Wall clock time and date at job start Tue Mar 31 2020 15:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 H 1.09002 * 109.49849 * 305.00197 * 3 2 1 5 5 C 1.53188 * 109.49646 * 65.06559 * 3 2 1 6 6 N 1.46929 * 108.77645 * 174.61842 * 5 3 2 7 7 C 1.34771 * 120.63182 * 126.41350 * 6 5 3 8 8 O 1.21277 * 120.00314 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00049 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47154 * 179.97438 * 9 7 6 11 11 C 1.53782 * 113.61479 * 274.13448 * 10 9 7 12 12 C 1.53954 * 87.01974 * 220.05006 * 11 10 9 13 13 F 1.39900 * 113.53553 * 270.81448 * 12 11 10 14 14 F 1.39897 * 113.73969 * 139.94656 * 12 11 10 15 15 C 1.53781 * 87.10993 * 25.36624 * 12 11 10 16 16 C 1.46930 * 118.73732 * 306.39400 * 6 5 3 17 17 C 1.53186 * 108.77576 * 53.60420 * 16 6 5 18 18 C 1.53041 * 109.52119 * 184.91910 * 3 2 1 19 19 H 1.09001 * 109.46229 * 58.65287 * 18 3 2 20 20 N 1.46493 * 109.46157 * 298.68466 * 18 3 2 21 21 C 1.36939 * 119.99933 * 155.00070 * 20 18 3 22 22 H 1.08000 * 120.00229 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00082 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99957 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00000 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47127 * 119.99601 * 25 23 21 28 28 H 1.48503 * 109.46959 * 239.99740 * 25 23 21 29 29 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47195 * 300.00085 * 1 2 3 31 31 H 1.09000 * 109.47368 * 59.99778 * 1 2 3 32 32 H 1.08999 * 109.47195 * 239.99915 * 2 1 3 33 33 H 1.09000 * 109.47368 * 120.00222 * 2 1 3 34 34 H 1.08996 * 109.59171 * 294.40467 * 5 3 2 35 35 H 1.09002 * 109.58959 * 54.83166 * 5 3 2 36 36 H 1.08995 * 109.47111 * 300.00307 * 9 7 6 37 37 H 1.09002 * 109.47121 * 59.99900 * 9 7 6 38 38 H 1.08994 * 112.84657 * 45.33307 * 10 9 7 39 39 H 1.08995 * 113.61265 * 334.57429 * 11 10 9 40 40 H 1.08999 * 113.61072 * 105.46895 * 11 10 9 41 41 H 1.09010 * 113.61078 * 220.08973 * 15 12 11 42 42 H 1.08995 * 113.61476 * 89.19286 * 15 12 11 43 43 H 1.08992 * 109.58769 * 173.39532 * 16 6 5 44 44 H 1.09008 * 109.58247 * 293.67624 * 16 6 5 45 45 H 1.09000 * 109.49625 * 65.32030 * 17 16 6 46 46 H 1.09008 * 109.49622 * 185.41304 * 17 16 6 47 47 H 0.96993 * 120.00462 * 335.00610 * 20 18 3 48 48 H 0.97005 * 120.00042 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6364 2.1275 1.3094 6 7 2.2423 3.4654 1.3496 7 6 1.4822 4.5572 1.5652 8 8 0.2862 4.4408 1.7289 9 6 2.1184 5.9229 1.6030 10 6 1.0426 6.9798 1.8608 11 6 0.3369 7.4648 0.5835 12 6 0.3835 8.8787 1.1910 13 9 -0.7307 9.1848 1.9797 14 9 0.6837 9.8810 0.2624 15 6 1.6012 8.4056 2.0022 16 6 3.6927 3.5904 1.1505 17 6 4.0731 2.8890 -0.1571 18 6 3.5654 1.4456 -0.1237 19 1 3.8562 0.9370 -1.0428 20 7 4.1496 0.7493 1.0251 21 6 5.3879 0.1741 0.9198 22 1 5.9339 0.2341 -0.0101 23 6 5.9413 -0.4862 2.0082 24 7 5.2761 -0.5590 3.1416 25 14 7.6308 -1.2703 1.8647 26 1 8.1646 -1.0488 0.4969 27 1 8.5471 -0.6572 2.8595 28 1 7.5232 -2.7286 2.1236 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5511 2.2164 1.3560 35 1 1.9935 1.5392 2.1548 36 1 2.8599 5.9563 2.4012 37 1 2.6035 6.1242 0.6479 38 1 0.3559 6.6987 2.6592 39 1 0.9411 7.3564 -0.3171 40 1 -0.6731 7.0718 0.4667 41 1 1.6105 8.7711 3.0291 42 1 2.5517 8.5550 1.4901 43 1 3.9640 4.6444 1.0922 44 1 4.2174 3.1236 1.9842 45 1 3.6196 3.4149 -0.9973 46 1 5.1575 2.8908 -0.2687 47 1 3.6594 0.6956 1.8604 48 1 5.6627 -1.0207 3.9021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037885330.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:21 Heat of formation + Delta-G solvation = -131.735122 kcal Electronic energy + Delta-G solvation = -29617.948931 eV Core-core repulsion = 25343.268261 eV Total energy + Delta-G solvation = -4274.680670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.79055 -48.14249 -41.41846 -39.63859 -38.40159 -35.82937 -35.33975 -33.36423 -31.52370 -30.94314 -29.59597 -27.15974 -26.48671 -25.44447 -25.00028 -23.97985 -22.11532 -21.13479 -20.56646 -19.60045 -19.21436 -18.36804 -18.05227 -17.49906 -17.21662 -16.94169 -16.71134 -16.30826 -15.92512 -15.53772 -15.52384 -15.04073 -14.98737 -14.75311 -14.57684 -14.45602 -14.33179 -14.12709 -14.03294 -13.58378 -13.47385 -13.34338 -13.06444 -12.87979 -12.84078 -12.61881 -12.33886 -12.29861 -12.14818 -12.03933 -11.91368 -11.82102 -11.80955 -11.55420 -11.43221 -11.33916 -11.08711 -10.86543 -10.64239 -9.51715 -8.89000 -7.86889 -5.12566 1.49771 1.51853 1.59825 1.71495 2.08992 2.55782 2.61378 2.87629 3.27275 3.39951 3.41294 3.47568 3.72286 3.87623 3.92672 4.08960 4.12700 4.18433 4.29376 4.41612 4.43269 4.46932 4.50224 4.53442 4.58156 4.64889 4.70337 4.73048 4.78155 4.86311 4.89720 4.91515 4.93736 5.04386 5.08574 5.19606 5.25533 5.30039 5.33719 5.37389 5.42702 5.53907 5.63808 5.72317 6.35275 6.57129 7.24932 7.42857 8.20005 8.42853 9.36583 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.002845 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.863206 B = 9840.230926 C =10779.398837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.085 0.915 5 C 0.125 3.875 6 N -0.604 5.604 7 C 0.507 3.493 8 O -0.587 6.587 9 C -0.121 4.121 10 C -0.087 4.087 11 C -0.156 4.156 12 C 0.237 3.763 13 F -0.197 7.197 14 F -0.201 7.201 15 C -0.143 4.143 16 C 0.118 3.882 17 C -0.143 4.143 18 C 0.170 3.830 19 H 0.044 0.956 20 N -0.725 5.725 21 C -0.222 4.222 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.961 3.039 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.303 1.303 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.373 0.627 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 16.843 -6.977 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.110 4.110 4 H 0.103 0.897 5 C 0.002 3.998 6 N -0.335 5.335 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.160 4.160 10 C -0.106 4.106 11 C -0.194 4.194 12 C 0.201 3.799 13 F -0.178 7.178 14 F -0.182 7.182 15 C -0.181 4.181 16 C -0.004 4.004 17 C -0.183 4.183 18 C 0.062 3.938 19 H 0.062 0.938 20 N -0.366 5.366 21 C -0.354 4.354 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.792 3.208 26 H -0.191 1.191 27 H -0.226 1.226 28 H -0.231 1.231 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.158 0.842 43 H 0.132 0.868 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.206 0.794 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.121 16.766 -6.993 19.512 hybrid contribution 0.551 -0.918 0.726 1.294 sum -6.570 15.848 -6.267 18.265 Atomic orbital electron populations 1.21777 0.94854 1.01827 1.01819 1.21348 0.95991 0.95550 1.01592 1.21638 0.95882 0.96189 0.97333 0.89712 1.21438 0.98465 0.82608 0.97331 1.48215 1.08999 1.06266 1.70046 1.21291 0.86543 0.87277 0.75124 1.90652 1.16689 1.87333 1.52084 1.21704 0.98841 0.88600 1.06879 1.22039 0.97243 0.93337 0.97992 1.24245 1.04290 0.90399 1.00430 1.22538 0.86343 0.85460 0.85521 1.92983 1.55571 1.94354 1.74865 1.92985 1.92989 1.65174 1.67019 1.24176 0.97381 0.93763 1.02759 1.21716 0.78387 1.02203 0.98113 1.22392 1.01445 0.97404 0.97076 1.20468 0.90968 0.91897 0.90492 0.93806 1.42604 1.18161 1.64392 1.11448 1.19593 0.94193 1.24951 0.96657 0.90670 1.25361 1.01712 1.03343 0.96172 1.69809 1.39494 1.49904 1.02882 0.85240 0.80860 0.77257 0.77417 1.19074 1.22574 1.23089 0.92323 0.93302 0.91798 0.92059 0.93922 0.89992 0.93914 0.86172 0.85392 0.89147 0.85247 0.90154 0.87843 0.84160 0.86780 0.93240 0.90294 0.91431 0.79373 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.67 71.98 0.70 -3.05 16 2 C -0.11 -3.31 5.19 30.59 0.16 -3.16 16 3 C -0.09 -2.74 2.14 -10.72 -0.02 -2.76 16 4 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 5 C 0.12 4.02 5.03 86.36 0.43 4.45 16 6 N -0.60 -16.86 2.97 -818.91 -2.43 -19.29 16 7 C 0.51 13.19 7.70 87.66 0.67 13.87 16 8 O -0.59 -19.50 15.20 -3.02 -0.05 -19.54 16 9 C -0.12 -1.87 3.87 29.85 0.12 -1.75 16 10 C -0.09 -1.41 3.09 -10.27 -0.03 -1.44 16 11 C -0.16 -2.55 7.44 31.18 0.23 -2.32 16 12 C 0.24 4.18 3.28 31.18 0.10 4.29 16 13 F -0.20 -4.43 17.38 44.97 0.78 -3.65 16 14 F -0.20 -3.94 17.41 44.97 0.78 -3.16 16 15 C -0.14 -1.69 7.43 31.12 0.23 -1.46 16 16 C 0.12 3.08 6.08 86.36 0.53 3.60 16 17 C -0.14 -3.93 5.78 30.67 0.18 -3.75 16 18 C 0.17 5.83 2.53 45.02 0.11 5.94 16 19 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 20 N -0.72 -32.33 3.73 -322.82 -1.20 -33.53 16 21 C -0.22 -11.21 9.93 84.03 0.83 -10.38 16 22 H 0.08 3.67 7.83 -2.91 -0.02 3.64 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.97 -56.77 13.06 21.65 0.28 -56.49 16 25 Si 0.96 44.28 29.55 68.60 2.03 46.30 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.30 6.70 -2.39 -0.02 1.29 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.61 7.70 -2.39 -0.02 1.59 16 34 H 0.08 2.70 5.72 -2.39 -0.01 2.69 16 35 H 0.04 1.64 6.64 -2.39 -0.02 1.62 16 36 H 0.12 1.48 7.94 -2.39 -0.02 1.46 16 37 H 0.13 1.25 7.43 -2.39 -0.02 1.24 16 38 H 0.09 1.91 7.73 -2.39 -0.02 1.89 16 39 H 0.13 1.58 7.92 -2.39 -0.02 1.56 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.14 0.95 8.10 -2.39 -0.02 0.93 16 43 H 0.11 1.96 5.93 -2.39 -0.01 1.95 16 44 H 0.05 1.68 7.75 -2.38 -0.02 1.66 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.37 18.42 5.94 -92.71 -0.55 17.87 16 48 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -66.01 380.12 5.31 -60.70 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.41 Total: 30.11 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 4.71 Total: -1.46 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -3.35 Total: -109.31 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 1.56 Total: -6.81 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.01 5.31 -60.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037885330.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.039 kcal (2) G-P(sol) polarization free energy of solvation -66.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds