Wall clock time and date at job start Tue Mar 31 2020 15:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09009 * 109.52235 * 305.07693 * 3 2 1 5 5 C 1.53187 * 109.49977 * 65.16029 * 3 2 1 6 6 N 1.46927 * 108.77285 * 174.58721 * 5 3 2 7 7 C 1.34786 * 120.62860 * 126.41628 * 6 5 3 8 8 O 1.21278 * 119.99941 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00089 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.47374 * 180.02562 * 9 7 6 11 11 C 1.53782 * 113.61464 * 272.49818 * 10 9 7 12 12 C 1.53780 * 87.08201 * 220.01918 * 11 10 9 13 13 F 1.39901 * 113.61185 * 270.88088 * 12 11 10 14 14 F 1.39901 * 113.68934 * 139.99497 * 12 11 10 15 15 C 1.53774 * 87.08255 * 25.43221 * 12 11 10 16 16 C 1.46924 * 118.74314 * 306.39038 * 6 5 3 17 17 C 1.53195 * 108.77197 * 53.60867 * 16 6 5 18 18 C 1.53036 * 109.31520 * 305.36360 * 17 16 6 19 19 H 1.08997 * 109.45248 * 301.35782 * 18 17 16 20 20 N 1.46500 * 109.46251 * 181.38357 * 18 17 16 21 21 C 1.36935 * 119.99795 * 84.93172 * 20 18 17 22 22 H 1.08006 * 119.99956 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00104 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99934 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99927 * 25 23 21 29 29 H 1.09001 * 109.46617 * 300.00192 * 1 2 3 30 30 H 1.09002 * 109.47133 * 60.00043 * 1 2 3 31 31 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47327 * 240.00014 * 2 1 3 33 33 H 1.09002 * 109.47133 * 119.99957 * 2 1 3 34 34 H 1.08998 * 109.58963 * 294.37473 * 5 3 2 35 35 H 1.09002 * 109.58590 * 54.80146 * 5 3 2 36 36 H 1.09007 * 109.47446 * 300.00015 * 9 7 6 37 37 H 1.09006 * 109.47225 * 59.99602 * 9 7 6 38 38 H 1.09000 * 112.85239 * 43.80295 * 10 9 7 39 39 H 1.09008 * 113.61558 * 334.56612 * 11 10 9 40 40 H 1.08996 * 113.61450 * 105.46318 * 11 10 9 41 41 H 1.09001 * 113.61505 * 220.02112 * 15 12 11 42 42 H 1.09002 * 113.61435 * 89.11574 * 15 12 11 43 43 H 1.08994 * 109.59020 * 173.40048 * 16 6 5 44 44 H 1.09003 * 109.58579 * 293.68537 * 16 6 5 45 45 H 1.09004 * 109.49353 * 185.41727 * 17 16 6 46 46 H 1.08998 * 109.49696 * 65.32066 * 17 16 6 47 47 H 0.96997 * 120.00022 * 264.93646 * 20 18 17 48 48 H 0.97004 * 120.00335 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2452 3.4644 1.3505 7 6 1.4858 4.5566 1.5679 8 8 0.2898 4.4406 1.7323 9 6 2.1229 5.9217 1.6068 10 6 1.0481 6.9788 1.8678 11 6 0.3685 7.4952 0.5886 12 6 0.4099 8.8943 1.2255 13 9 -0.7161 9.1904 2.0013 14 9 0.7309 9.9136 0.3227 15 6 1.6112 8.3985 2.0475 16 6 3.6953 3.5889 1.1497 17 6 4.0736 2.8881 -0.1590 18 6 3.5653 1.4450 -0.1258 19 1 4.0009 0.9263 0.7282 20 7 3.9542 0.7619 -1.3621 21 6 5.1923 0.1862 -1.4659 22 1 5.8820 0.2354 -0.6361 23 6 5.5610 -0.4605 -2.6374 24 7 4.7207 -0.5200 -3.6487 25 14 7.2497 -1.2465 -2.7787 26 1 7.9988 -1.0410 -1.5130 27 1 7.9944 -0.6212 -3.9011 28 1 7.0987 -2.7015 -3.0345 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5533 2.2162 1.3585 35 1 1.9965 1.5378 2.1548 36 1 2.8649 5.9538 2.4047 37 1 2.6075 6.1238 0.6516 38 1 0.3465 6.6854 2.6486 39 1 0.9886 7.4029 -0.3031 40 1 -0.6411 7.1105 0.4449 41 1 1.6048 8.7431 3.0816 42 1 2.5711 8.5531 1.5547 43 1 3.9671 4.6428 1.0917 44 1 4.2209 3.1212 1.9822 45 1 5.1578 2.8893 -0.2720 46 1 3.6193 3.4147 -0.9982 47 1 3.3346 0.7175 -2.1071 48 1 3.8439 -0.1116 -3.5755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037885331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:25 Heat of formation + Delta-G solvation = -117.977294 kcal Electronic energy + Delta-G solvation = -29287.198007 eV Core-core repulsion = 25013.113921 eV Total energy + Delta-G solvation = -4274.084086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.06318 -47.39775 -40.43722 -38.66079 -37.48954 -34.93174 -34.03933 -31.88344 -30.77757 -29.44998 -28.36764 -26.59990 -25.11908 -23.94946 -23.44049 -22.71046 -21.00448 -20.40607 -19.87790 -19.03917 -17.64805 -17.33400 -17.22585 -16.83655 -16.50283 -16.07593 -15.63415 -15.05724 -14.76431 -14.32086 -14.26172 -14.06625 -13.77235 -13.69042 -13.63589 -13.51393 -13.29139 -13.26114 -13.01703 -12.89630 -12.56493 -12.21728 -11.97582 -11.72991 -11.60108 -11.43245 -11.41874 -11.20026 -10.96047 -10.76628 -10.72355 -10.62434 -10.34894 -10.29027 -10.09868 -9.91267 -9.76526 -9.22068 -8.94927 -8.56774 -7.08382 -6.14669 -3.15219 2.57860 2.95157 3.18806 3.47624 3.48219 3.53871 3.62866 3.92436 4.01302 4.02764 4.50713 4.61260 4.78216 4.88932 5.03092 5.05556 5.08598 5.10336 5.13662 5.17824 5.23227 5.32652 5.37567 5.45029 5.46982 5.48462 5.54334 5.57855 5.60600 5.78641 5.89738 5.92960 6.00948 6.03055 6.12898 6.23037 6.27321 6.32878 6.43979 6.54183 6.69577 6.80465 6.92216 7.41751 7.76112 8.13655 8.70686 9.17111 10.03581 10.18842 11.33494 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.002625 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.143761 B =10664.608766 C =11549.457251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.607 5.607 7 C 0.514 3.486 8 O -0.547 6.547 9 C -0.129 4.129 10 C -0.087 4.087 11 C -0.159 4.159 12 C 0.252 3.748 13 F -0.180 7.180 14 F -0.193 7.193 15 C -0.162 4.162 16 C 0.106 3.894 17 C -0.152 4.152 18 C 0.189 3.811 19 H 0.049 0.951 20 N -0.732 5.732 21 C -0.330 4.330 22 H 0.064 0.936 23 C -0.044 4.044 24 N -0.944 5.944 25 Si 1.083 2.917 26 H -0.295 1.295 27 H -0.294 1.294 28 H -0.293 1.293 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.367 0.633 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 15.016 13.072 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.340 5.340 7 C 0.302 3.698 8 O -0.425 6.425 9 C -0.169 4.169 10 C -0.106 4.106 11 C -0.197 4.197 12 C 0.215 3.785 13 F -0.161 7.161 14 F -0.174 7.174 15 C -0.200 4.200 16 C -0.017 4.017 17 C -0.193 4.193 18 C 0.079 3.921 19 H 0.066 0.934 20 N -0.373 5.373 21 C -0.461 4.461 22 H 0.082 0.918 23 C -0.242 4.242 24 N -0.589 5.589 25 Si 0.915 3.085 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.220 1.220 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.200 0.800 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.350 14.109 12.321 19.481 hybrid contribution -1.103 1.077 0.681 1.685 sum -6.452 15.186 13.002 21.007 Atomic orbital electron populations 1.21843 0.96641 1.01152 1.01366 1.21436 0.94502 0.95673 1.03305 1.21802 0.97624 0.96256 0.96873 0.91394 1.21727 0.99466 0.81546 0.97600 1.48198 1.08576 1.06839 1.70340 1.20521 0.86955 0.86076 0.76266 1.90676 1.14876 1.86626 1.50345 1.21645 0.98825 0.91822 1.04634 1.22166 0.97498 0.92322 0.98593 1.24178 1.04912 0.91099 0.99473 1.22112 0.85280 0.85238 0.85833 1.93018 1.53521 1.94413 1.75178 1.93010 1.92451 1.63627 1.68283 1.24193 0.97820 0.95795 1.02195 1.21881 0.79443 1.01187 0.99199 1.22665 1.02294 0.99220 0.95096 1.20112 0.90659 0.90476 0.90874 0.93351 1.42427 1.16494 1.65698 1.12729 1.20061 0.92400 1.32078 1.01572 0.91755 1.25722 1.05808 1.00239 0.92423 1.70818 1.08361 1.47588 1.32152 0.83177 0.74300 0.76295 0.74775 1.22154 1.22083 1.22049 0.93090 0.93024 0.93064 0.90267 0.92337 0.89096 0.91716 0.88143 0.88260 0.86806 0.87070 0.88477 0.88697 0.86808 0.90391 0.91379 0.90497 0.92344 0.79993 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.11 -1.65 1.92 -90.50 -0.17 -1.82 16 4 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 5 C 0.12 1.64 5.33 -3.71 -0.02 1.62 16 6 N -0.61 -7.65 2.97 -172.77 -0.51 -8.16 16 7 C 0.51 6.36 7.70 -10.98 -0.08 6.27 16 8 O -0.55 -8.52 15.17 5.56 0.08 -8.43 16 9 C -0.13 -1.06 3.88 -27.89 -0.11 -1.17 16 10 C -0.09 -0.72 3.13 -89.81 -0.28 -1.00 16 11 C -0.16 -1.41 7.42 -25.92 -0.19 -1.60 16 12 C 0.25 2.34 3.27 -25.92 -0.08 2.26 16 13 F -0.18 -1.99 17.38 2.25 0.04 -1.95 16 14 F -0.19 -2.06 17.41 2.25 0.04 -2.02 16 15 C -0.16 -1.09 7.43 -25.92 -0.19 -1.28 16 16 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 17 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 18 C 0.19 3.41 2.19 -67.89 -0.15 3.26 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 N -0.73 -16.92 4.33 -53.38 -0.23 -17.15 16 21 C -0.33 -8.71 9.93 -15.06 -0.15 -8.86 16 22 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 23 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 24 N -0.94 -28.28 13.70 55.49 0.76 -27.52 16 25 Si 1.08 25.19 29.92 -169.99 -5.09 20.11 16 26 H -0.30 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 29 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.48 7.22 -51.93 -0.37 1.11 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.32 5.73 -51.93 -0.30 1.02 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.62 7.94 -51.92 -0.41 0.21 16 37 H 0.10 0.70 7.39 -51.93 -0.38 0.32 16 38 H 0.11 1.10 7.68 -51.93 -0.40 0.70 16 39 H 0.11 0.88 7.90 -51.92 -0.41 0.47 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.11 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.37 8.97 6.34 -40.82 -0.26 8.71 16 48 H 0.26 7.55 6.78 -40.82 -0.28 7.27 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -31.53 381.92 -8.38 -39.91 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.74 Total: 7.99 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.49 Total: -8.54 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.02 Total: -52.83 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.53 -8.38 -39.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037885331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.064 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds