Wall clock time and date at job start Tue Mar 31 2020 15:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09009 * 109.52235 * 305.07693 * 3 2 1 5 5 C 1.53187 * 109.49977 * 65.16029 * 3 2 1 6 6 N 1.46927 * 108.77285 * 174.58721 * 5 3 2 7 7 C 1.34786 * 120.62860 * 126.41628 * 6 5 3 8 8 O 1.21278 * 119.99941 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00089 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.47374 * 180.02562 * 9 7 6 11 11 C 1.53782 * 113.61464 * 272.49818 * 10 9 7 12 12 C 1.53780 * 87.08201 * 220.01918 * 11 10 9 13 13 F 1.39901 * 113.61185 * 270.88088 * 12 11 10 14 14 F 1.39901 * 113.68934 * 139.99497 * 12 11 10 15 15 C 1.53774 * 87.08255 * 25.43221 * 12 11 10 16 16 C 1.46924 * 118.74314 * 306.39038 * 6 5 3 17 17 C 1.53195 * 108.77197 * 53.60867 * 16 6 5 18 18 C 1.53036 * 109.31520 * 305.36360 * 17 16 6 19 19 H 1.08997 * 109.45248 * 301.35782 * 18 17 16 20 20 N 1.46500 * 109.46251 * 181.38357 * 18 17 16 21 21 C 1.36935 * 119.99795 * 84.93172 * 20 18 17 22 22 H 1.08006 * 119.99956 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00104 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99934 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99927 * 25 23 21 29 29 H 1.09001 * 109.46617 * 300.00192 * 1 2 3 30 30 H 1.09002 * 109.47133 * 60.00043 * 1 2 3 31 31 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47327 * 240.00014 * 2 1 3 33 33 H 1.09002 * 109.47133 * 119.99957 * 2 1 3 34 34 H 1.08998 * 109.58963 * 294.37473 * 5 3 2 35 35 H 1.09002 * 109.58590 * 54.80146 * 5 3 2 36 36 H 1.09007 * 109.47446 * 300.00015 * 9 7 6 37 37 H 1.09006 * 109.47225 * 59.99602 * 9 7 6 38 38 H 1.09000 * 112.85239 * 43.80295 * 10 9 7 39 39 H 1.09008 * 113.61558 * 334.56612 * 11 10 9 40 40 H 1.08996 * 113.61450 * 105.46318 * 11 10 9 41 41 H 1.09001 * 113.61505 * 220.02112 * 15 12 11 42 42 H 1.09002 * 113.61435 * 89.11574 * 15 12 11 43 43 H 1.08994 * 109.59020 * 173.40048 * 16 6 5 44 44 H 1.09003 * 109.58579 * 293.68537 * 16 6 5 45 45 H 1.09004 * 109.49353 * 185.41727 * 17 16 6 46 46 H 1.08998 * 109.49696 * 65.32066 * 17 16 6 47 47 H 0.96997 * 120.00022 * 264.93646 * 20 18 17 48 48 H 0.97004 * 120.00335 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2452 3.4644 1.3505 7 6 1.4858 4.5566 1.5679 8 8 0.2898 4.4406 1.7323 9 6 2.1229 5.9217 1.6068 10 6 1.0481 6.9788 1.8678 11 6 0.3685 7.4952 0.5886 12 6 0.4099 8.8943 1.2255 13 9 -0.7161 9.1904 2.0013 14 9 0.7309 9.9136 0.3227 15 6 1.6112 8.3985 2.0475 16 6 3.6953 3.5889 1.1497 17 6 4.0736 2.8881 -0.1590 18 6 3.5653 1.4450 -0.1258 19 1 4.0009 0.9263 0.7282 20 7 3.9542 0.7619 -1.3621 21 6 5.1923 0.1862 -1.4659 22 1 5.8820 0.2354 -0.6361 23 6 5.5610 -0.4605 -2.6374 24 7 4.7207 -0.5200 -3.6487 25 14 7.2497 -1.2465 -2.7787 26 1 7.9988 -1.0410 -1.5130 27 1 7.9944 -0.6212 -3.9011 28 1 7.0987 -2.7015 -3.0345 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5533 2.2162 1.3585 35 1 1.9965 1.5378 2.1548 36 1 2.8649 5.9538 2.4047 37 1 2.6075 6.1238 0.6516 38 1 0.3465 6.6854 2.6486 39 1 0.9886 7.4029 -0.3031 40 1 -0.6411 7.1105 0.4449 41 1 1.6048 8.7431 3.0816 42 1 2.5711 8.5531 1.5547 43 1 3.9671 4.6428 1.0917 44 1 4.2209 3.1212 1.9822 45 1 5.1578 2.8893 -0.2720 46 1 3.6193 3.4147 -0.9982 47 1 3.3346 0.7175 -2.1071 48 1 3.8439 -0.1116 -3.5755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037885331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:24 Heat of formation + Delta-G solvation = -135.559252 kcal Electronic energy + Delta-G solvation = -29287.960418 eV Core-core repulsion = 25013.113921 eV Total energy + Delta-G solvation = -4274.846497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.82187 -48.17359 -41.44639 -39.64798 -38.47419 -36.38254 -35.47805 -33.48884 -31.61548 -30.90665 -29.62133 -27.19455 -26.51818 -25.27909 -24.71077 -23.86316 -22.31010 -21.36795 -20.86664 -20.07418 -19.27455 -18.41509 -18.18671 -17.54106 -17.28010 -17.06450 -16.66089 -16.59451 -15.94379 -15.63817 -15.40642 -15.19498 -15.03916 -14.87837 -14.71450 -14.48942 -14.41004 -14.21818 -14.05272 -13.63748 -13.47312 -13.34077 -13.20407 -13.04337 -12.75468 -12.57997 -12.44329 -12.27765 -12.14857 -11.98954 -11.86498 -11.84794 -11.70531 -11.62994 -11.45013 -11.37145 -11.04218 -10.91257 -10.70419 -9.65563 -9.04959 -8.32961 -5.26575 1.60063 1.64820 1.70879 1.81695 2.00637 2.53073 2.73848 2.84622 3.23730 3.35889 3.37982 3.45155 3.62135 3.68280 3.78931 3.96192 4.00193 4.14677 4.22153 4.28317 4.33998 4.39638 4.42683 4.49524 4.54022 4.58040 4.67040 4.67992 4.71205 4.76632 4.79863 4.82351 4.86472 4.88407 4.95196 5.00277 5.10137 5.21662 5.30260 5.32003 5.39459 5.49094 5.61689 5.66472 6.45548 6.54086 7.14208 7.18449 8.04482 8.17906 9.18833 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.002625 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.143761 B =10664.608766 C =11549.457251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.050 0.950 5 C 0.126 3.874 6 N -0.610 5.610 7 C 0.509 3.491 8 O -0.584 6.584 9 C -0.123 4.123 10 C -0.085 4.085 11 C -0.164 4.164 12 C 0.236 3.764 13 F -0.196 7.196 14 F -0.203 7.203 15 C -0.140 4.140 16 C 0.115 3.885 17 C -0.143 4.143 18 C 0.183 3.817 19 H 0.043 0.957 20 N -0.744 5.744 21 C -0.316 4.316 22 H 0.069 0.931 23 C -0.108 4.108 24 N -0.981 5.981 25 Si 1.128 2.872 26 H -0.268 1.268 27 H -0.295 1.295 28 H -0.297 1.297 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.139 0.861 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.356 0.644 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 16.510 15.267 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.113 4.113 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.342 5.342 7 C 0.299 3.701 8 O -0.465 6.465 9 C -0.162 4.162 10 C -0.104 4.104 11 C -0.202 4.202 12 C 0.200 3.800 13 F -0.177 7.177 14 F -0.184 7.184 15 C -0.178 4.178 16 C -0.008 4.008 17 C -0.184 4.184 18 C 0.074 3.926 19 H 0.061 0.939 20 N -0.385 5.385 21 C -0.447 4.447 22 H 0.087 0.913 23 C -0.299 4.299 24 N -0.630 5.630 25 Si 0.954 3.046 26 H -0.193 1.193 27 H -0.222 1.222 28 H -0.224 1.224 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.141 0.859 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.157 0.843 43 H 0.136 0.864 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.187 0.813 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.776 15.644 14.578 21.714 hybrid contribution -1.689 0.624 0.036 1.801 sum -5.464 16.268 14.614 22.541 Atomic orbital electron populations 1.21772 0.94753 1.01947 1.01763 1.21354 0.96159 0.95437 1.01610 1.21640 0.95749 0.96260 0.97649 0.93120 1.21548 0.99281 0.82546 0.96361 1.48279 1.09143 1.06442 1.70347 1.21300 0.86526 0.87266 0.74969 1.90671 1.16692 1.87230 1.51862 1.21732 0.99024 0.88521 1.06931 1.22062 0.97415 0.93416 0.97493 1.24262 1.04345 0.91027 1.00526 1.22531 0.86146 0.84907 0.86412 1.92984 1.54634 1.94510 1.75524 1.92987 1.92494 1.64095 1.68787 1.24164 0.97363 0.93488 1.02755 1.21928 0.78637 1.03266 0.96956 1.22455 1.01232 0.97313 0.97396 1.20373 0.92247 0.91593 0.88338 0.93899 1.42630 1.15441 1.66361 1.14078 1.20371 0.93216 1.30130 1.01031 0.91342 1.27031 1.08543 1.01670 0.92644 1.70932 1.08536 1.49954 1.33553 0.82595 0.71094 0.75117 0.75779 1.19317 1.22216 1.22417 0.91644 0.93598 0.92117 0.94011 0.91835 0.89713 0.90514 0.84791 0.86255 0.88548 0.85885 0.90375 0.87327 0.84299 0.86355 0.89774 0.91632 0.93557 0.81266 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.67 71.98 0.70 -3.17 16 2 C -0.11 -3.41 5.31 30.59 0.16 -3.25 16 3 C -0.09 -2.89 1.92 -10.71 -0.02 -2.92 16 4 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 5 C 0.13 3.26 5.33 86.36 0.46 3.72 16 6 N -0.61 -13.70 2.97 -818.91 -2.43 -16.14 16 7 C 0.51 11.24 7.70 87.65 0.67 11.91 16 8 O -0.58 -17.48 15.17 -3.02 -0.05 -17.53 16 9 C -0.12 -1.49 3.88 29.84 0.12 -1.38 16 10 C -0.08 -1.18 3.13 -10.27 -0.03 -1.22 16 11 C -0.16 -2.69 7.42 31.12 0.23 -2.46 16 12 C 0.24 4.03 3.27 31.12 0.10 4.13 16 13 F -0.20 -4.21 17.38 44.97 0.78 -3.43 16 14 F -0.20 -4.04 17.41 44.97 0.78 -3.26 16 15 C -0.14 -1.38 7.43 31.12 0.23 -1.15 16 16 C 0.11 2.18 6.34 86.36 0.55 2.73 16 17 C -0.14 -4.19 5.66 30.67 0.17 -4.02 16 18 C 0.18 6.52 2.19 45.02 0.10 6.62 16 19 H 0.04 1.58 8.08 -2.39 -0.02 1.57 16 20 N -0.74 -35.14 4.33 -322.81 -1.40 -36.54 16 21 C -0.32 -16.75 9.93 84.03 0.83 -15.91 16 22 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 23 C -0.11 -6.08 5.50 84.86 0.47 -5.61 16 24 N -0.98 -60.51 13.70 21.65 0.30 -60.22 16 25 Si 1.13 50.82 29.92 68.60 2.05 52.87 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 28 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 29 H 0.06 1.56 6.70 -2.39 -0.02 1.54 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.64 7.22 -2.39 -0.02 1.62 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.36 5.73 -2.39 -0.01 2.34 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.13 0.82 7.94 -2.38 -0.02 0.80 16 37 H 0.12 1.07 7.39 -2.38 -0.02 1.05 16 38 H 0.10 1.73 7.68 -2.39 -0.02 1.71 16 39 H 0.12 1.69 7.90 -2.38 -0.02 1.67 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.14 0.72 8.10 -2.39 -0.02 0.70 16 43 H 0.12 1.37 5.93 -2.39 -0.01 1.35 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.36 18.21 6.34 -92.71 -0.59 17.63 16 48 H 0.24 15.01 6.78 -92.70 -0.63 14.38 16 Total: -1.00 -71.54 381.92 5.29 -66.25 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.51 Total: 29.96 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.74 Total: -11.97 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -3.53 Total: -112.89 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.05 Total: -17.53 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 1.56 Total: -6.69 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -71.54 5.29 -66.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037885331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.311 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds