 * 13.89995 * 14 13 12 16 16 C 1.53002 * 117.49826 * 305.24446 * 14 13 12 17 17 C 1.46958 * 118.72030 * 306.64127 * 5 4 2 18 18 C 1.53194 * 108.88766 * 53.35162 * 17 5 4 19 19 C 1.53040 * 109.49577 * 239.90666 * 2 1 3 20 20 H 1.09007 * 109.46033 * 58.67541 * 19 2 1 21 21 N 1.46505 * 109.46012 * 298.70666 * 19 2 1 22 22 C 1.36936 * 119.99869 * 155.00293 * 21 19 2 23 23 H 1.07997 * 120.00479 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99499 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00287 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99690 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47085 * 60.00388 * 26 24 22 28 28 H 1.48500 * 109.47073 * 180.02562 * 26 24 22 29 29 H 1.48491 * 109.47443 * 300.00002 * 26 24 22 30 30 H 1.09003 * 109.46879 * 299.93140 * 1 2 3 31 31 H 1.08995 * 109.47490 * 59.92812 * 1 2 3 32 32 H 1.09003 * 109.47152 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.58665 * 294.36942 * 4 2 1 34 34 H 1.09002 * 109.59033 * 54.65494 * 4 2 1 35 35 H 1.07998 * 120.53214 * 359.97438 * 9 8 6 36 36 H 1.07997 * 118.94458 * 179.97438 * 11 10 9 37 37 H 1.08999 * 115.55470 * 159.57464 * 14 13 12 38 38 H 1.08998 * 117.50261 * 0.02562 * 15 14 13 39 39 H 1.09007 * 117.49866 * 145.02189 * 15 14 13 40 40 H 1.09000 * 117.49734 * 214.98400 * 16 14 13 41 41 H 1.08998 * 117.49573 * 359.97438 * 16 14 13 42 42 H 1.09001 * 109.46427 * 293.57515 * 17 5 4 43 43 H 1.08993 * 109.71724 * 173.28282 * 17 5 4 44 44 H 1.08994 * 109.49801 * 185.49404 * 18 17 5 45 45 H 1.09002 * 109.52410 * 65.41376 * 18 17 5 46 46 H 0.96994 * 119.99722 * 334.99400 * 21 19 2 47 47 H 0.96998 * 119.99691 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 1.2497 5 7 3.5045 -0.8319 1.1714 6 6 4.2807 -0.3908 2.1812 7 8 3.7804 0.1967 3.1204 8 6 5.7405 -0.6214 2.1464 9 6 6.2618 -1.9082 1.9686 10 7 7.5731 -2.0688 1.9443 11 6 8.3855 -1.0393 2.0840 12 7 7.9372 0.1892 2.2526 13 6 6.6402 0.4414 2.2840 14 6 6.1385 1.8501 2.4708 15 6 7.1461 2.9880 2.2952 16 6 6.6399 2.6224 3.6927 17 6 4.1053 -1.4268 -0.0306 18 6 3.5708 -0.6954 -1.2660 19 6 2.0408 -0.7234 -1.2482 20 1 1.6583 -0.2248 -2.1389 21 7 1.5782 -2.1134 -1.2304 22 6 1.4480 -2.8067 -2.4040 23 1 1.6860 -2.3289 -3.3428 24 6 1.0103 -4.1239 -2.3870 25 7 0.7208 -4.7065 -1.2428 26 14 0.8320 -5.0696 -3.9881 27 1 2.1485 -5.1379 -4.6718 28 1 0.3515 -6.4448 -3.6998 29 1 -0.1461 -4.3778 -4.8654 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1575 2.1389 34 1 1.6033 -1.7205 1.2997 35 1 5.6028 -2.7561 1.8540 36 1 9.4519 -1.2079 2.0594 37 1 5.1135 2.0310 2.1469 38 1 8.1718 2.7178 2.0441 39 1 6.7839 3.9177 1.8560 40 1 5.9449 3.3115 4.1725 41 1 7.3323 2.1114 4.3617 42 1 3.8375 -2.4819 -0.0863 43 1 5.1898 -1.3268 0.0125 44 1 3.9334 -1.1902 -2.1669 45 1 3.9159 0.3385 -1.2549 46 1 1.3643 -2.5425 -0.3872 47 1 0.4145 -5.6268 -1.2310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036277269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:05 Heat of formation + Delta-G solvation = 38.829350 kcal Electronic energy + Delta-G solvation = -29252.462027 eV Core-core repulsion = 25435.866773 eV Total energy + Delta-G solvation = -3816.595253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.57424 -41.03713 -39.13701 -38.24316 -35.94430 -34.76504 -34.35367 -33.25244 -32.90103 -30.94929 -28.00674 -26.95306 -26.53888 -25.65045 -25.11904 -23.28071 -23.11143 -22.32857 -21.45511 -19.87117 -19.29807 -19.03002 -18.40590 -17.93116 -17.33350 -16.61108 -16.45376 -16.01442 -15.97169 -15.77339 -15.54327 -15.15051 -15.06312 -14.89427 -14.72425 -14.35530 -14.21770 -13.62474 -13.17983 -13.06698 -12.98839 -12.84189 -12.77947 -12.67490 -12.61651 -12.42670 -12.35170 -12.16239 -11.99172 -11.92411 -11.58491 -11.49626 -11.38039 -11.17112 -10.98890 -10.83309 -10.47227 -10.41312 -9.69346 -8.91743 -7.87657 -5.13588 -0.56094 -0.19259 1.41917 1.51194 1.51565 1.57363 1.82537 2.45272 2.60693 2.79121 2.94647 3.03322 3.17897 3.26730 3.46102 3.71652 3.80412 3.86587 3.94170 3.95482 4.01596 4.06618 4.07326 4.25373 4.28796 4.36397 4.50945 4.58005 4.62512 4.69992 4.74679 4.83045 4.88571 4.91810 5.00849 5.05550 5.13093 5.17036 5.20076 5.24853 5.26680 5.28785 5.46449 5.58220 5.62504 5.72346 6.26420 6.34104 6.87260 6.91501 7.42370 8.17705 8.41799 9.35065 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.003557 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.452019 B = 7869.259391 C = 8814.198987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.124 3.876 5 N -0.589 5.589 6 C 0.573 3.427 7 O -0.559 6.559 8 C -0.240 4.240 9 C 0.187 3.813 10 N -0.535 5.535 11 C 0.314 3.686 12 N -0.525 5.525 13 C 0.251 3.749 14 C -0.148 4.148 15 C -0.135 4.135 16 C -0.141 4.141 17 C 0.124 3.876 18 C -0.141 4.141 19 C 0.174 3.826 20 H 0.049 0.951 21 N -0.723 5.723 22 C -0.229 4.229 23 H 0.074 0.926 24 C -0.068 4.068 25 N -0.966 5.966 26 Si 0.960 3.040 27 H -0.281 1.281 28 H -0.302 1.302 29 H -0.283 1.283 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.177 0.823 36 H 0.238 0.762 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.375 0.625 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.317 14.265 6.737 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.002 3.998 5 N -0.320 5.320 6 C 0.360 3.640 7 O -0.438 6.438 8 C -0.248 4.248 9 C 0.020 3.980 10 N -0.248 5.248 11 C 0.028 3.972 12 N -0.238 5.238 13 C 0.105 3.895 14 C -0.167 4.167 15 C -0.172 4.172 16 C -0.178 4.178 17 C 0.001 3.999 18 C -0.182 4.182 19 C 0.065 3.935 20 H 0.067 0.933 21 N -0.364 5.364 22 C -0.361 4.361 23 H 0.092 0.908 24 C -0.261 4.261 25 N -0.617 5.617 26 Si 0.791 3.209 27 H -0.207 1.207 28 H -0.229 1.229 29 H -0.209 1.209 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.194 0.806 36 H 0.254 0.746 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.034 14.347 7.004 21.256 hybrid contribution -1.456 -1.399 -0.659 2.124 sum 12.578 12.947 6.345 19.134 Atomic orbital electron populations 1.21598 0.93823 1.01619 1.01874 1.21620 0.96739 0.99324 0.94036 0.89530 1.21606 0.78165 1.00774 0.99295 1.48051 1.07068 1.59221 1.17631 1.17964 0.85684 0.78253 0.82088 1.90754 1.75061 1.42691 1.35305 1.21404 0.95362 0.97352 1.10653 1.23620 0.92305 0.95386 0.86654 1.68553 1.04118 1.36075 1.16091 1.25934 1.02431 0.82162 0.86671 1.68275 1.14529 1.24863 1.16167 1.21021 0.88081 0.94549 0.85863 1.21013 0.99938 0.87116 1.08619 1.23100 0.98715 0.96797 0.98612 1.22997 1.02791 1.01278 0.90776 1.21643 0.96989 0.97635 0.83601 1.22394 0.98882 0.99921 0.97008 1.20417 0.91757 0.85338 0.95998 0.93334 1.42551 1.79064 1.09172 1.05620 1.19507 1.35018 0.93872 0.87705 0.90841 1.25327 1.03491 0.98355 0.98917 1.69778 1.53674 1.12883 1.25369 0.85407 0.77765 0.77471 0.80257 1.20720 1.22895 1.20942 0.91527 0.92223 0.94027 0.89177 0.92402 0.80555 0.74609 0.86877 0.87290 0.86395 0.86801 0.88766 0.91908 0.90201 0.91536 0.91021 0.79154 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.05 71.98 0.65 -3.25 16 2 C -0.10 -2.91 2.67 -10.72 -0.03 -2.94 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.12 3.91 5.42 86.36 0.47 4.38 16 5 N -0.59 -17.85 2.98 -822.24 -2.45 -20.30 16 6 C 0.57 17.54 6.33 86.78 0.55 18.09 16 7 O -0.56 -19.67 15.46 -3.88 -0.06 -19.73 16 8 C -0.24 -6.48 4.62 -19.91 -0.09 -6.57 16 9 C 0.19 4.73 9.12 85.07 0.78 5.51 16 10 N -0.53 -12.61 10.42 -198.98 -2.07 -14.68 16 11 C 0.31 6.13 12.27 180.84 2.22 8.35 16 12 N -0.52 -11.54 9.54 -187.07 -1.79 -13.32 16 13 C 0.25 6.22 6.50 42.92 0.28 6.50 16 14 C -0.15 -3.28 5.29 -11.54 -0.06 -3.34 16 15 C -0.14 -2.19 10.04 30.62 0.31 -1.89 16 16 C -0.14 -2.53 10.23 30.62 0.31 -2.22 16 17 C 0.12 3.75 5.37 86.36 0.46 4.21 16 18 C -0.14 -4.35 5.78 30.67 0.18 -4.17 16 19 C 0.17 6.06 2.53 45.02 0.11 6.17 16 20 H 0.05 1.74 8.08 -2.38 -0.02 1.73 16 21 N -0.72 -32.21 3.64 -322.79 -1.17 -33.38 16 22 C -0.23 -11.64 9.93 84.03 0.83 -10.81 16 23 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 24 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 25 N -0.97 -56.09 13.06 21.65 0.28 -55.80 16 26 Si 0.96 44.43 29.55 68.60 2.03 46.45 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 29 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.49 7.53 -2.39 -0.02 1.47 16 33 H 0.09 2.80 7.00 -2.38 -0.02 2.78 16 34 H 0.06 2.09 6.65 -2.39 -0.02 2.08 16 35 H 0.18 4.28 7.82 -2.91 -0.02 4.25 16 36 H 0.24 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.11 2.81 6.95 -2.39 -0.02 2.79 16 38 H 0.11 1.78 7.66 -2.39 -0.02 1.76 16 39 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 2.26 7.74 -2.39 -0.02 2.25 16 43 H 0.08 2.17 5.41 -2.39 -0.01 2.15 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 46 H 0.37 18.19 5.93 -92.71 -0.55 17.64 16 47 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -63.09 376.72 2.64 -60.45 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.44 Total: 35.51 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 7.44 Total: 14.80 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -7.20 Total: -137.48 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -63.09 2.64 -60.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036277269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.278 kcal (2) G-P(sol) polarization free energy of solvation -63.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds