Wall clock time and date at job start Tue Mar 31 2020 15:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.09000 * 109.49821 * 304.93525 * 3 2 1 5 5 C 1.53193 * 109.49538 * 65.00071 * 3 2 1 6 6 N 1.46931 * 108.77260 * 174.61574 * 5 3 2 7 7 C 1.34777 * 120.62550 * 126.11744 * 6 5 3 8 8 O 1.21284 * 119.99627 * 175.53880 * 7 6 5 9 9 C 1.50703 * 120.00202 * 355.53659 * 7 6 5 10 10 C 1.53002 * 112.84742 * 63.97235 * 9 7 6 11 11 F 1.39899 * 109.47246 * 64.51538 * 10 9 7 12 12 F 1.39892 * 109.46915 * 184.51829 * 10 9 7 13 13 C 1.53771 * 113.61523 * 292.66188 * 9 7 6 14 14 C 1.53780 * 87.08453 * 220.02009 * 13 9 7 15 15 C 1.53782 * 113.61248 * 195.16183 * 9 7 6 16 16 C 1.46922 * 118.74270 * 306.39484 * 6 5 3 17 17 C 1.53190 * 108.77739 * 53.60516 * 16 6 5 18 18 C 1.53044 * 109.52273 * 184.85516 * 3 2 1 19 19 H 1.09002 * 109.46187 * 58.65009 * 18 3 2 20 20 N 1.46500 * 109.45819 * 298.68900 * 18 3 2 21 21 C 1.36942 * 119.99860 * 155.00341 * 20 18 3 22 22 H 1.08001 * 119.99593 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00035 * 179.97438 * 21 20 18 24 24 N 1.31614 * 120.00004 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99685 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47164 * 90.00029 * 25 23 21 27 27 H 1.48500 * 109.46737 * 209.99680 * 25 23 21 28 28 H 1.48501 * 109.47329 * 329.99345 * 25 23 21 29 29 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47500 * 299.99669 * 1 2 3 31 31 H 1.09000 * 109.47305 * 59.99715 * 1 2 3 32 32 H 1.08997 * 109.46857 * 240.00094 * 2 1 3 33 33 H 1.09000 * 109.47305 * 120.00285 * 2 1 3 34 34 H 1.09006 * 109.58500 * 54.83254 * 5 3 2 35 35 H 1.08994 * 109.70505 * 294.47119 * 5 3 2 36 36 H 1.09005 * 109.46752 * 304.51886 * 10 9 7 37 37 H 1.09004 * 113.61427 * 334.57126 * 13 9 7 38 38 H 1.09005 * 113.61273 * 105.47058 * 13 9 7 39 39 H 1.08997 * 113.61298 * 270.89070 * 14 13 9 40 40 H 1.08995 * 113.62000 * 139.97655 * 14 13 9 41 41 H 1.08996 * 113.61548 * 254.53312 * 15 9 7 42 42 H 1.09000 * 113.61506 * 25.35573 * 15 9 7 43 43 H 1.08992 * 109.58971 * 173.39974 * 16 6 5 44 44 H 1.09002 * 109.58354 * 293.82115 * 16 6 5 45 45 H 1.08998 * 109.50080 * 185.41693 * 17 16 6 46 46 H 1.09003 * 109.49616 * 65.31552 * 17 16 6 47 47 H 0.97001 * 120.00381 * 334.99807 * 20 18 3 48 48 H 0.96995 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1279 1.3088 6 7 2.2409 3.4659 1.3490 7 6 1.4796 4.5584 1.5576 8 8 2.0004 5.6480 1.6693 9 6 -0.0187 4.4260 1.6518 10 6 -0.4669 3.5900 2.8522 11 9 -0.1062 4.2428 4.0359 12 9 -1.8557 3.4268 2.8143 13 6 -0.6851 4.0142 0.3286 14 6 -1.8040 5.0115 0.6727 15 6 -0.7647 5.7643 1.5201 16 6 3.6914 3.5908 1.1515 17 6 4.0733 2.8890 -0.1555 18 6 3.5655 1.4456 -0.1221 19 1 3.8573 0.9366 -1.0407 20 7 4.1485 0.7496 1.0276 21 6 5.3869 0.1744 0.9239 22 1 5.9336 0.2335 -0.0057 23 6 5.9396 -0.4847 2.0134 24 7 7.1296 -1.0380 1.9135 25 14 4.9937 -0.5875 3.6209 26 1 4.1523 -1.8112 3.6228 27 1 5.9503 -0.6428 4.7554 28 1 4.1265 0.6097 3.7625 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9912 1.5399 2.1547 35 1 0.5497 2.2167 1.3567 36 1 0.0150 2.6130 2.8148 37 1 -0.1097 4.2912 -0.5548 38 1 -1.0159 2.9757 0.3110 39 1 -2.6124 4.5752 1.2594 40 1 -2.1617 5.5798 -0.1858 41 1 -1.1598 6.1387 2.4645 42 1 -0.2106 6.5202 0.9637 43 1 3.9628 4.6448 1.0931 44 1 4.2153 3.1221 1.9845 45 1 5.1577 2.8906 -0.2660 46 1 3.6206 3.4145 -0.9964 47 1 3.6574 0.6962 1.8624 48 1 7.5159 -1.4982 2.6749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037913549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:55 Heat of formation + Delta-G solvation = -99.605788 kcal Electronic energy + Delta-G solvation = -31653.021114 eV Core-core repulsion = 27379.733676 eV Total energy + Delta-G solvation = -4273.287438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.32985 -47.25615 -40.95247 -38.82012 -37.46113 -34.54600 -34.01417 -32.09733 -30.39656 -28.95775 -28.71459 -26.15483 -25.81181 -24.27352 -23.85560 -23.07729 -21.24196 -20.39909 -19.65260 -18.71368 -18.12027 -17.73320 -17.47899 -17.23043 -16.13320 -16.03904 -15.23006 -14.94960 -14.72143 -14.50739 -14.33438 -14.03524 -13.98978 -13.67298 -13.56911 -13.41408 -13.34096 -12.96127 -12.77389 -12.59169 -12.54047 -12.34966 -12.17271 -11.96660 -11.82039 -11.47676 -11.38801 -11.11383 -11.00506 -10.90772 -10.78270 -10.60017 -10.50640 -10.41729 -10.28861 -10.02000 -9.68515 -9.59946 -9.01789 -8.50520 -7.35121 -5.84223 -3.20141 2.39794 2.90929 3.28273 3.29801 3.36370 3.39186 3.74410 3.87552 3.97099 4.27693 4.42315 4.50667 4.61741 4.69646 4.77664 4.88895 4.98305 5.03204 5.22717 5.28869 5.33652 5.37838 5.40596 5.43492 5.45630 5.56405 5.58470 5.62526 5.66212 5.71418 5.74853 5.85433 5.93970 6.03265 6.04316 6.11491 6.24476 6.31043 6.36816 6.52035 6.57574 6.63085 6.80583 7.40808 7.91219 8.09119 8.34512 9.11997 9.84465 10.03256 11.34187 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004472 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.025628 B = 6260.073288 C = 6321.238855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.105 4.105 4 H 0.076 0.924 5 C 0.099 3.901 6 N -0.599 5.599 7 C 0.534 3.466 8 O -0.531 6.531 9 C -0.171 4.171 10 C 0.282 3.718 11 F -0.194 7.194 12 F -0.194 7.194 13 C -0.111 4.111 14 C -0.147 4.147 15 C -0.103 4.103 16 C 0.118 3.882 17 C -0.149 4.149 18 C 0.185 3.815 19 H 0.062 0.938 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.009 3.991 24 N -0.932 5.932 25 Si 0.877 3.123 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.359 0.641 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.505 8.246 -3.909 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.125 4.125 4 H 0.094 0.906 5 C -0.024 4.024 6 N -0.331 5.331 7 C 0.320 3.680 8 O -0.407 6.407 9 C -0.175 4.175 10 C 0.228 3.772 11 F -0.175 7.175 12 F -0.175 7.175 13 C -0.149 4.149 14 C -0.184 4.184 15 C -0.141 4.141 16 C -0.003 4.003 17 C -0.190 4.190 18 C 0.075 3.925 19 H 0.080 0.920 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.187 4.187 24 N -0.579 5.579 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.193 0.807 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.986 8.739 -3.885 21.259 hybrid contribution -0.468 -0.242 1.464 1.556 sum -19.454 8.498 -2.420 21.367 Atomic orbital electron populations 1.21884 0.96656 1.01604 1.01085 1.21474 0.94366 0.95634 1.03761 1.21808 0.98042 0.96176 0.96495 0.90586 1.22140 0.97381 0.83154 0.99711 1.48144 1.08993 1.05935 1.70025 1.19697 0.87085 0.84308 0.76929 1.90687 1.73657 1.26345 1.50036 1.23259 0.94580 1.02023 0.97679 1.21759 0.77293 0.96629 0.81476 1.93026 1.91376 1.83777 1.49320 1.92949 1.31819 1.96337 1.96406 1.22917 0.96872 1.00910 0.94172 1.23101 0.97081 0.97711 1.00543 1.22765 0.95770 0.93937 1.01598 1.21646 0.77852 1.01515 0.99334 1.22510 1.02447 0.98393 0.95609 1.20197 0.89017 0.90918 0.92362 0.91956 1.42820 1.19759 1.65887 1.10198 1.19039 0.92134 1.26763 0.99251 0.89118 1.24629 0.96411 1.00259 0.97434 1.69679 1.16252 1.41158 1.30833 0.86687 0.79560 0.77633 0.85359 1.21022 1.21694 1.20584 0.92683 0.93394 0.92845 0.91096 0.90987 0.90876 0.90288 0.86207 0.88388 0.89827 0.88498 0.90534 0.90459 0.88080 0.89906 0.90301 0.90097 0.92969 0.80747 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.15 0.36 -1.09 16 2 C -0.11 -1.40 5.19 -26.73 -0.14 -1.54 16 3 C -0.11 -1.34 2.14 -90.50 -0.19 -1.53 16 4 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 5 C 0.10 1.25 3.57 -3.71 -0.01 1.24 16 6 N -0.60 -8.67 2.97 -172.77 -0.51 -9.18 16 7 C 0.53 7.85 6.63 -10.98 -0.07 7.78 16 8 O -0.53 -9.56 15.54 5.55 0.09 -9.48 16 9 C -0.17 -1.95 0.47 -154.85 -0.07 -2.02 16 10 C 0.28 3.19 4.29 37.16 0.16 3.35 16 11 F -0.19 -2.69 17.21 2.25 0.04 -2.66 16 12 F -0.19 -2.04 14.55 2.25 0.03 -2.01 16 13 C -0.11 -0.97 6.01 -25.92 -0.16 -1.12 16 14 C -0.15 -1.20 7.56 -25.92 -0.20 -1.40 16 15 C -0.10 -1.09 6.80 -25.92 -0.18 -1.26 16 16 C 0.12 1.92 6.16 -3.71 -0.02 1.90 16 17 C -0.15 -2.35 5.78 -26.61 -0.15 -2.50 16 18 C 0.18 3.04 2.53 -67.88 -0.17 2.87 16 19 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 20 N -0.74 -15.32 3.53 -53.38 -0.19 -15.51 16 21 C -0.24 -6.24 10.41 -15.06 -0.16 -6.39 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 25 Si 0.88 21.06 27.74 -169.99 -4.71 16.35 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.40 6.70 -51.93 -0.35 0.06 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.04 7.70 -51.93 -0.40 0.64 16 34 H 0.07 1.04 6.64 -51.93 -0.34 0.70 16 35 H 0.08 0.80 2.01 -51.93 -0.10 0.69 16 36 H 0.12 1.20 5.24 -51.93 -0.27 0.93 16 37 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.08 0.62 7.39 -51.93 -0.38 0.24 16 39 H 0.10 0.78 6.38 -51.93 -0.33 0.45 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.10 1.14 7.68 -51.93 -0.40 0.74 16 43 H 0.08 1.38 7.03 -51.93 -0.37 1.01 16 44 H 0.08 1.47 7.74 -51.93 -0.40 1.06 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.36 7.39 3.80 -40.82 -0.16 7.23 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -30.63 364.88 -7.40 -38.04 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.32 Total: 7.88 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.10 Total: -1.58 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.07 Total: -52.04 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.63 -7.40 -38.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037913549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.571 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds