Wall clock time and date at job start Tue Mar 31 2020 15:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49598 * 55.00247 * 3 2 1 5 5 C 1.53196 * 109.49885 * 294.93995 * 3 2 1 6 6 N 1.46919 * 108.77266 * 185.41441 * 5 3 2 7 7 C 1.34775 * 120.63175 * 233.62774 * 6 5 3 8 8 O 1.21292 * 119.99473 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.00491 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.46811 * 179.97438 * 9 7 6 11 11 C 1.53780 * 113.61533 * 274.13135 * 10 9 7 12 12 C 1.53954 * 87.02087 * 220.05489 * 11 10 9 13 13 F 1.39903 * 113.53584 * 270.81542 * 12 11 10 14 14 F 1.39894 * 113.74521 * 139.94705 * 12 11 10 15 15 C 1.53780 * 113.60846 * 176.52747 * 10 9 7 16 16 C 1.46929 * 118.74296 * 53.60862 * 6 5 3 17 17 C 1.53193 * 108.77324 * 306.38918 * 16 6 5 18 18 C 1.53037 * 109.49694 * 175.06518 * 3 2 1 19 19 H 1.09003 * 109.46175 * 301.33902 * 18 3 2 20 20 N 1.46508 * 109.46010 * 61.29793 * 18 3 2 21 21 C 1.36931 * 120.00077 * 204.99724 * 20 18 3 22 22 H 1.08007 * 119.99929 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00005 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99951 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47311 * 90.00294 * 25 23 21 27 27 H 1.48503 * 109.46976 * 210.00595 * 25 23 21 28 28 H 1.48499 * 109.47044 * 329.99968 * 25 23 21 29 29 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 33 33 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 34 34 H 1.08998 * 109.58251 * 305.20057 * 5 3 2 35 35 H 1.08996 * 109.58381 * 65.62524 * 5 3 2 36 36 H 1.08998 * 109.46769 * 299.99778 * 9 7 6 37 37 H 1.09000 * 109.46773 * 59.99903 * 9 7 6 38 38 H 1.08995 * 112.85253 * 45.33743 * 10 9 7 39 39 H 1.08998 * 113.61273 * 334.57104 * 11 10 9 40 40 H 1.09000 * 113.61019 * 105.47619 * 11 10 9 41 41 H 1.09000 * 113.61755 * 254.53208 * 15 10 9 42 42 H 1.09006 * 113.61937 * 25.34743 * 15 10 9 43 43 H 1.08998 * 109.58533 * 66.17365 * 16 6 5 44 44 H 1.09000 * 109.58712 * 186.60279 * 16 6 5 45 45 H 1.08994 * 109.49546 * 174.58556 * 17 16 6 46 46 H 1.08996 * 109.49876 * 294.65132 * 17 16 6 47 47 H 0.97003 * 119.99646 * 25.00198 * 20 18 3 48 48 H 0.96994 * 120.00078 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9819 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2429 3.4651 -1.3498 7 6 1.4832 4.5574 -1.5644 8 8 0.2868 4.4415 -1.7270 9 6 2.1203 5.9227 -1.6036 10 6 1.0448 6.9800 -1.8611 11 6 0.7415 7.1997 -3.3527 12 6 0.6538 8.7027 -3.0309 13 9 -0.6288 9.1206 -2.6599 14 9 1.2311 9.5223 -4.0066 15 6 1.5798 8.4215 -1.8358 16 6 3.6934 3.5894 -1.1513 17 6 4.0740 2.8880 0.1564 18 6 3.5654 1.4449 0.1241 19 1 3.8558 0.9364 1.0434 20 7 4.1497 0.7478 -1.0244 21 6 5.3876 0.1721 -0.9187 22 1 5.9331 0.2316 0.0116 23 6 5.9409 -0.4888 -2.0067 24 7 5.2759 -0.5617 -3.1402 25 14 7.6293 -1.2748 -1.8622 26 1 7.4840 -2.6782 -1.3994 27 1 8.2985 -1.2574 -3.1877 28 1 8.4477 -0.5133 -0.8846 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.9930 1.5390 -2.1547 35 1 0.5511 2.2169 -1.3556 36 1 2.6070 6.1239 -0.6493 37 1 2.8604 5.9554 -2.4031 38 1 0.1533 6.8344 -1.2511 39 1 1.5721 6.9417 -4.0097 40 1 -0.2049 6.7651 -3.6744 41 1 1.3092 8.9720 -0.9348 42 1 2.6403 8.4981 -2.0759 43 1 4.2177 3.1201 -1.9836 44 1 3.9653 4.6434 -1.0931 45 1 5.1582 2.8892 0.2677 46 1 3.6214 3.4144 0.9967 47 1 3.6596 0.6942 -1.8598 48 1 5.6627 -1.0232 -3.9006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037885328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:18 Heat of formation + Delta-G solvation = -131.633388 kcal Electronic energy + Delta-G solvation = -29591.480332 eV Core-core repulsion = 25316.804073 eV Total energy + Delta-G solvation = -4274.676259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.79916 -48.15161 -41.41647 -39.63996 -38.40165 -35.82760 -35.33845 -33.36328 -31.52625 -30.94074 -29.59637 -27.17055 -26.48676 -25.44110 -24.99979 -23.98411 -22.11445 -21.11836 -20.60223 -19.58570 -19.20780 -18.37583 -18.04735 -17.50869 -17.22862 -16.98803 -16.61975 -16.34743 -15.97870 -15.63282 -15.42132 -15.02471 -14.84341 -14.75408 -14.68222 -14.45687 -14.29996 -14.19588 -14.05404 -13.62311 -13.45884 -13.30890 -13.03492 -12.89040 -12.82551 -12.61744 -12.34264 -12.29842 -12.14428 -12.08981 -11.94560 -11.81496 -11.79056 -11.55338 -11.42944 -11.34916 -11.08441 -10.85801 -10.63989 -9.51609 -8.88867 -7.86541 -5.12246 1.50667 1.51903 1.59114 1.71465 2.09008 2.54851 2.61627 2.86739 3.26922 3.39413 3.40894 3.47673 3.71644 3.88491 3.91127 4.08636 4.12729 4.17797 4.31979 4.41492 4.43041 4.46813 4.49820 4.53292 4.57509 4.64005 4.70386 4.73012 4.77814 4.85469 4.89705 4.89995 4.93966 5.04700 5.08672 5.19579 5.25531 5.30118 5.33312 5.37618 5.42737 5.53858 5.63669 5.72346 6.35353 6.57153 7.24912 7.43027 8.20154 8.43171 9.36684 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014900 B = 0.002918 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.736362 B = 9591.992044 C =10726.974811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.125 3.875 6 N -0.604 5.604 7 C 0.507 3.493 8 O -0.587 6.587 9 C -0.121 4.121 10 C -0.084 4.084 11 C -0.162 4.162 12 C 0.238 3.762 13 F -0.195 7.195 14 F -0.202 7.202 15 C -0.140 4.140 16 C 0.118 3.882 17 C -0.143 4.143 18 C 0.170 3.830 19 H 0.044 0.956 20 N -0.725 5.725 21 C -0.223 4.223 22 H 0.075 0.925 23 C -0.073 4.073 24 N -0.969 5.969 25 Si 0.961 3.039 26 H -0.296 1.296 27 H -0.302 1.302 28 H -0.269 1.269 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.049 0.951 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.373 0.627 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 16.861 6.485 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.103 0.897 5 C 0.002 3.998 6 N -0.335 5.335 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.161 4.161 10 C -0.103 4.103 11 C -0.200 4.200 12 C 0.202 3.798 13 F -0.176 7.176 14 F -0.183 7.183 15 C -0.178 4.178 16 C -0.004 4.004 17 C -0.183 4.183 18 C 0.062 3.938 19 H 0.062 0.938 20 N -0.366 5.366 21 C -0.356 4.356 22 H 0.093 0.907 23 C -0.265 4.265 24 N -0.620 5.620 25 Si 0.792 3.208 26 H -0.224 1.224 27 H -0.230 1.230 28 H -0.193 1.193 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.068 0.932 44 H 0.132 0.868 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.206 0.794 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.030 16.786 6.468 19.314 hybrid contribution 0.577 -0.970 -0.917 1.454 sum -6.453 15.816 5.551 17.961 Atomic orbital electron populations 1.21779 0.94851 1.01827 1.01825 1.21349 0.95994 0.95547 1.01586 1.21640 0.95888 0.96189 0.97344 0.89731 1.21435 0.98458 0.82616 0.97322 1.48213 1.08995 1.06266 1.70047 1.21301 0.86550 0.87286 0.75105 1.90657 1.16672 1.87334 1.52110 1.21708 0.98740 0.88562 1.07044 1.22047 0.99111 0.93543 0.95622 1.24274 1.05380 0.90786 0.99599 1.22542 0.79031 0.88690 0.89574 1.92984 1.41153 1.91825 1.91657 1.92983 1.83751 1.76122 1.65444 1.24155 1.01486 0.95337 0.96798 1.21721 0.78381 1.02196 0.98119 1.22390 1.01432 0.97414 0.97101 1.20469 0.90962 0.91881 0.90502 0.93810 1.42598 1.18197 1.64355 1.11445 1.19557 0.94285 1.25060 0.96657 0.90696 1.25358 1.01727 1.03291 0.96155 1.69799 1.39559 1.49837 1.02845 0.85308 0.80990 0.78307 0.76163 1.22356 1.22952 1.19340 0.91785 0.93304 0.92323 0.92070 0.93923 0.93902 0.89991 0.85133 0.86406 0.88585 0.85928 0.90309 0.87307 0.84357 0.93207 0.86754 0.91451 0.90332 0.79373 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.67 71.98 0.70 -3.06 16 2 C -0.11 -3.32 5.19 30.60 0.16 -3.16 16 3 C -0.09 -2.75 2.14 -10.72 -0.02 -2.77 16 4 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 5 C 0.12 4.02 5.03 86.37 0.43 4.46 16 6 N -0.60 -16.86 2.97 -818.90 -2.43 -19.29 16 7 C 0.51 13.18 7.70 87.66 0.67 13.86 16 8 O -0.59 -19.49 15.20 -3.07 -0.05 -19.53 16 9 C -0.12 -1.87 3.87 29.85 0.12 -1.75 16 10 C -0.08 -1.36 3.09 -10.27 -0.03 -1.39 16 11 C -0.16 -2.94 7.44 31.18 0.23 -2.71 16 12 C 0.24 4.35 3.28 31.18 0.10 4.45 16 13 F -0.20 -4.41 17.38 44.97 0.78 -3.63 16 14 F -0.20 -4.21 17.41 44.97 0.78 -3.43 16 15 C -0.14 -1.62 7.43 31.12 0.23 -1.39 16 16 C 0.12 3.08 6.08 86.36 0.53 3.61 16 17 C -0.14 -3.95 5.78 30.67 0.18 -3.78 16 18 C 0.17 5.84 2.53 45.02 0.11 5.96 16 19 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 20 N -0.72 -32.35 3.72 -322.80 -1.20 -33.55 16 21 C -0.22 -11.31 9.93 84.03 0.83 -10.47 16 22 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -56.72 13.06 21.65 0.28 -56.44 16 25 Si 0.96 44.27 29.55 68.60 2.03 46.30 16 26 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.30 6.70 -2.39 -0.02 1.29 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.61 7.70 -2.39 -0.02 1.60 16 34 H 0.04 1.64 6.64 -2.39 -0.02 1.63 16 35 H 0.08 2.70 5.72 -2.39 -0.01 2.69 16 36 H 0.13 1.29 7.69 -2.39 -0.02 1.27 16 37 H 0.12 1.43 7.68 -2.39 -0.02 1.41 16 38 H 0.10 1.91 7.73 -2.39 -0.02 1.89 16 39 H 0.12 1.89 7.92 -2.39 -0.02 1.87 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.14 0.96 8.10 -2.38 -0.02 0.94 16 43 H 0.05 1.69 7.74 -2.39 -0.02 1.67 16 44 H 0.11 1.97 5.93 -2.39 -0.01 1.96 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 47 H 0.37 18.43 5.95 -92.71 -0.55 17.87 16 48 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -65.92 380.11 5.31 -60.60 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.41 Total: 30.61 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 4.71 Total: -1.64 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.35 Total: -109.28 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 1.56 Total: -7.06 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.92 5.31 -60.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037885328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.030 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds