Wall clock time and date at job start Tue Mar 31 2020 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49598 * 55.00247 * 3 2 1 5 5 C 1.53196 * 109.49885 * 294.93995 * 3 2 1 6 6 N 1.46919 * 108.77266 * 185.41441 * 5 3 2 7 7 C 1.34775 * 120.63175 * 233.62774 * 6 5 3 8 8 O 1.21292 * 119.99473 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.00491 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.46811 * 179.97438 * 9 7 6 11 11 C 1.53780 * 113.61533 * 274.13135 * 10 9 7 12 12 C 1.53954 * 87.02087 * 220.05489 * 11 10 9 13 13 F 1.39903 * 113.53584 * 270.81542 * 12 11 10 14 14 F 1.39894 * 113.74521 * 139.94705 * 12 11 10 15 15 C 1.53780 * 113.60846 * 176.52747 * 10 9 7 16 16 C 1.46929 * 118.74296 * 53.60862 * 6 5 3 17 17 C 1.53193 * 108.77324 * 306.38918 * 16 6 5 18 18 C 1.53037 * 109.49694 * 175.06518 * 3 2 1 19 19 H 1.09003 * 109.46175 * 301.33902 * 18 3 2 20 20 N 1.46508 * 109.46010 * 61.29793 * 18 3 2 21 21 C 1.36931 * 120.00077 * 204.99724 * 20 18 3 22 22 H 1.08007 * 119.99929 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00005 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99951 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47311 * 90.00294 * 25 23 21 27 27 H 1.48503 * 109.46976 * 210.00595 * 25 23 21 28 28 H 1.48499 * 109.47044 * 329.99968 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 33 33 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 34 34 H 1.08998 * 109.58251 * 305.20057 * 5 3 2 35 35 H 1.08996 * 109.58381 * 65.62524 * 5 3 2 36 36 H 1.08998 * 109.46769 * 299.99778 * 9 7 6 37 37 H 1.09000 * 109.46773 * 59.99903 * 9 7 6 38 38 H 1.08995 * 112.85253 * 45.33743 * 10 9 7 39 39 H 1.08998 * 113.61273 * 334.57104 * 11 10 9 40 40 H 1.09000 * 113.61019 * 105.47619 * 11 10 9 41 41 H 1.09000 * 113.61755 * 254.53208 * 15 10 9 42 42 H 1.09006 * 113.61937 * 25.34743 * 15 10 9 43 43 H 1.08998 * 109.58533 * 66.17365 * 16 6 5 44 44 H 1.09000 * 109.58712 * 186.60279 * 16 6 5 45 45 H 1.08994 * 109.49546 * 174.58556 * 17 16 6 46 46 H 1.08996 * 109.49876 * 294.65132 * 17 16 6 47 47 H 0.97003 * 119.99646 * 25.00198 * 20 18 3 48 48 H 0.96994 * 120.00078 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2429 3.4651 -1.3498 7 6 1.4832 4.5574 -1.5644 8 8 0.2868 4.4415 -1.7270 9 6 2.1203 5.9227 -1.6036 10 6 1.0448 6.9800 -1.8611 11 6 0.7415 7.1997 -3.3527 12 6 0.6538 8.7027 -3.0309 13 9 -0.6288 9.1206 -2.6599 14 9 1.2311 9.5223 -4.0066 15 6 1.5798 8.4215 -1.8358 16 6 3.6934 3.5894 -1.1513 17 6 4.0740 2.8880 0.1564 18 6 3.5654 1.4449 0.1241 19 1 3.8558 0.9364 1.0434 20 7 4.1497 0.7478 -1.0244 21 6 5.3876 0.1721 -0.9187 22 1 5.9331 0.2316 0.0116 23 6 5.9409 -0.4888 -2.0067 24 7 5.2759 -0.5617 -3.1402 25 14 7.6293 -1.2748 -1.8622 26 1 7.4840 -2.6782 -1.3994 27 1 8.2985 -1.2574 -3.1877 28 1 8.4477 -0.5133 -0.8846 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.9930 1.5390 -2.1547 35 1 0.5511 2.2169 -1.3556 36 1 2.6070 6.1239 -0.6493 37 1 2.8604 5.9554 -2.4031 38 1 0.1533 6.8344 -1.2511 39 1 1.5721 6.9417 -4.0097 40 1 -0.2049 6.7651 -3.6744 41 1 1.3092 8.9720 -0.9348 42 1 2.6403 8.4981 -2.0759 43 1 4.2177 3.1201 -1.9836 44 1 3.9653 4.6434 -1.0931 45 1 5.1582 2.8892 0.2677 46 1 3.6214 3.4144 0.9967 47 1 3.6596 0.6942 -1.8598 48 1 5.6627 -1.0232 -3.9006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037885328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:19 Heat of formation + Delta-G solvation = -116.435470 kcal Electronic energy + Delta-G solvation = -29590.821301 eV Core-core repulsion = 25316.804073 eV Total energy + Delta-G solvation = -4274.017228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.98663 -47.32420 -40.26997 -38.59329 -37.35529 -34.47088 -33.78527 -31.73357 -30.59622 -29.41549 -28.30230 -26.50484 -25.18444 -23.91380 -23.54200 -23.05154 -20.83287 -20.27183 -19.53518 -18.25984 -17.56934 -17.39835 -16.92509 -16.72484 -16.39126 -15.90128 -15.39481 -14.94055 -14.60887 -14.21503 -14.15575 -14.03237 -13.74622 -13.62635 -13.49892 -13.36593 -13.28721 -13.04894 -12.80160 -12.63915 -12.36683 -12.26069 -11.82134 -11.50055 -11.42476 -11.34602 -11.11454 -11.09879 -10.97724 -10.84465 -10.72079 -10.63445 -10.33277 -10.29257 -10.20119 -9.81876 -9.59261 -9.54329 -8.96567 -8.25132 -7.02022 -5.83286 -3.11834 2.79517 3.18464 3.28072 3.38280 3.44075 3.45622 3.57549 4.03130 4.11477 4.15521 4.53552 4.69930 4.92740 5.06568 5.14479 5.16103 5.19184 5.27366 5.29236 5.31167 5.43494 5.49493 5.52976 5.55358 5.57165 5.59973 5.67504 5.76893 5.80451 5.89275 6.03483 6.06635 6.12606 6.16241 6.32328 6.35597 6.38279 6.53816 6.60108 6.67407 6.73830 6.90847 6.98099 7.64375 7.69581 8.35163 8.36189 9.46943 10.03464 10.38526 11.39010 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.002918 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.736362 B = 9591.992044 C =10726.974811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.601 5.601 7 C 0.511 3.489 8 O -0.553 6.553 9 C -0.129 4.129 10 C -0.086 4.086 11 C -0.157 4.157 12 C 0.251 3.749 13 F -0.181 7.181 14 F -0.194 7.194 15 C -0.162 4.162 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.050 0.950 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 14.810 4.462 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.333 5.333 7 C 0.300 3.700 8 O -0.432 6.432 9 C -0.168 4.168 10 C -0.105 4.105 11 C -0.195 4.195 12 C 0.215 3.785 13 F -0.162 7.162 14 F -0.174 7.174 15 C -0.200 4.200 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.219 0.781 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.850 14.700 4.389 17.233 hybrid contribution 0.934 -0.338 -0.322 1.044 sum -6.917 14.362 4.067 16.452 Atomic orbital electron populations 1.21852 0.96815 1.01037 1.01334 1.21419 0.94275 0.95776 1.03350 1.21742 0.97332 0.96129 0.97056 0.91658 1.21678 0.98761 0.81721 0.98232 1.48153 1.08697 1.06637 1.69791 1.20473 0.86939 0.86097 0.76538 1.90664 1.14945 1.86718 1.50857 1.21630 0.98644 0.91921 1.04654 1.22148 0.99498 0.92274 0.96533 1.24192 1.05751 0.90833 0.98740 1.22186 0.78971 0.88983 0.88407 1.93014 1.39946 1.91695 1.91533 1.93002 1.83716 1.75880 1.64851 1.24188 1.00880 0.97320 0.97623 1.21752 0.79180 0.99994 1.00075 1.22523 1.01806 0.99339 0.95459 1.20220 0.89758 0.90635 0.92602 0.93180 1.42480 1.19048 1.64007 1.10575 1.19208 0.93593 1.27059 0.97056 0.91284 1.24700 0.98550 1.01437 0.96030 1.69643 1.38124 1.47982 1.02253 0.86246 0.84211 0.79381 0.76648 1.21835 1.21892 1.20852 0.93398 0.92794 0.93169 0.92060 0.90508 0.90833 0.89615 0.88221 0.88425 0.86920 0.87113 0.88473 0.88769 0.86836 0.89667 0.91195 0.90745 0.93341 0.78096 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16 2 C -0.11 -1.71 5.19 -26.73 -0.14 -1.85 16 3 C -0.10 -1.60 2.14 -90.50 -0.19 -1.79 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.12 1.90 5.03 -3.71 -0.02 1.88 16 6 N -0.60 -8.86 2.97 -172.77 -0.51 -9.38 16 7 C 0.51 7.17 7.70 -10.98 -0.08 7.09 16 8 O -0.55 -9.39 15.20 5.55 0.08 -9.31 16 9 C -0.13 -1.24 3.87 -27.88 -0.11 -1.35 16 10 C -0.09 -0.80 3.09 -89.81 -0.28 -1.08 16 11 C -0.16 -1.53 7.44 -25.83 -0.19 -1.72 16 12 C 0.25 2.50 3.28 -25.83 -0.08 2.42 16 13 F -0.18 -2.11 17.38 2.25 0.04 -2.07 16 14 F -0.19 -2.17 17.41 2.25 0.04 -2.13 16 15 C -0.16 -1.23 7.43 -25.92 -0.19 -1.42 16 16 C 0.11 1.60 6.08 -3.71 -0.02 1.58 16 17 C -0.15 -2.28 5.78 -26.61 -0.15 -2.43 16 18 C 0.18 3.14 2.53 -67.89 -0.17 2.97 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -15.84 3.72 -53.38 -0.20 -16.04 16 21 C -0.24 -6.01 9.93 -15.06 -0.15 -6.16 16 22 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 25 Si 0.90 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.72 6.70 -51.93 -0.35 0.38 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.40 7.70 -51.93 -0.40 1.00 16 34 H 0.07 1.34 6.64 -51.93 -0.34 0.99 16 35 H 0.09 1.40 5.72 -51.93 -0.30 1.11 16 36 H 0.10 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.10 0.82 7.68 -51.93 -0.40 0.42 16 38 H 0.11 1.21 7.73 -51.93 -0.40 0.81 16 39 H 0.11 0.96 7.92 -51.93 -0.41 0.55 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.11 0.69 8.10 -51.93 -0.42 0.26 16 43 H 0.09 1.48 7.74 -51.93 -0.40 1.07 16 44 H 0.07 0.77 5.93 -51.93 -0.31 0.46 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.38 9.13 5.95 -40.82 -0.24 8.89 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -29.28 380.11 -8.36 -37.64 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.72 Total: 8.92 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.52 Total: -3.92 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.01 Total: -51.14 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.28 -8.36 -37.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037885328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.793 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds