Wall clock time and date at job start Tue Mar 31 2020 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 H 1.09000 * 109.49821 * 304.93525 * 3 2 1 5 5 C 1.53193 * 109.49538 * 65.00071 * 3 2 1 6 6 N 1.46931 * 108.77260 * 174.61574 * 5 3 2 7 7 C 1.34777 * 120.62550 * 126.11744 * 6 5 3 8 8 O 1.21284 * 119.99627 * 175.53880 * 7 6 5 9 9 C 1.50703 * 120.00202 * 355.53659 * 7 6 5 10 10 C 1.53002 * 112.84742 * 63.97235 * 9 7 6 11 11 F 1.39899 * 109.47246 * 64.51538 * 10 9 7 12 12 F 1.39892 * 109.46915 * 184.51829 * 10 9 7 13 13 C 1.53771 * 113.61523 * 292.66188 * 9 7 6 14 14 C 1.53780 * 87.08453 * 220.02009 * 13 9 7 15 15 C 1.53782 * 113.61248 * 195.16183 * 9 7 6 16 16 C 1.46922 * 118.74270 * 306.39484 * 6 5 3 17 17 C 1.53190 * 108.77739 * 53.60516 * 16 6 5 18 18 C 1.53044 * 109.52273 * 184.85516 * 3 2 1 19 19 H 1.09002 * 109.46187 * 58.65009 * 18 3 2 20 20 N 1.46500 * 109.45819 * 298.68900 * 18 3 2 21 21 C 1.36942 * 119.99860 * 155.00341 * 20 18 3 22 22 H 1.08001 * 119.99593 * 359.97438 * 21 20 18 23 23 C 1.38814 * 120.00035 * 179.97438 * 21 20 18 24 24 N 1.31614 * 120.00004 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99685 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47164 * 90.00029 * 25 23 21 27 27 H 1.48500 * 109.46737 * 209.99680 * 25 23 21 28 28 H 1.48501 * 109.47329 * 329.99345 * 25 23 21 29 29 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47500 * 299.99669 * 1 2 3 31 31 H 1.09000 * 109.47305 * 59.99715 * 1 2 3 32 32 H 1.08997 * 109.46857 * 240.00094 * 2 1 3 33 33 H 1.09000 * 109.47305 * 120.00285 * 2 1 3 34 34 H 1.09006 * 109.58500 * 54.83254 * 5 3 2 35 35 H 1.08994 * 109.70505 * 294.47119 * 5 3 2 36 36 H 1.09005 * 109.46752 * 304.51886 * 10 9 7 37 37 H 1.09004 * 113.61427 * 334.57126 * 13 9 7 38 38 H 1.09005 * 113.61273 * 105.47058 * 13 9 7 39 39 H 1.08997 * 113.61298 * 270.89070 * 14 13 9 40 40 H 1.08995 * 113.62000 * 139.97655 * 14 13 9 41 41 H 1.08996 * 113.61548 * 254.53312 * 15 9 7 42 42 H 1.09000 * 113.61506 * 25.35573 * 15 9 7 43 43 H 1.08992 * 109.58971 * 173.39974 * 16 6 5 44 44 H 1.09002 * 109.58354 * 293.82115 * 16 6 5 45 45 H 1.08998 * 109.50080 * 185.41693 * 17 16 6 46 46 H 1.09003 * 109.49616 * 65.31552 * 17 16 6 47 47 H 0.97001 * 120.00381 * 334.99807 * 20 18 3 48 48 H 0.96995 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1279 1.3088 6 7 2.2409 3.4659 1.3490 7 6 1.4796 4.5584 1.5576 8 8 2.0004 5.6480 1.6693 9 6 -0.0187 4.4260 1.6518 10 6 -0.4669 3.5900 2.8522 11 9 -0.1062 4.2428 4.0359 12 9 -1.8557 3.4268 2.8143 13 6 -0.6851 4.0142 0.3286 14 6 -1.8040 5.0115 0.6727 15 6 -0.7647 5.7643 1.5201 16 6 3.6914 3.5908 1.1515 17 6 4.0733 2.8890 -0.1555 18 6 3.5655 1.4456 -0.1221 19 1 3.8573 0.9366 -1.0407 20 7 4.1485 0.7496 1.0276 21 6 5.3869 0.1744 0.9239 22 1 5.9336 0.2335 -0.0057 23 6 5.9396 -0.4847 2.0134 24 7 7.1296 -1.0380 1.9135 25 14 4.9937 -0.5875 3.6209 26 1 4.1523 -1.8112 3.6228 27 1 5.9503 -0.6428 4.7554 28 1 4.1265 0.6097 3.7625 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9912 1.5399 2.1547 35 1 0.5497 2.2167 1.3567 36 1 0.0150 2.6130 2.8148 37 1 -0.1097 4.2912 -0.5548 38 1 -1.0159 2.9757 0.3110 39 1 -2.6124 4.5752 1.2594 40 1 -2.1617 5.5798 -0.1858 41 1 -1.1598 6.1387 2.4645 42 1 -0.2106 6.5202 0.9637 43 1 3.9628 4.6448 1.0931 44 1 4.2153 3.1221 1.9845 45 1 5.1577 2.8906 -0.2660 46 1 3.6206 3.4145 -0.9964 47 1 3.6574 0.6962 1.8624 48 1 7.5159 -1.4982 2.6749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037913549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:54 Heat of formation + Delta-G solvation = -117.277063 kcal Electronic energy + Delta-G solvation = -31653.787398 eV Core-core repulsion = 27379.733676 eV Total energy + Delta-G solvation = -4274.053722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.22177 -48.16868 -42.02986 -39.93148 -38.52777 -36.05346 -35.20562 -33.80856 -31.94926 -30.14654 -29.64494 -27.06457 -26.84223 -25.40909 -25.15504 -24.49817 -22.30618 -21.39593 -20.59748 -20.03693 -19.79753 -18.89587 -18.46219 -18.14925 -17.26702 -17.00646 -16.66737 -16.24666 -15.94960 -15.74470 -15.48795 -15.28413 -14.97186 -14.87426 -14.70091 -14.56466 -14.39812 -14.22279 -13.93825 -13.76962 -13.48838 -13.40495 -13.12303 -13.04890 -12.96588 -12.84592 -12.63986 -12.45510 -12.28540 -12.11977 -12.06523 -11.86874 -11.55840 -11.53193 -11.45823 -11.35979 -11.17357 -10.91176 -10.77329 -9.76997 -9.24541 -7.98932 -5.29875 1.28837 1.33811 1.37444 1.44384 1.77044 2.48444 2.49410 2.91121 2.97236 3.09812 3.33324 3.41399 3.60029 3.64375 3.70946 3.80506 3.87738 3.93954 4.02819 4.19572 4.25932 4.30831 4.38137 4.40734 4.53280 4.56882 4.67678 4.70855 4.78498 4.88385 4.90323 4.94441 4.97901 5.06238 5.08114 5.10612 5.16545 5.22692 5.34964 5.37574 5.42523 5.49513 5.65121 5.84008 6.24047 6.27156 6.93516 7.12476 7.88946 8.06398 9.23165 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.004472 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.025628 B = 6260.073288 C = 6321.238855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.094 4.094 4 H 0.106 0.894 5 C 0.097 3.903 6 N -0.597 5.597 7 C 0.532 3.468 8 O -0.570 6.570 9 C -0.176 4.176 10 C 0.281 3.719 11 F -0.212 7.212 12 F -0.186 7.186 13 C -0.104 4.104 14 C -0.132 4.132 15 C -0.111 4.111 16 C 0.123 3.877 17 C -0.139 4.139 18 C 0.177 3.823 19 H 0.054 0.946 20 N -0.741 5.741 21 C -0.213 4.213 22 H 0.060 0.940 23 C -0.061 4.061 24 N -0.986 5.986 25 Si 0.939 3.061 26 H -0.274 1.274 27 H -0.305 1.305 28 H -0.257 1.257 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.362 0.638 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.600 8.510 -4.614 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.113 4.113 4 H 0.124 0.876 5 C -0.024 4.024 6 N -0.329 5.329 7 C 0.320 3.680 8 O -0.449 6.449 9 C -0.180 4.180 10 C 0.227 3.773 11 F -0.194 7.194 12 F -0.167 7.167 13 C -0.142 4.142 14 C -0.169 4.169 15 C -0.149 4.149 16 C 0.001 3.999 17 C -0.180 4.180 18 C 0.069 3.931 19 H 0.072 0.928 20 N -0.384 5.384 21 C -0.344 4.344 22 H 0.078 0.922 23 C -0.252 4.252 24 N -0.637 5.637 25 Si 0.768 3.232 26 H -0.200 1.200 27 H -0.233 1.233 28 H -0.182 1.182 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.154 0.846 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.197 0.803 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.157 9.022 -4.619 25.278 hybrid contribution 0.833 -0.238 1.580 1.802 sum -22.323 8.784 -3.039 24.181 Atomic orbital electron populations 1.21861 0.93711 1.02505 1.02731 1.21439 0.96941 0.94514 1.02251 1.21740 0.94640 0.97243 0.97692 0.87633 1.22289 0.99201 0.81849 0.99104 1.48156 1.08044 1.06849 1.69801 1.20289 0.88491 0.83506 0.75667 1.90671 1.74743 1.27863 1.51635 1.23367 0.91839 1.03227 0.99550 1.21911 0.77788 0.97012 0.80592 1.92995 1.91624 1.84224 1.50529 1.92966 1.31129 1.96270 1.96299 1.23018 0.96316 1.02456 0.92364 1.23044 0.96386 0.96973 1.00519 1.22813 0.96646 0.93622 1.01797 1.21387 0.79340 1.00766 0.98413 1.22367 1.01137 0.98083 0.96367 1.20451 0.91944 0.90400 0.90338 0.92806 1.42772 1.18111 1.65803 1.11764 1.18996 0.93253 1.24621 0.97523 0.92231 1.25321 0.97456 1.01314 1.01082 1.69859 1.18572 1.43606 1.31660 0.85658 0.78267 0.78706 0.80600 1.20033 1.23253 1.18203 0.92362 0.92000 0.90845 0.91876 0.93402 0.92135 0.86914 0.84642 0.87908 0.87468 0.87929 0.88796 0.91218 0.89185 0.90592 0.93002 0.92493 0.90405 0.80350 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 71.98 0.70 -1.39 16 2 C -0.11 -2.43 5.19 30.59 0.16 -2.27 16 3 C -0.09 -2.08 2.14 -10.71 -0.02 -2.10 16 4 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 5 C 0.10 2.15 3.57 86.36 0.31 2.46 16 6 N -0.60 -16.09 2.97 -818.91 -2.43 -18.52 16 7 C 0.53 14.68 6.63 87.66 0.58 15.26 16 8 O -0.57 -20.25 15.54 -3.04 -0.05 -20.30 16 9 C -0.18 -3.47 0.47 -52.40 -0.02 -3.49 16 10 C 0.28 5.43 4.29 71.98 0.31 5.73 16 11 F -0.21 -5.52 17.21 44.97 0.77 -4.75 16 12 F -0.19 -3.16 14.55 44.97 0.65 -2.50 16 13 C -0.10 -1.31 6.01 31.12 0.19 -1.12 16 14 C -0.13 -1.60 7.56 31.12 0.24 -1.36 16 15 C -0.11 -2.09 6.80 31.12 0.21 -1.88 16 16 C 0.12 3.98 6.16 86.36 0.53 4.51 16 17 C -0.14 -4.29 5.78 30.67 0.18 -4.11 16 18 C 0.18 5.62 2.53 45.02 0.11 5.74 16 19 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 20 N -0.74 -30.32 3.53 -322.79 -1.14 -31.46 16 21 C -0.21 -11.21 10.41 84.03 0.87 -10.34 16 22 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 23 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 24 N -0.99 -61.80 13.97 21.65 0.30 -61.50 16 25 Si 0.94 44.04 27.74 68.60 1.90 45.94 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.26 -10.90 6.52 99.48 0.65 -10.25 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.69 6.70 -2.39 -0.02 0.67 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.27 7.70 -2.39 -0.02 1.25 16 34 H 0.06 1.54 6.64 -2.38 -0.02 1.53 16 35 H 0.11 1.73 2.01 -2.39 0.00 1.72 16 36 H 0.14 2.17 5.24 -2.38 -0.01 2.15 16 37 H 0.10 1.27 8.09 -2.38 -0.02 1.25 16 38 H 0.11 0.88 7.39 -2.38 -0.02 0.87 16 39 H 0.10 1.18 6.38 -2.39 -0.02 1.16 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 42 H 0.09 1.90 7.68 -2.39 -0.02 1.88 16 43 H 0.08 2.55 7.03 -2.39 -0.02 2.54 16 44 H 0.05 1.95 7.74 -2.39 -0.02 1.93 16 45 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 47 H 0.36 14.50 3.80 -92.71 -0.35 14.15 16 48 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -70.02 364.88 5.39 -64.63 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.57 Total: 25.79 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.80 Total: 2.68 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -3.27 Total: -111.48 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 1.43 Total: -7.25 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.94 kcal Total: -70.02 5.39 -64.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037913549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.648 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds