Wall clock time and date at job start Tue Mar 31 2020 15:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 H 1.09002 * 109.49849 * 305.00197 * 3 2 1 5 5 C 1.53188 * 109.49646 * 65.06559 * 3 2 1 6 6 N 1.46929 * 108.77645 * 174.61842 * 5 3 2 7 7 C 1.34771 * 120.63182 * 126.41350 * 6 5 3 8 8 O 1.21277 * 120.00314 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47154 * 179.97438 * 9 7 6 11 11 C 1.53782 * 113.61479 * 274.13448 * 10 9 7 12 12 C 1.53954 * 87.01974 * 220.05006 * 11 10 9 13 13 F 1.39900 * 113.53553 * 270.81448 * 12 11 10 14 14 F 1.39897 * 113.73969 * 139.94656 * 12 11 10 15 15 C 1.53781 * 87.10993 * 25.36624 * 12 11 10 16 16 C 1.46930 * 118.73732 * 306.39400 * 6 5 3 17 17 C 1.53186 * 108.77576 * 53.60420 * 16 6 5 18 18 C 1.53041 * 109.52119 * 184.91910 * 3 2 1 19 19 H 1.09001 * 109.46229 * 58.65287 * 18 3 2 20 20 N 1.46493 * 109.46157 * 298.68466 * 18 3 2 21 21 C 1.36939 * 119.99933 * 155.00070 * 20 18 3 22 22 H 1.08000 * 120.00229 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00082 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99957 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00000 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47127 * 119.99601 * 25 23 21 28 28 H 1.48503 * 109.46959 * 239.99740 * 25 23 21 29 29 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47195 * 300.00085 * 1 2 3 31 31 H 1.09000 * 109.47368 * 59.99778 * 1 2 3 32 32 H 1.08999 * 109.47195 * 239.99915 * 2 1 3 33 33 H 1.09000 * 109.47368 * 120.00222 * 2 1 3 34 34 H 1.08996 * 109.59171 * 294.40467 * 5 3 2 35 35 H 1.09002 * 109.58959 * 54.83166 * 5 3 2 36 36 H 1.08995 * 109.47111 * 300.00307 * 9 7 6 37 37 H 1.09002 * 109.47121 * 59.99900 * 9 7 6 38 38 H 1.08994 * 112.84657 * 45.33307 * 10 9 7 39 39 H 1.08995 * 113.61265 * 334.57429 * 11 10 9 40 40 H 1.08999 * 113.61072 * 105.46895 * 11 10 9 41 41 H 1.09010 * 113.61078 * 220.08973 * 15 12 11 42 42 H 1.08995 * 113.61476 * 89.19286 * 15 12 11 43 43 H 1.08992 * 109.58769 * 173.39532 * 16 6 5 44 44 H 1.09008 * 109.58247 * 293.67624 * 16 6 5 45 45 H 1.09000 * 109.49625 * 65.32030 * 17 16 6 46 46 H 1.09008 * 109.49622 * 185.41304 * 17 16 6 47 47 H 0.96993 * 120.00462 * 335.00610 * 20 18 3 48 48 H 0.97005 * 120.00042 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6364 2.1275 1.3094 6 7 2.2423 3.4654 1.3496 7 6 1.4822 4.5572 1.5652 8 8 0.2862 4.4408 1.7289 9 6 2.1184 5.9229 1.6030 10 6 1.0426 6.9798 1.8608 11 6 0.3369 7.4648 0.5835 12 6 0.3835 8.8787 1.1910 13 9 -0.7307 9.1848 1.9797 14 9 0.6837 9.8810 0.2624 15 6 1.6012 8.4056 2.0022 16 6 3.6927 3.5904 1.1505 17 6 4.0731 2.8890 -0.1571 18 6 3.5654 1.4456 -0.1237 19 1 3.8562 0.9370 -1.0428 20 7 4.1496 0.7493 1.0251 21 6 5.3879 0.1741 0.9198 22 1 5.9339 0.2341 -0.0101 23 6 5.9413 -0.4862 2.0082 24 7 5.2761 -0.5590 3.1416 25 14 7.6308 -1.2703 1.8647 26 1 8.1646 -1.0488 0.4969 27 1 8.5471 -0.6572 2.8595 28 1 7.5232 -2.7286 2.1236 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5511 2.2164 1.3560 35 1 1.9935 1.5392 2.1548 36 1 2.8599 5.9563 2.4012 37 1 2.6035 6.1242 0.6479 38 1 0.3559 6.6987 2.6592 39 1 0.9411 7.3564 -0.3171 40 1 -0.6731 7.0718 0.4667 41 1 1.6105 8.7711 3.0291 42 1 2.5517 8.5550 1.4901 43 1 3.9640 4.6444 1.0922 44 1 4.2174 3.1236 1.9842 45 1 3.6196 3.4149 -0.9973 46 1 5.1575 2.8908 -0.2687 47 1 3.6594 0.6956 1.8604 48 1 5.6627 -1.0207 3.9021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037885330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:22 Heat of formation + Delta-G solvation = -116.508396 kcal Electronic energy + Delta-G solvation = -29617.288650 eV Core-core repulsion = 25343.268261 eV Total energy + Delta-G solvation = -4274.020390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.00091 -47.33941 -40.27390 -38.59830 -37.36270 -34.47280 -33.78803 -31.73576 -30.59808 -29.41908 -28.30418 -26.51834 -25.18639 -23.91667 -23.54609 -23.05828 -20.83592 -20.29271 -19.51843 -18.27472 -17.57912 -17.40538 -16.93679 -16.73926 -16.38704 -15.87241 -15.48082 -14.78164 -14.62236 -14.33468 -14.20296 -14.03128 -13.76247 -13.62965 -13.57844 -13.29222 -13.17826 -13.10827 -12.81830 -12.59533 -12.43249 -12.27747 -11.83082 -11.49677 -11.42264 -11.34332 -11.13647 -11.07458 -10.99867 -10.84914 -10.73317 -10.64696 -10.33631 -10.28792 -10.17287 -9.82159 -9.59704 -9.54587 -8.97150 -8.25306 -7.02170 -5.83663 -3.12184 2.79523 3.18197 3.27073 3.37706 3.44172 3.46127 3.56093 4.02262 4.10280 4.14349 4.53301 4.70357 4.92383 5.04459 5.12978 5.15700 5.20891 5.24491 5.29126 5.31391 5.44229 5.49315 5.52271 5.54854 5.55168 5.59310 5.67351 5.76555 5.80299 5.89048 6.03209 6.06218 6.12401 6.16132 6.32237 6.35396 6.38058 6.53641 6.59822 6.67216 6.73668 6.90606 6.97906 7.64754 7.69511 8.34815 8.36145 9.46683 10.03251 10.38214 11.38697 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.002845 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.863206 B = 9840.230926 C =10779.398837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.601 5.601 7 C 0.512 3.488 8 O -0.553 6.553 9 C -0.129 4.129 10 C -0.086 4.086 11 C -0.157 4.157 12 C 0.251 3.749 13 F -0.181 7.181 14 F -0.194 7.194 15 C -0.162 4.162 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.050 0.950 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 14.854 -5.108 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.333 5.333 7 C 0.300 3.700 8 O -0.432 6.432 9 C -0.169 4.169 10 C -0.105 4.105 11 C -0.195 4.195 12 C 0.214 3.786 13 F -0.162 7.162 14 F -0.175 7.175 15 C -0.200 4.200 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.219 0.781 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.969 14.743 -5.070 17.509 hybrid contribution 0.918 -0.315 0.213 0.993 sum -7.052 14.428 -4.856 16.777 Atomic orbital electron populations 1.21850 0.96812 1.01039 1.01332 1.21417 0.94277 0.95774 1.03352 1.21741 0.97329 0.96132 0.97049 0.91666 1.21680 0.98769 0.81714 0.98234 1.48155 1.08701 1.06640 1.69790 1.20466 0.86933 0.86086 0.76554 1.90660 1.14957 1.86716 1.50840 1.21629 0.98759 0.91961 1.04503 1.22154 0.97383 0.92297 0.98630 1.24182 1.04722 0.90939 0.99615 1.22189 0.85727 0.85560 0.85079 1.93016 1.54476 1.94230 1.74431 1.93000 1.92977 1.64831 1.66683 1.24192 0.97506 0.96059 1.02266 1.21748 0.79190 0.99995 1.00058 1.22524 1.01803 0.99346 0.95444 1.20217 0.89761 0.90638 0.92599 0.93182 1.42484 1.19016 1.64045 1.10572 1.19254 0.93516 1.26980 0.97082 0.91224 1.24704 0.98546 1.01470 0.96037 1.69657 1.38028 1.48043 1.02267 0.86178 0.84271 0.78946 0.77124 1.20641 1.21979 1.21982 0.93166 0.92786 0.93411 0.92060 0.90504 0.89618 0.90823 0.88121 0.88520 0.86859 0.87223 0.88509 0.88698 0.86855 0.91221 0.89671 0.93343 0.90741 0.78093 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.71 5.19 -26.73 -0.14 -1.85 16 3 C -0.10 -1.59 2.14 -90.50 -0.19 -1.79 16 4 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.90 5.03 -3.71 -0.02 1.88 16 6 N -0.60 -8.86 2.97 -172.77 -0.51 -9.38 16 7 C 0.51 7.17 7.70 -10.99 -0.08 7.09 16 8 O -0.55 -9.39 15.20 5.56 0.08 -9.30 16 9 C -0.13 -1.24 3.87 -27.88 -0.11 -1.35 16 10 C -0.09 -0.80 3.09 -89.81 -0.28 -1.08 16 11 C -0.16 -1.46 7.44 -25.83 -0.19 -1.65 16 12 C 0.25 2.45 3.28 -25.83 -0.08 2.37 16 13 F -0.18 -2.09 17.38 2.25 0.04 -2.05 16 14 F -0.19 -2.11 17.41 2.25 0.04 -2.07 16 15 C -0.16 -1.23 7.43 -25.92 -0.19 -1.42 16 16 C 0.11 1.60 6.08 -3.71 -0.02 1.58 16 17 C -0.15 -2.27 5.78 -26.61 -0.15 -2.43 16 18 C 0.18 3.14 2.53 -67.89 -0.17 2.97 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -15.84 3.73 -53.39 -0.20 -16.04 16 21 C -0.24 -5.99 9.93 -15.06 -0.15 -6.14 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -26.45 13.06 55.49 0.72 -25.72 16 25 Si 0.90 21.30 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.72 6.70 -51.93 -0.35 0.38 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.39 7.70 -51.93 -0.40 0.99 16 34 H 0.09 1.40 5.72 -51.93 -0.30 1.10 16 35 H 0.07 1.34 6.64 -51.93 -0.34 0.99 16 36 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 37 H 0.10 0.76 7.43 -51.93 -0.39 0.38 16 38 H 0.11 1.24 7.73 -51.93 -0.40 0.84 16 39 H 0.11 0.87 7.92 -51.93 -0.41 0.46 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.11 0.68 8.10 -51.93 -0.42 0.25 16 43 H 0.07 0.76 5.93 -51.93 -0.31 0.46 16 44 H 0.09 1.48 7.75 -51.92 -0.40 1.07 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 47 H 0.38 9.13 5.94 -40.82 -0.24 8.89 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -29.30 380.12 -8.37 -37.66 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.72 Total: 8.79 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.52 Total: -3.89 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.01 Total: -51.14 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.30 -8.37 -37.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037885330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.845 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds